RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 EIF2AK4Q9P2K8 1649 aaKnown RBP19.11■□□□□ 0.65
PTCH1-215ENST00000547672 MAGI2Q86UL8 1455 aa19.11■□□□□ 0.65
PTCH1-215ENST00000547672 L3MBTL2Q969R5 705 aa19.1■□□□□ 0.65
PTCH1-215ENST00000547672 KDM5CP41229 1560 aa19.1■□□□□ 0.65
PTCH1-215ENST00000547672 DIP2BQ9P265 1576 aa19.06■□□□□ 0.64
PTCH1-215ENST00000547672 KIF3BO15066 747 aa19.06■□□□□ 0.64
PTCH1-215ENST00000547672 A2MP01023 1474 aa19.05■□□□□ 0.64
PTCH1-215ENST00000547672 KIDINS220Q9ULH0 1771 aa19.05■□□□□ 0.64
PTCH1-215ENST00000547672 HECW2Q9P2P5 1572 aa19.05■□□□□ 0.64
PTCH1-215ENST00000547672 ATP10AO60312 1499 aa19.04■□□□□ 0.64
PTCH1-215ENST00000547672 DEPDC5O75140 1603 aa19.03■□□□□ 0.64
PTCH1-215ENST00000547672 CCDC144AA2RUR9 1427 aa19.03■□□□□ 0.64
PTCH1-215ENST00000547672 STAC3Q96MF2 364 aa19.03■□□□□ 0.64
PTCH1-215ENST00000547672 EIF4G2P78344 907 aaKnown RBP eCLIP18.98■□□□□ 0.63
PTCH1-215ENST00000547672 RAPGEF3O95398 923 aa18.97■□□□□ 0.63
PTCH1-215ENST00000547672 TET3O43151 1660 aa18.97■□□□□ 0.63
PTCH1-215ENST00000547672 PRDM15P57071 1507 aaPredicted RBP18.96■□□□□ 0.63
PTCH1-215ENST00000547672 VWDEQ8N2E2 1590 aa18.96■□□□□ 0.63
PTCH1-215ENST00000547672 BCORL1Q5H9F3 1711 aa18.96■□□□□ 0.63
PTCH1-215ENST00000547672 RICTORQ6R327 1708 aa18.96■□□□□ 0.63
PTCH1-215ENST00000547672 RNF17Q9BXT8 1623 aaKnown RBP18.94■□□□□ 0.62
PTCH1-215ENST00000547672 UHRF1BP1Q6BDS2 1440 aa18.93■□□□□ 0.62
PTCH1-215ENST00000547672 TRHP20396 242 aaPredicted RBP18.93■□□□□ 0.62
PTCH1-215ENST00000547672 PPP6R1Q9UPN7 881 aa18.93■□□□□ 0.62
PTCH1-215ENST00000547672 ZMYM4Q5VZL5 1548 aa18.93■□□□□ 0.62
PTCH1-215ENST00000547672 LMTK2Q8IWU2 1503 aa18.93■□□□□ 0.62
PTCH1-215ENST00000547672 PTPRTO14522 1441 aa18.91■□□□□ 0.62
PTCH1-215ENST00000547672 PLA2R1Q13018 1463 aa18.9■□□□□ 0.62
PTCH1-215ENST00000547672 DCAF11Q8TEB1 546 aa18.89■□□□□ 0.61
PTCH1-215ENST00000547672 WASHC2CQ9Y4E1 1318 aa18.89■□□□□ 0.61
PTCH1-215ENST00000547672 ABCA6Q8N139 1617 aa18.89■□□□□ 0.61
PTCH1-215ENST00000547672 TSPOAP1O95153 1857 aa18.88■□□□□ 0.61
PTCH1-215ENST00000547672 GGT6Q6P531 493 aa18.88■□□□□ 0.61
PTCH1-215ENST00000547672 TRPM2O94759 1503 aa18.88■□□□□ 0.61
PTCH1-215ENST00000547672 E9PCH4 1651 aa18.88■□□□□ 0.61
PTCH1-215ENST00000547672 NBPF8Q3BBV2 869 aa18.87■□□□□ 0.61
PTCH1-215ENST00000547672 DIP2CQ9Y2E4 1556 aa18.87■□□□□ 0.61
PTCH1-215ENST00000547672 KIF13AQ9H1H9 1805 aa18.86■□□□□ 0.61
PTCH1-215ENST00000547672 PPRC1Q5VV67 1664 aaKnown RBP18.86■□□□□ 0.61
PTCH1-215ENST00000547672 SPHKAPQ2M3C7 1700 aa18.86■□□□□ 0.61
PTCH1-215ENST00000547672 MROH1Q8NDA8 1641 aa18.85■□□□□ 0.61
PTCH1-215ENST00000547672 NEURL4Q96JN8 1562 aa18.85■□□□□ 0.61
PTCH1-215ENST00000547672 HSPA5P11021 654 aaKnown RBP18.85■□□□□ 0.61
PTCH1-215ENST00000547672 FRMPD1Q5SYB0 1578 aa18.85■□□□□ 0.61
PTCH1-215ENST00000547672 EFCAB6Q5THR3 1501 aa18.84■□□□□ 0.61
PTCH1-215ENST00000547672 REREQ9P2R6 1566 aa18.84■□□□□ 0.61
PTCH1-215ENST00000547672 KDM2AQ9Y2K7 1162 aa18.83■□□□□ 0.6
PTCH1-215ENST00000547672 RGL3Q3MIN7 710 aa18.82■□□□□ 0.6
PTCH1-215ENST00000547672 ZNF326Q5BKZ1 582 aaKnown RBP18.82■□□□□ 0.6
PTCH1-215ENST00000547672 RALGAPBQ86X10 1494 aa18.82■□□□□ 0.6
PTCH1-215ENST00000547672 ZC3H13Q5T200 1668 aaKnown RBP18.81■□□□□ 0.6
PTCH1-215ENST00000547672 AGLP35573 1532 aa18.8■□□□□ 0.6
PTCH1-215ENST00000547672 ARID4BQ4LE39 1312 aaPredicted RBP18.8■□□□□ 0.6
PTCH1-215ENST00000547672 ARHGAP31Q2M1Z3 1444 aa18.8■□□□□ 0.6
PTCH1-215ENST00000547672 CARD11Q9BXL7 1154 aa18.79■□□□□ 0.6
PTCH1-215ENST00000547672 CNTLNQ9NXG0 1405 aa18.79■□□□□ 0.6
PTCH1-215ENST00000547672 YEATS2Q9ULM3 1422 aa18.79■□□□□ 0.6
PTCH1-215ENST00000547672 CEP152O94986 1710 aa18.78■□□□□ 0.6
PTCH1-215ENST00000547672 SPATA31E1Q6ZUB1 1445 aa18.78■□□□□ 0.6
PTCH1-215ENST00000547672 DDX10Q13206 875 aaKnown RBP18.77■□□□□ 0.6
PTCH1-215ENST00000547672 MIER1Q8N108 512 aa18.77■□□□□ 0.6
PTCH1-215ENST00000547672 ABCC3O15438 1527 aa18.77■□□□□ 0.6
PTCH1-215ENST00000547672 PRAG1Q86YV5 1406 aa18.76■□□□□ 0.59
PTCH1-215ENST00000547672 RPGRIP1LQ68CZ1 1315 aa18.75■□□□□ 0.59
PTCH1-215ENST00000547672 ROCK2O75116 1388 aaKnown RBP18.75■□□□□ 0.59
PTCH1-215ENST00000547672 USP47Q96K76 1375 aa18.74■□□□□ 0.59
PTCH1-215ENST00000547672 SLC24A1O60721 1099 aa18.74■□□□□ 0.59
PTCH1-215ENST00000547672 HIRIP3Q9BW71 556 aaPredicted RBP18.74■□□□□ 0.59
PTCH1-215ENST00000547672 SLC52A1Q9NWF4 448 aa18.74■□□□□ 0.59
PTCH1-215ENST00000547672 KIF1BO60333 1816 aa18.74■□□□□ 0.59
PTCH1-215ENST00000547672 CLTCL1P53675 1640 aa18.72■□□□□ 0.59
PTCH1-215ENST00000547672 NPATQ14207 1427 aa18.72■□□□□ 0.59
PTCH1-215ENST00000547672 CAMSAP1Q5T5Y3 1602 aa18.71■□□□□ 0.59
PTCH1-215ENST00000547672 ANP32CO43423 234 aa18.71■□□□□ 0.59
PTCH1-215ENST00000547672 ESF1Q9H501 851 aaKnown RBP18.71■□□□□ 0.59
PTCH1-215ENST00000547672 GPRASP1Q5JY77 1395 aa18.7■□□□□ 0.58
PTCH1-215ENST00000547672 LAMC1P11047 1609 aa18.7■□□□□ 0.58
PTCH1-215ENST00000547672 NOS1P29475 1434 aa18.69■□□□□ 0.58
PTCH1-215ENST00000547672 ARHGEF40Q8TER5 1519 aa18.69■□□□□ 0.58
PTCH1-215ENST00000547672 TRPM1Q7Z4N2 1603 aa18.68■□□□□ 0.58
PTCH1-215ENST00000547672 CCDC7Q96M83 1385 aa18.67■□□□□ 0.58
PTCH1-215ENST00000547672 WASHC2AQ641Q2 1341 aa18.66■□□□□ 0.58
PTCH1-215ENST00000547672 MYOM2P54296 1465 aa18.65■□□□□ 0.58
PTCH1-215ENST00000547672 CENPBP07199 599 aaPredicted RBP18.65■□□□□ 0.58
PTCH1-215ENST00000547672 POLR1AO95602 1720 aaPredicted RBP18.65■□□□□ 0.58
PTCH1-215ENST00000547672 COL17A1Q9UMD9 1497 aaPredicted RBP18.65■□□□□ 0.58
PTCH1-215ENST00000547672 VGFO15240 615 aaPredicted RBP18.63■□□□□ 0.57
PTCH1-215ENST00000547672 CHGAP10645 457 aaKnown RBP18.63■□□□□ 0.57
PTCH1-215ENST00000547672 KIAA1210Q9ULL0 1709 aa18.63■□□□□ 0.57
PTCH1-215ENST00000547672 CCER2I3L3R5 266 aa18.62■□□□□ 0.57
PTCH1-215ENST00000547672 ADGRB3O60242 1522 aa18.6■□□□□ 0.57
PTCH1-215ENST00000547672 EIF3AQ14152 1382 aaKnown RBP18.6■□□□□ 0.57
PTCH1-215ENST00000547672 ST20-MTHFSA0A0A6YYL1 179 aa18.6■□□□□ 0.57
PTCH1-215ENST00000547672 CDCA8Q53HL2 280 aa18.6■□□□□ 0.57
PTCH1-215ENST00000547672 CFAP65Q6ZU64 1925 aaKnown RBP18.59■□□□□ 0.57
PTCH1-215ENST00000547672 KIF7Q2M1P5 1343 aa18.59■□□□□ 0.57
PTCH1-215ENST00000547672 MADDQ8WXG6 1647 aa18.59■□□□□ 0.57
PTCH1-215ENST00000547672 NBPF1Q3BBV0 1214 aa18.58■□□□□ 0.56
PTCH1-215ENST00000547672 PIK3C2BO00750 1634 aa18.58■□□□□ 0.56
PTCH1-215ENST00000547672 TMF1P82094 1093 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms