RNA–Protein interactions for RNA: ENST00000547637.1

SMARCD1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, human

TSL 2

Gene SMARCD1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMARCD1-204	ENST00000547637	FAM135A	Q9P2D6	1515 aa		36.47	■■■■□ 3.43
SMARCD1-204	ENST00000547637	A2ML1	A8K2U0	1454 aa		36.45	■■■■□ 3.43
SMARCD1-204	ENST00000547637	LRRC9	Q6ZRR7	1453 aa		36.45	■■■■□ 3.43
SMARCD1-204	ENST00000547637	ARHGEF5	Q12774	1597 aa		36.44	■■■■□ 3.42
SMARCD1-204	ENST00000547637	TNR	Q92752	1358 aa		36.42	■■■■□ 3.42
SMARCD1-204	ENST00000547637	KDM5D	Q9BY66	1539 aa		36.42	■■■■□ 3.42
SMARCD1-204	ENST00000547637	TCOF1	Q13428	1488 aa	Known RBP	36.42	■■■■□ 3.42
SMARCD1-204	ENST00000547637	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	36.4	■■■■□ 3.42
SMARCD1-204	ENST00000547637	FBXO31	Q5XUX0	539 aa	Predicted RBP	36.38	■■■■□ 3.41
SMARCD1-204	ENST00000547637	PZP	P20742	1482 aa		36.37	■■■■□ 3.41
SMARCD1-204	ENST00000547637	MAP3K1	Q13233	1512 aa		36.35	■■■■□ 3.41
SMARCD1-204	ENST00000547637	DNMT1	P26358	1616 aa	Known RBP	36.35	■■■■□ 3.41
SMARCD1-204	ENST00000547637	APLP2	Q06481	763 aa		36.34	■■■■□ 3.41
SMARCD1-204	ENST00000547637	DISP3	Q9P2K9	1392 aa		36.34	■■■■□ 3.41
SMARCD1-204	ENST00000547637	THEMIS	Q8N1K5	641 aa	Predicted RBP	36.33	■■■■□ 3.41
SMARCD1-204	ENST00000547637	MIA2	Q96PC5	1412 aa		36.31	■■■■□ 3.4
SMARCD1-204	ENST00000547637	ANKLE2	Q86XL3	938 aa		36.3	■■■■□ 3.4
SMARCD1-204	ENST00000547637	UBAP1L	F5GYI3	381 aa		36.29	■■■■□ 3.4
SMARCD1-204	ENST00000547637	KANK4	Q5T7N3	995 aa	Predicted RBP	36.29	■■■■□ 3.4
SMARCD1-204	ENST00000547637	MYOM3	Q5VTT5	1437 aa		36.26	■■■■□ 3.4
SMARCD1-204	ENST00000547637	NLRP1	Q9C000	1473 aa		36.25	■■■■□ 3.39
SMARCD1-204	ENST00000547637	MAST1	Q9Y2H9	1570 aa		36.25	■■■■□ 3.39
SMARCD1-204	ENST00000547637	POLR1A	O95602	1720 aa	Predicted RBP	36.2	■■■■□ 3.38
SMARCD1-204	ENST00000547637	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	36.19	■■■■□ 3.38	7e-6	■■■□□ 16.5
SMARCD1-204	ENST00000547637	UGGT1	Q9NYU2	1555 aa		36.19	■■■■□ 3.38
SMARCD1-204	ENST00000547637	RNF17	Q9BXT8	1623 aa	Known RBP	36.17	■■■■□ 3.38
SMARCD1-204	ENST00000547637	EIF2AK4	Q9P2K8	1649 aa	Known RBP	36.16	■■■■□ 3.38
SMARCD1-204	ENST00000547637	ZC3H13	Q5T200	1668 aa	Known RBP	36.16	■■■■□ 3.38
SMARCD1-204	ENST00000547637	ABCC3	O15438	1527 aa		36.12	■■■■□ 3.37
SMARCD1-204	ENST00000547637	TOM1	O60784	492 aa		36.11	■■■■□ 3.37
SMARCD1-204	ENST00000547637	CPS1	P31327	1500 aa		36.11	■■■■□ 3.37
SMARCD1-204	ENST00000547637	DUOX2	Q9NRD8	1548 aa		36.11	■■■■□ 3.37
SMARCD1-204	ENST00000547637	SHANK2	Q9UPX8	1470 aa		36.09	■■■■□ 3.37
SMARCD1-204	ENST00000547637	NEURL4	Q96JN8	1562 aa		36.08	■■■■□ 3.37
SMARCD1-204	ENST00000547637	NPHP4	O75161	1426 aa	Predicted RBP	36.07	■■■■□ 3.36
SMARCD1-204	ENST00000547637	SPATA31D1	Q6ZQQ2	1576 aa		36.06	■■■■□ 3.36
SMARCD1-204	ENST00000547637	SCAF1	Q9H7N4	1312 aa	Known RBP	36.05	■■■■□ 3.36
SMARCD1-204	ENST00000547637	DEPDC5	O75140	1603 aa		36.04	■■■■□ 3.36
SMARCD1-204	ENST00000547637	MED14	O60244	1454 aa		36.04	■■■■□ 3.36
SMARCD1-204	ENST00000547637	KIF15	Q9NS87	1388 aa		36.03	■■■■□ 3.36
SMARCD1-204	ENST00000547637	RRP7BP	Q9NSQ0	103 aa		36.03	■■■■□ 3.36
SMARCD1-204	ENST00000547637	ILDR2	Q71H61	639 aa		36.02	■■■■□ 3.36
SMARCD1-204	ENST00000547637	ERVK-7	P63135	1459 aa		36.02	■■■■□ 3.36
SMARCD1-204	ENST00000547637	CFAP65	Q6ZU64	1925 aa	Known RBP	36	■■■■□ 3.35
SMARCD1-204	ENST00000547637	ERBIN	Q96RT1	1412 aa		36	■■■■□ 3.35
SMARCD1-204	ENST00000547637	PTPN23	Q9H3S7	1636 aa		35.98	■■■■□ 3.35
SMARCD1-204	ENST00000547637	ABCC5	O15440	1437 aa		35.98	■■■■□ 3.35
SMARCD1-204	ENST00000547637	PIP4K2B	P78356	416 aa		35.97	■■■■□ 3.35
SMARCD1-204	ENST00000547637	KANK1	Q14678	1352 aa		35.97	■■■■□ 3.35
SMARCD1-204	ENST00000547637	SOCS7	O14512	581 aa		35.96	■■■■□ 3.35
SMARCD1-204	ENST00000547637	MROH1	Q8NDA8	1641 aa		35.96	■■■■□ 3.35
SMARCD1-204	ENST00000547637	CEP152	O94986	1710 aa		35.96	■■■■□ 3.35
SMARCD1-204	ENST00000547637	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	35.95	■■■■□ 3.35	2e-9	■■□□□ 12.2
SMARCD1-204	ENST00000547637	IQGAP1	P46940	1657 aa		35.94	■■■■□ 3.34
SMARCD1-204	ENST00000547637	DAPK1	P53355	1430 aa		35.92	■■■■□ 3.34
SMARCD1-204	ENST00000547637	ARHGAP31	Q2M1Z3	1444 aa		35.92	■■■■□ 3.34
SMARCD1-204	ENST00000547637	ANKRD30A	Q9BXX3	1397 aa		35.91	■■■■□ 3.34
SMARCD1-204	ENST00000547637	CROCC2	H7BZ55	1655 aa		35.91	■■■■□ 3.34
SMARCD1-204	ENST00000547637	VWDE	Q8N2E2	1590 aa		35.91	■■■■□ 3.34
SMARCD1-204	ENST00000547637	FGD6	Q6ZV73	1430 aa		35.9	■■■■□ 3.34
SMARCD1-204	ENST00000547637	EID1	Q9Y6B2	187 aa		35.89	■■■■□ 3.34
SMARCD1-204	ENST00000547637	PRDM15	P57071	1507 aa	Predicted RBP	35.88	■■■■□ 3.33
SMARCD1-204	ENST00000547637	STAG3	Q9UJ98	1225 aa		35.88	■■■■□ 3.33
SMARCD1-204	ENST00000547637	CHIC2	Q9UKJ5	165 aa		35.87	■■■■□ 3.33
SMARCD1-204	ENST00000547637	TXNDC2	Q86VQ3	553 aa		35.86	■■■■□ 3.33
SMARCD1-204	ENST00000547637	HSPA1L	P34931	641 aa		35.84	■■■■□ 3.33
SMARCD1-204	ENST00000547637	UBR1	Q8IWV7	1749 aa		35.83	■■■■□ 3.33
SMARCD1-204	ENST00000547637	SCAF11	Q99590	1463 aa	Known RBP	35.82	■■■■□ 3.32
SMARCD1-204	ENST00000547637	SLIT1	O75093	1534 aa		35.75	■■■■□ 3.31
SMARCD1-204	ENST00000547637	LTK	P29376	864 aa		35.75	■■■■□ 3.31
SMARCD1-204	ENST00000547637	FAM50A	Q14320	339 aa	Known RBP	35.74	■■■■□ 3.31
SMARCD1-204	ENST00000547637	ARHGAP23	Q9P227	1491 aa		35.73	■■■■□ 3.31
SMARCD1-204	ENST00000547637	LRRC7	Q96NW7	1537 aa		35.72	■■■■□ 3.31
SMARCD1-204	ENST00000547637	SYNM	O15061	1565 aa		35.72	■■■■□ 3.31
SMARCD1-204	ENST00000547637	LMTK2	Q8IWU2	1503 aa		35.69	■■■■□ 3.3
SMARCD1-204	ENST00000547637	TMEM2	Q9UHN6	1383 aa		35.69	■■■■□ 3.3
SMARCD1-204	ENST00000547637	IDI1	Q13907	227 aa		35.68	■■■■□ 3.3
SMARCD1-204	ENST00000547637	PIK3C2B	O00750	1634 aa		35.66	■■■■□ 3.3
SMARCD1-204	ENST00000547637	STRCP1	A6NGW2	1772 aa		35.66	■■■■□ 3.3
SMARCD1-204	ENST00000547637	SLC52A1	Q9NWF4	448 aa		35.64	■■■■□ 3.3
SMARCD1-204	ENST00000547637	ADGRL2	O95490	1459 aa		35.63	■■■■□ 3.29
SMARCD1-204	ENST00000547637	EFCAB6	Q5THR3	1501 aa		35.62	■■■■□ 3.29
SMARCD1-204	ENST00000547637	KDM5A	P29375	1690 aa	Known RBP	35.62	■■■■□ 3.29
SMARCD1-204	ENST00000547637	ANKRD50	Q9ULJ7	1429 aa		35.58	■■■■□ 3.29
SMARCD1-204	ENST00000547637	PHF23	Q9BUL5	403 aa	Predicted RBP	35.58	■■■■□ 3.29
SMARCD1-204	ENST00000547637	MED1	Q15648	1581 aa	Predicted RBP	35.57	■■■■□ 3.28
SMARCD1-204	ENST00000547637	ALK	Q9UM73	1620 aa		35.55	■■■■□ 3.28
SMARCD1-204	ENST00000547637	HDGF	P51858	240 aa	Known RBP	35.55	■■■■□ 3.28
SMARCD1-204	ENST00000547637	BCAN	Q96GW7	911 aa		35.55	■■■■□ 3.28
SMARCD1-204	ENST00000547637	NOS1	P29475	1434 aa		35.55	■■■■□ 3.28
SMARCD1-204	ENST00000547637	SENP3	Q9H4L4	574 aa	Predicted RBP	35.54	■■■■□ 3.28
SMARCD1-204	ENST00000547637	KCNA6	P17658	529 aa		35.53	■■■■□ 3.28
SMARCD1-204	ENST00000547637	RPRD2	Q5VT52	1461 aa	Known RBP	35.52	■■■■□ 3.28
SMARCD1-204	ENST00000547637	SLC26A8	Q96RN1	970 aa		35.49	■■■■□ 3.27
SMARCD1-204	ENST00000547637	ADGRB3	O60242	1522 aa		35.47	■■■■□ 3.27
SMARCD1-204	ENST00000547637	PROSER2	Q86WR7	435 aa	Predicted RBP	35.46	■■■■□ 3.27
SMARCD1-204	ENST00000547637	PPP1R15A	O75807	674 aa	Predicted RBP	35.43	■■■■□ 3.26
SMARCD1-204	ENST00000547637	TMEM94	Q12767	1356 aa		35.42	■■■■□ 3.26
SMARCD1-204	ENST00000547637	TET3	O43151	1660 aa		35.4	■■■■□ 3.26
SMARCD1-204	ENST00000547637	XIRP1	Q702N8	1843 aa	Known RBP	35.39	■■■■□ 3.26

Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms