RNA–Protein interactions for RNA: ENST00000550914.6

PTCH1-221, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-221ENST00000550914 DNMT1P26358 1616 aaKnown RBP20.47■□□□□ 0.87
PTCH1-221ENST00000550914 KIF3BO15066 747 aa20.47■□□□□ 0.87
PTCH1-221ENST00000550914 LRRC9Q6ZRR7 1453 aa20.47■□□□□ 0.87
PTCH1-221ENST00000550914 PZPP20742 1482 aa20.46■□□□□ 0.87
PTCH1-221ENST00000550914 MAP3K1Q13233 1512 aa20.46■□□□□ 0.87
PTCH1-221ENST00000550914 TSPY4P0CV99 314 aa20.44■□□□□ 0.86
PTCH1-221ENST00000550914 TSPY10P0CW01 314 aa20.44■□□□□ 0.86
PTCH1-221ENST00000550914 MAST1Q9Y2H9 1570 aa20.43■□□□□ 0.86
PTCH1-221ENST00000550914 POLR1AO95602 1720 aaPredicted RBP20.43■□□□□ 0.86
PTCH1-221ENST00000550914 TNRQ92752 1358 aa20.43■□□□□ 0.86
PTCH1-221ENST00000550914 ZNF335Q9H4Z2 1342 aaPredicted RBP20.42■□□□□ 0.86
PTCH1-221ENST00000550914 WASHC2CQ9Y4E1 1318 aa20.42■□□□□ 0.86
PTCH1-221ENST00000550914 RNF17Q9BXT8 1623 aaKnown RBP20.41■□□□□ 0.86
PTCH1-221ENST00000550914 MIA2Q96PC5 1412 aa20.39■□□□□ 0.85
PTCH1-221ENST00000550914 ZC3H13Q5T200 1668 aaKnown RBP20.38■□□□□ 0.85
PTCH1-221ENST00000550914 EIF2AK4Q9P2K8 1649 aaKnown RBP20.38■□□□□ 0.85
PTCH1-221ENST00000550914 FBXO31Q5XUX0 539 aaPredicted RBP20.38■□□□□ 0.85
PTCH1-221ENST00000550914 NLRP1Q9C000 1473 aa20.37■□□□□ 0.85
PTCH1-221ENST00000550914 DISP3Q9P2K9 1392 aa20.36■□□□□ 0.85
PTCH1-221ENST00000550914 NEURL4Q96JN8 1562 aa20.36■□□□□ 0.85
PTCH1-221ENST00000550914 MYOM3Q5VTT5 1437 aa20.36■□□□□ 0.85
PTCH1-221ENST00000550914 LOC105371045A0A1W2PR82 267 aa20.35■□□□□ 0.85
PTCH1-221ENST00000550914 ABCC3O15438 1527 aa20.33■□□□□ 0.85
PTCH1-221ENST00000550914 THEMISQ8N1K5 641 aaPredicted RBP20.33■□□□□ 0.85
PTCH1-221ENST00000550914 DEPDC5O75140 1603 aa20.33■□□□□ 0.84
PTCH1-221ENST00000550914 SPATA31D1Q6ZQQ2 1576 aa20.33■□□□□ 0.84
PTCH1-221ENST00000550914 UBAP1LF5GYI3 381 aa20.32■□□□□ 0.84
PTCH1-221ENST00000550914 KANK4Q5T7N3 995 aaPredicted RBP20.32■□□□□ 0.84
PTCH1-221ENST00000550914 UGGT1Q9NYU2 1555 aa20.32■□□□□ 0.84
PTCH1-221ENST00000550914 CPS1P31327 1500 aa20.32■□□□□ 0.84
PTCH1-221ENST00000550914 ANKLE2Q86XL3 938 aa20.31■□□□□ 0.84
PTCH1-221ENST00000550914 MROH1Q8NDA8 1641 aa20.3■□□□□ 0.84
PTCH1-221ENST00000550914 MED14O60244 1454 aa20.3■□□□□ 0.84
PTCH1-221ENST00000550914 DUOX2Q9NRD8 1548 aa20.29■□□□□ 0.84
PTCH1-221ENST00000550914 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.29■□□□□ 0.84
PTCH1-221ENST00000550914 SHANK2Q9UPX8 1470 aa20.29■□□□□ 0.84
PTCH1-221ENST00000550914 CROCC2H7BZ55 1655 aa20.26■□□□□ 0.83
PTCH1-221ENST00000550914 ERVK-7P63135 1459 aa20.26■□□□□ 0.83
PTCH1-221ENST00000550914 CEP152O94986 1710 aa20.26■□□□□ 0.83
PTCH1-221ENST00000550914 CFAP65Q6ZU64 1925 aaKnown RBP20.25■□□□□ 0.83
PTCH1-221ENST00000550914 NPHP4O75161 1426 aaPredicted RBP20.25■□□□□ 0.83
PTCH1-221ENST00000550914 VWDEQ8N2E2 1590 aa20.25■□□□□ 0.83
PTCH1-221ENST00000550914 IQGAP1P46940 1657 aa20.24■□□□□ 0.83
PTCH1-221ENST00000550914 ILDR2Q71H61 639 aa20.24■□□□□ 0.83
PTCH1-221ENST00000550914 PTPN23Q9H3S7 1636 aa20.23■□□□□ 0.83
PTCH1-221ENST00000550914 PRDM15P57071 1507 aaPredicted RBP20.22■□□□□ 0.83
PTCH1-221ENST00000550914 ERBINQ96RT1 1412 aa20.22■□□□□ 0.83
PTCH1-221ENST00000550914 KIF15Q9NS87 1388 aa20.21■□□□□ 0.83
PTCH1-221ENST00000550914 ARHGAP31Q2M1Z3 1444 aa20.21■□□□□ 0.83
PTCH1-221ENST00000550914 UBR1Q8IWV7 1749 aa20.21■□□□□ 0.83
PTCH1-221ENST00000550914 ABCC5O15440 1437 aa20.2■□□□□ 0.82
PTCH1-221ENST00000550914 SOCS7O14512 581 aa20.2■□□□□ 0.82
PTCH1-221ENST00000550914 APLP2Q06481 763 aa20.2■□□□□ 0.82
PTCH1-221ENST00000550914 TOM1O60784 492 aa20.19■□□□□ 0.82
PTCH1-221ENST00000550914 DAPK1P53355 1430 aa20.17■□□□□ 0.82
PTCH1-221ENST00000550914 FGD6Q6ZV73 1430 aa20.16■□□□□ 0.82
PTCH1-221ENST00000550914 STRCP1A6NGW2 1772 aa20.14■□□□□ 0.81
PTCH1-221ENST00000550914 SYNMO15061 1565 aa20.14■□□□□ 0.81
PTCH1-221ENST00000550914 SLIT1O75093 1534 aa20.14■□□□□ 0.81
PTCH1-221ENST00000550914 ARHGAP23Q9P227 1491 aa20.13■□□□□ 0.81
PTCH1-221ENST00000550914 RRP7BPQ9NSQ0 103 aa20.13■□□□□ 0.81
PTCH1-221ENST00000550914 SCAF11Q99590 1463 aaKnown RBP20.12■□□□□ 0.81
PTCH1-221ENST00000550914 KANK1Q14678 1352 aa20.12■□□□□ 0.81
PTCH1-221ENST00000550914 KDM5AP29375 1690 aaKnown RBP20.11■□□□□ 0.81
PTCH1-221ENST00000550914 LMTK2Q8IWU2 1503 aa20.11■□□□□ 0.81
PTCH1-221ENST00000550914 ANKRD30AQ9BXX3 1397 aa20.1■□□□□ 0.81
PTCH1-221ENST00000550914 ALKQ9UM73 1620 aa20.1■□□□□ 0.81
PTCH1-221ENST00000550914 SCAF1Q9H7N4 1312 aaKnown RBP20.1■□□□□ 0.81
PTCH1-221ENST00000550914 HSPA1LP34931 641 aa20.1■□□□□ 0.81
PTCH1-221ENST00000550914 PIP4K2BP78356 416 aa20.1■□□□□ 0.81
PTCH1-221ENST00000550914 LRRC7Q96NW7 1537 aa20.1■□□□□ 0.81
PTCH1-221ENST00000550914 PIK3C2BO00750 1634 aa20.08■□□□□ 0.8
PTCH1-221ENST00000550914 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.06■□□□□ 0.8
PTCH1-221ENST00000550914 ADGRL2O95490 1459 aa20.05■□□□□ 0.8
PTCH1-221ENST00000550914 LTKP29376 864 aa20.05■□□□□ 0.8
PTCH1-221ENST00000550914 TXNDC2Q86VQ3 553 aa20.05■□□□□ 0.8
PTCH1-221ENST00000550914 EID1Q9Y6B2 187 aa20.05■□□□□ 0.8
PTCH1-221ENST00000550914 MED1Q15648 1581 aaPredicted RBP20.04■□□□□ 0.8
PTCH1-221ENST00000550914 TMEM2Q9UHN6 1383 aa20.03■□□□□ 0.8
PTCH1-221ENST00000550914 EFCAB6Q5THR3 1501 aa20.02■□□□□ 0.8
PTCH1-221ENST00000550914 CHIC2Q9UKJ5 165 aa20.02■□□□□ 0.8
PTCH1-221ENST00000550914 XIRP1Q702N8 1843 aaKnown RBP20■□□□□ 0.79
PTCH1-221ENST00000550914 NOS1P29475 1434 aa20■□□□□ 0.79
PTCH1-221ENST00000550914 STAG3Q9UJ98 1225 aa19.99■□□□□ 0.79
PTCH1-221ENST00000550914 IDI1Q13907 227 aa19.98■□□□□ 0.79
PTCH1-221ENST00000550914 RPRD2Q5VT52 1461 aaKnown RBP19.98■□□□□ 0.79
PTCH1-221ENST00000550914 ADGRB3O60242 1522 aa19.97■□□□□ 0.79
PTCH1-221ENST00000550914 SLC52A1Q9NWF4 448 aa19.96■□□□□ 0.79
PTCH1-221ENST00000550914 ANKRD50Q9ULJ7 1429 aa19.95■□□□□ 0.78
PTCH1-221ENST00000550914 TET3O43151 1660 aa19.95■□□□□ 0.78
PTCH1-221ENST00000550914 FAM50AQ14320 339 aaKnown RBP19.92■□□□□ 0.78
PTCH1-221ENST00000550914 GCC2Q8IWJ2 1684 aa19.91■□□□□ 0.78
PTCH1-221ENST00000550914 KCNA6P17658 529 aa19.9■□□□□ 0.78
PTCH1-221ENST00000550914 MYO5BQ9ULV0 1848 aa19.88■□□□□ 0.77
PTCH1-221ENST00000550914 UNC13BO14795 1591 aa19.88■□□□□ 0.77
PTCH1-221ENST00000550914 NWD1Q149M9 1564 aa19.88■□□□□ 0.77
PTCH1-221ENST00000550914 FAM135BQ49AJ0 1406 aa19.88■□□□□ 0.77
PTCH1-221ENST00000550914 NKTRP30414 1462 aaKnown RBP19.87■□□□□ 0.77
PTCH1-221ENST00000550914 TMEM94Q12767 1356 aa19.87■□□□□ 0.77
PTCH1-221ENST00000550914 PHF23Q9BUL5 403 aaPredicted RBP19.86■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms