RNA–Protein interactions for RNA: ENST00000551344.1

DDX54-208, Transcript of DEAD-box helicase 54, human

TSL 5

Gene DDX54, Length 872 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX54-208	ENST00000551344	DUOX2	Q9NRD8	1548 aa		29.28	■■■□□ 2.28
DDX54-208	ENST00000551344	FAM135A	Q9P2D6	1515 aa		29.28	■■■□□ 2.28
DDX54-208	ENST00000551344	KIF15	Q9NS87	1388 aa		29.27	■■■□□ 2.28
DDX54-208	ENST00000551344	PTPRK	Q15262	1439 aa		29.27	■■■□□ 2.28
DDX54-208	ENST00000551344	CHIC2	Q9UKJ5	165 aa		29.26	■■■□□ 2.27
DDX54-208	ENST00000551344	ANKRD30A	Q9BXX3	1397 aa		29.25	■■■□□ 2.27
DDX54-208	ENST00000551344	CROCC2	H7BZ55	1655 aa		29.24	■■■□□ 2.27
DDX54-208	ENST00000551344	KDM5D	Q9BY66	1539 aa		29.23	■■■□□ 2.27
DDX54-208	ENST00000551344	EIF2AK4	Q9P2K8	1649 aa	Known RBP	29.22	■■■□□ 2.27
DDX54-208	ENST00000551344	PPARGC1B	Q86YN6	1023 aa	Known RBP	29.21	■■■□□ 2.27
DDX54-208	ENST00000551344	NCOA1	Q15788	1441 aa		29.2	■■■□□ 2.26
DDX54-208	ENST00000551344	ERBIN	Q96RT1	1412 aa		29.2	■■■□□ 2.26
DDX54-208	ENST00000551344	RNF17	Q9BXT8	1623 aa	Known RBP	29.19	■■■□□ 2.26
DDX54-208	ENST00000551344	DMRT2	Q9Y5R5	561 aa		29.18	■■■□□ 2.26
DDX54-208	ENST00000551344	FBXO31	Q5XUX0	539 aa	Predicted RBP	29.16	■■■□□ 2.26
DDX54-208	ENST00000551344	PZP	P20742	1482 aa		29.16	■■■□□ 2.26
DDX54-208	ENST00000551344	ADGRL2	O95490	1459 aa		29.14	■■■□□ 2.26
DDX54-208	ENST00000551344	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	29.11	■■■□□ 2.25
DDX54-208	ENST00000551344	ABCC3	O15438	1527 aa		29.1	■■■□□ 2.25
DDX54-208	ENST00000551344	TNR	Q92752	1358 aa		29.1	■■■□□ 2.25
DDX54-208	ENST00000551344	MROH1	Q8NDA8	1641 aa		29.09	■■■□□ 2.25
DDX54-208	ENST00000551344	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	29.08	■■■□□ 2.25
DDX54-208	ENST00000551344	ZC3H13	Q5T200	1668 aa	Known RBP	29.07	■■■□□ 2.24
DDX54-208	ENST00000551344	STRC	Q7RTU9	1775 aa		29.06	■■■□□ 2.24
DDX54-208	ENST00000551344	KANK1	Q14678	1352 aa		29.05	■■■□□ 2.24
DDX54-208	ENST00000551344	MYO3A	Q8NEV4	1616 aa		29.05	■■■□□ 2.24
DDX54-208	ENST00000551344	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	29.04	■■■□□ 2.24
DDX54-208	ENST00000551344	PRDM15	P57071	1507 aa	Predicted RBP	29.04	■■■□□ 2.24
DDX54-208	ENST00000551344	A2ML1	A8K2U0	1454 aa		29.04	■■■□□ 2.24
DDX54-208	ENST00000551344	ZNF142	P52746	1687 aa	Predicted RBP	29.02	■■■□□ 2.24
DDX54-208	ENST00000551344	PTPRT	O14522	1441 aa		29.02	■■■□□ 2.24
DDX54-208	ENST00000551344	ANKRD50	Q9ULJ7	1429 aa		29.02	■■■□□ 2.24
DDX54-208	ENST00000551344	CAMSAP1	Q5T5Y3	1602 aa		29.02	■■■□□ 2.24
DDX54-208	ENST00000551344	ROCK1	Q13464	1354 aa		29.01	■■■□□ 2.24
DDX54-208	ENST00000551344	PKD2	Q13563	968 aa		29	■■■□□ 2.23
DDX54-208	ENST00000551344	ARHGAP31	Q2M1Z3	1444 aa		29	■■■□□ 2.23
DDX54-208	ENST00000551344	DEPDC5	O75140	1603 aa		28.99	■■■□□ 2.23
DDX54-208	ENST00000551344	PLA2R1	Q13018	1463 aa		28.98	■■■□□ 2.23
DDX54-208	ENST00000551344	NLRP1	Q9C000	1473 aa		28.98	■■■□□ 2.23
DDX54-208	ENST00000551344	ITGAE	P38570	1179 aa		28.98	■■■□□ 2.23
DDX54-208	ENST00000551344	NCKAP5L	Q9HCH0	1330 aa		28.96	■■■□□ 2.23
DDX54-208	ENST00000551344	THEMIS	Q8N1K5	641 aa	Predicted RBP	28.96	■■■□□ 2.23
DDX54-208	ENST00000551344	CEP152	O94986	1710 aa		28.95	■■■□□ 2.23
DDX54-208	ENST00000551344	ILDR1	Q86SU0	546 aa	Predicted RBP	28.95	■■■□□ 2.22
DDX54-208	ENST00000551344	ERVK-7	P63135	1459 aa		28.95	■■■□□ 2.22
DDX54-208	ENST00000551344	SPATA31D1	Q6ZQQ2	1576 aa		28.95	■■■□□ 2.22
DDX54-208	ENST00000551344	RRBP1	Q9P2E9	1410 aa	Known RBP	28.94	■■■□□ 2.22
DDX54-208	ENST00000551344	LMTK2	Q8IWU2	1503 aa		28.92	■■■□□ 2.22
DDX54-208	ENST00000551344	VWDE	Q8N2E2	1590 aa		28.92	■■■□□ 2.22
DDX54-208	ENST00000551344	CFAP65	Q6ZU64	1925 aa	Known RBP	28.87	■■■□□ 2.21
DDX54-208	ENST00000551344	ANKLE2	Q86XL3	938 aa		28.87	■■■□□ 2.21
DDX54-208	ENST00000551344	CERK	Q8TCT0	537 aa		28.87	■■■□□ 2.21
DDX54-208	ENST00000551344	FBXO41	Q8TF61	875 aa		28.87	■■■□□ 2.21
DDX54-208	ENST00000551344	UGGT1	Q9NYU2	1555 aa		28.87	■■■□□ 2.21
DDX54-208	ENST00000551344	EFCAB6	Q5THR3	1501 aa		28.78	■■■□□ 2.2
DDX54-208	ENST00000551344	RPRD2	Q5VT52	1461 aa	Known RBP	28.77	■■■□□ 2.2
DDX54-208	ENST00000551344	IDI1	Q13907	227 aa		28.76	■■■□□ 2.19
DDX54-208	ENST00000551344	NOS1	P29475	1434 aa		28.76	■■■□□ 2.19
DDX54-208	ENST00000551344	UNC13B	O14795	1591 aa		28.75	■■■□□ 2.19
DDX54-208	ENST00000551344	SLC52A1	Q9NWF4	448 aa		28.75	■■■□□ 2.19
DDX54-208	ENST00000551344	NUP155	O75694	1391 aa		28.75	■■■□□ 2.19
DDX54-208	ENST00000551344	STAG3	Q9UJ98	1225 aa		28.73	■■■□□ 2.19
DDX54-208	ENST00000551344	MED14	O60244	1454 aa		28.71	■■■□□ 2.19
DDX54-208	ENST00000551344	TET3	O43151	1660 aa		28.7	■■■□□ 2.19
DDX54-208	ENST00000551344	LTBP4	Q8N2S1	1624 aa		28.7	■■■□□ 2.19
DDX54-208	ENST00000551344	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	28.69	■■■□□ 2.18
DDX54-208	ENST00000551344	UBR1	Q8IWV7	1749 aa		28.69	■■■□□ 2.18
DDX54-208	ENST00000551344	POLR1A	O95602	1720 aa	Predicted RBP	28.69	■■■□□ 2.18
DDX54-208	ENST00000551344	NEURL4	Q96JN8	1562 aa		28.68	■■■□□ 2.18
DDX54-208	ENST00000551344	TXNDC2	Q86VQ3	553 aa		28.67	■■■□□ 2.18
DDX54-208	ENST00000551344	NPHP4	O75161	1426 aa	Predicted RBP	28.67	■■■□□ 2.18
DDX54-208	ENST00000551344	NAIP	Q13075	1403 aa		28.67	■■■□□ 2.18
DDX54-208	ENST00000551344	EID1	Q9Y6B2	187 aa		28.66	■■■□□ 2.18
DDX54-208	ENST00000551344	SYNM	O15061	1565 aa		28.66	■■■□□ 2.18
DDX54-208	ENST00000551344	IQGAP3	Q86VI3	1631 aa		28.65	■■■□□ 2.18
DDX54-208	ENST00000551344	ARHGAP23	Q9P227	1491 aa		28.65	■■■□□ 2.18
DDX54-208	ENST00000551344	SLIT1	O75093	1534 aa		28.64	■■■□□ 2.18
DDX54-208	ENST00000551344	LTK	P29376	864 aa		28.64	■■■□□ 2.18
DDX54-208	ENST00000551344	PIK3C2B	O00750	1634 aa		28.64	■■■□□ 2.18
DDX54-208	ENST00000551344	GCC2	Q8IWJ2	1684 aa		28.64	■■■□□ 2.17
DDX54-208	ENST00000551344	TMEM2	Q9UHN6	1383 aa		28.63	■■■□□ 2.17
DDX54-208	ENST00000551344	HFM1	A2PYH4	1435 aa		28.61	■■■□□ 2.17
DDX54-208	ENST00000551344	SCAF11	Q99590	1463 aa	Known RBP	28.61	■■■□□ 2.17
DDX54-208	ENST00000551344	KDM5A	P29375	1690 aa	Known RBP	28.61	■■■□□ 2.17
DDX54-208	ENST00000551344	IQSEC2	Q5JU85	1478 aa		28.59	■■■□□ 2.17
DDX54-208	ENST00000551344		E9PCH4	1651 aa		28.57	■■■□□ 2.16
DDX54-208	ENST00000551344	IQGAP1	P46940	1657 aa		28.55	■■■□□ 2.16
DDX54-208	ENST00000551344	ADGRB3	O60242	1522 aa		28.53	■■■□□ 2.16
DDX54-208	ENST00000551344	HDGF	P51858	240 aa	Known RBP	28.53	■■■□□ 2.16
DDX54-208	ENST00000551344	TRIM52	Q96A61	297 aa		28.52	■■■□□ 2.16
DDX54-208	ENST00000551344	CPS1	P31327	1500 aa		28.49	■■■□□ 2.15
DDX54-208	ENST00000551344	CHGA	P10645	457 aa	Known RBP	28.48	■■■□□ 2.15
DDX54-208	ENST00000551344	TMEM131L	A2VDJ0	1609 aa		28.44	■■■□□ 2.14
DDX54-208	ENST00000551344	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	28.44	■■■□□ 2.14
DDX54-208	ENST00000551344	SLC4A1AP	Q9BWU0	796 aa	Known RBP	28.43	■■■□□ 2.14
DDX54-208	ENST00000551344	ZFYVE9	O95405	1425 aa		28.42	■■■□□ 2.14
DDX54-208	ENST00000551344	RIMS2	Q9UQ26	1411 aa		28.42	■■■□□ 2.14
DDX54-208	ENST00000551344	ACIN1	Q9UKV3	1341 aa	Known RBP	28.41	■■■□□ 2.14
DDX54-208	ENST00000551344	UBAP1L	F5GYI3	381 aa		28.4	■■■□□ 2.14
DDX54-208	ENST00000551344	PPP1R15A	O75807	674 aa	Predicted RBP	28.4	■■■□□ 2.14

Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms