RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 KDM5DQ9BY66 1539 aa16.91■□□□□ 0.3
VTI1BP3-201ENST00000550220 TNRQ92752 1358 aa16.91■□□□□ 0.3
VTI1BP3-201ENST00000550220 MAST1Q9Y2H9 1570 aa16.91■□□□□ 0.3
VTI1BP3-201ENST00000550220 FBXO31Q5XUX0 539 aaPredicted RBP16.91■□□□□ 0.3
VTI1BP3-201ENST00000550220 STRCQ7RTU9 1775 aa16.91■□□□□ 0.3
VTI1BP3-201ENST00000550220 CAMSAP1Q5T5Y3 1602 aa16.9■□□□□ 0.3
VTI1BP3-201ENST00000550220 PZPP20742 1482 aa16.9■□□□□ 0.3
VTI1BP3-201ENST00000550220 NCKAP5LQ9HCH0 1330 aa16.9■□□□□ 0.3
VTI1BP3-201ENST00000550220 A2ML1A8K2U0 1454 aa16.89■□□□□ 0.29
VTI1BP3-201ENST00000550220 THEMISQ8N1K5 641 aaPredicted RBP16.89■□□□□ 0.29
VTI1BP3-201ENST00000550220 CEP170BQ9Y4F5 1589 aaPredicted RBP16.87■□□□□ 0.29
VTI1BP3-201ENST00000550220 ABCC5O15440 1437 aa16.87■□□□□ 0.29
VTI1BP3-201ENST00000550220 FGD6Q6ZV73 1430 aa16.87■□□□□ 0.29
VTI1BP3-201ENST00000550220 SHANK2Q9UPX8 1470 aa16.86■□□□□ 0.29
VTI1BP3-201ENST00000550220 DUOX2Q9NRD8 1548 aa16.86■□□□□ 0.29
VTI1BP3-201ENST00000550220 RRP7BPQ9NSQ0 103 aa16.86■□□□□ 0.29
VTI1BP3-201ENST00000550220 KIF15Q9NS87 1388 aa16.86■□□□□ 0.29
VTI1BP3-201ENST00000550220 ANKLE2Q86XL3 938 aa16.85■□□□□ 0.29
VTI1BP3-201ENST00000550220 TCOF1Q13428 1488 aaKnown RBP16.85■□□□□ 0.29
VTI1BP3-201ENST00000550220 NLRP1Q9C000 1473 aa16.85■□□□□ 0.29
VTI1BP3-201ENST00000550220 ANKRD30AQ9BXX3 1397 aa16.84■□□□□ 0.29
VTI1BP3-201ENST00000550220 ERBINQ96RT1 1412 aa16.84■□□□□ 0.29
VTI1BP3-201ENST00000550220 MYO3AQ8NEV4 1616 aa16.84■□□□□ 0.29
VTI1BP3-201ENST00000550220 ZNF142P52746 1687 aaPredicted RBP16.83■□□□□ 0.28
VTI1BP3-201ENST00000550220 DAPK1P53355 1430 aa16.83■□□□□ 0.28
VTI1BP3-201ENST00000550220 EIF2AK4Q9P2K8 1649 aaKnown RBP16.82■□□□□ 0.28
VTI1BP3-201ENST00000550220 PTPN23Q9H3S7 1636 aa16.81■□□□□ 0.28
VTI1BP3-201ENST00000550220 IQSEC2Q5JU85 1478 aa16.81■□□□□ 0.28
VTI1BP3-201ENST00000550220 KANK1Q14678 1352 aa16.81■□□□□ 0.28
VTI1BP3-201ENST00000550220 RNF17Q9BXT8 1623 aaKnown RBP16.81■□□□□ 0.28
VTI1BP3-201ENST00000550220 ABCC3O15438 1527 aa16.8■□□□□ 0.28
VTI1BP3-201ENST00000550220 LTBP4Q8N2S1 1624 aa16.79■□□□□ 0.28
VTI1BP3-201ENST00000550220 FAM50AQ14320 339 aaKnown RBP16.79■□□□□ 0.28
VTI1BP3-201ENST00000550220 CHIC2Q9UKJ5 165 aa16.79■□□□□ 0.28
VTI1BP3-201ENST00000550220 DNMT1P26358 1616 aaKnown RBP16.78■□□□□ 0.28
VTI1BP3-201ENST00000550220 ZNF335Q9H4Z2 1342 aaPredicted RBP16.78■□□□□ 0.28
VTI1BP3-201ENST00000550220 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.78■□□□□ 0.28
VTI1BP3-201ENST00000550220 ARHGAP31Q2M1Z3 1444 aa16.78■□□□□ 0.28
VTI1BP3-201ENST00000550220 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.77■□□□□ 0.28
VTI1BP3-201ENST00000550220 ZC3H13Q5T200 1668 aaKnown RBP16.77■□□□□ 0.28
VTI1BP3-201ENST00000550220 UGGT1Q9NYU2 1555 aa16.76■□□□□ 0.27
VTI1BP3-201ENST00000550220 ERVK-7P63135 1459 aa16.74■□□□□ 0.27
VTI1BP3-201ENST00000550220 SPATA31D1Q6ZQQ2 1576 aa16.74■□□□□ 0.27
VTI1BP3-201ENST00000550220 PRDM15P57071 1507 aaPredicted RBP16.71■□□□□ 0.27
VTI1BP3-201ENST00000550220 MROH1Q8NDA8 1641 aa16.71■□□□□ 0.27
VTI1BP3-201ENST00000550220 MED14O60244 1454 aa16.71■□□□□ 0.27
VTI1BP3-201ENST00000550220 ADGRL2O95490 1459 aa16.71■□□□□ 0.27
VTI1BP3-201ENST00000550220 NPHP4O75161 1426 aaPredicted RBP16.7■□□□□ 0.26
VTI1BP3-201ENST00000550220 CROCC2H7BZ55 1655 aa16.7■□□□□ 0.26
VTI1BP3-201ENST00000550220 STAG3Q9UJ98 1225 aa16.7■□□□□ 0.26
VTI1BP3-201ENST00000550220 EID1Q9Y6B2 187 aa16.7■□□□□ 0.26
VTI1BP3-201ENST00000550220 UBAP1LF5GYI3 381 aa16.69■□□□□ 0.26
VTI1BP3-201ENST00000550220 ANKRD50Q9ULJ7 1429 aa16.68■□□□□ 0.26
VTI1BP3-201ENST00000550220 CPS1P31327 1500 aa16.67■□□□□ 0.26
VTI1BP3-201ENST00000550220 LMTK2Q8IWU2 1503 aa16.67■□□□□ 0.26
VTI1BP3-201ENST00000550220 TOM1O60784 492 aa16.67■□□□□ 0.26
VTI1BP3-201ENST00000550220 TXNDC2Q86VQ3 553 aa16.67■□□□□ 0.26
VTI1BP3-201ENST00000550220 SLC52A1Q9NWF4 448 aa16.67■□□□□ 0.26
VTI1BP3-201ENST00000550220 DEPDC5O75140 1603 aa16.66■□□□□ 0.26
VTI1BP3-201ENST00000550220 ROCK1Q13464 1354 aa16.64■□□□□ 0.26
VTI1BP3-201ENST00000550220 NEURL4Q96JN8 1562 aa16.64■□□□□ 0.25
VTI1BP3-201ENST00000550220 IDI1Q13907 227 aa16.64■□□□□ 0.25
VTI1BP3-201ENST00000550220 POLR1AO95602 1720 aaPredicted RBP16.62■□□□□ 0.25
VTI1BP3-201ENST00000550220 SCAF11Q99590 1463 aaKnown RBP16.62■□□□□ 0.25
VTI1BP3-201ENST00000550220 VWDEQ8N2E2 1590 aa16.62■□□□□ 0.25
VTI1BP3-201ENST00000550220 CEP152O94986 1710 aa16.62■□□□□ 0.25
VTI1BP3-201ENST00000550220 LTKP29376 864 aa16.61■□□□□ 0.25
VTI1BP3-201ENST00000550220 HDGFP51858 240 aaKnown RBP16.61■□□□□ 0.25
VTI1BP3-201ENST00000550220 TMEM2Q9UHN6 1383 aa16.61■□□□□ 0.25
VTI1BP3-201ENST00000550220 RPRD2Q5VT52 1461 aaKnown RBP16.61■□□□□ 0.25
VTI1BP3-201ENST00000550220 ARHGAP23Q9P227 1491 aa16.61■□□□□ 0.25
VTI1BP3-201ENST00000550220 NOS1P29475 1434 aa16.6■□□□□ 0.25
VTI1BP3-201ENST00000550220 SLIT1O75093 1534 aa16.6■□□□□ 0.25
VTI1BP3-201ENST00000550220 IQGAP1P46940 1657 aa16.56■□□□□ 0.24
VTI1BP3-201ENST00000550220 EFCAB6Q5THR3 1501 aa16.56■□□□□ 0.24
VTI1BP3-201ENST00000550220 ITGAEP38570 1179 aa16.56■□□□□ 0.24
VTI1BP3-201ENST00000550220 UBR1Q8IWV7 1749 aa16.56■□□□□ 0.24
VTI1BP3-201ENST00000550220 CFAP65Q6ZU64 1925 aaKnown RBP16.55■□□□□ 0.24
VTI1BP3-201ENST00000550220 DISP3Q9P2K9 1392 aa16.54■□□□□ 0.24
VTI1BP3-201ENST00000550220 SCAF1Q9H7N4 1312 aaKnown RBP16.54■□□□□ 0.24
VTI1BP3-201ENST00000550220 PIP4K2BP78356 416 aa16.54■□□□□ 0.24
VTI1BP3-201ENST00000550220 PPARGC1BQ86YN6 1023 aaKnown RBP16.54■□□□□ 0.24
VTI1BP3-201ENST00000550220 NUP155O75694 1391 aa16.52■□□□□ 0.24
VTI1BP3-201ENST00000550220 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.52■□□□□ 0.24
VTI1BP3-201ENST00000550220 KDM5AP29375 1690 aaKnown RBP16.52■□□□□ 0.23
VTI1BP3-201ENST00000550220 KCNA6P17658 529 aa16.51■□□□□ 0.23
VTI1BP3-201ENST00000550220 BCANQ96GW7 911 aa16.51■□□□□ 0.23
VTI1BP3-201ENST00000550220 PIK3C2BO00750 1634 aa16.51■□□□□ 0.23
VTI1BP3-201ENST00000550220 LRRC7Q96NW7 1537 aa16.5■□□□□ 0.23
VTI1BP3-201ENST00000550220 SYNMO15061 1565 aa16.49■□□□□ 0.23
VTI1BP3-201ENST00000550220 PPP1R15AO75807 674 aaPredicted RBP16.49■□□□□ 0.23
VTI1BP3-201ENST00000550220 HSPA1LP34931 641 aa16.48■□□□□ 0.23
VTI1BP3-201ENST00000550220 TET3O43151 1660 aa16.47■□□□□ 0.23
VTI1BP3-201ENST00000550220 RRBP1Q9P2E9 1410 aaKnown RBP16.47■□□□□ 0.23
VTI1BP3-201ENST00000550220 ADGRB3O60242 1522 aa16.47■□□□□ 0.23
VTI1BP3-201ENST00000550220 CHGAP10645 457 aaKnown RBP16.47■□□□□ 0.23
VTI1BP3-201ENST00000550220 SLC26A8Q96RN1 970 aa16.47■□□□□ 0.23
VTI1BP3-201ENST00000550220 UNC13BO14795 1591 aa16.47■□□□□ 0.23
VTI1BP3-201ENST00000550220 PLEKHG1Q9ULL1 1385 aa16.44■□□□□ 0.22
VTI1BP3-201ENST00000550220 PROSER2Q86WR7 435 aaPredicted RBP16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms