RNA–Protein interactions for RNA: ENST00000547615.1

PTCH1-214, Transcript of patched 1, humanhuman

TSL 5

Gene PTCH1, Length 525 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-214ENST00000547615 RSPH4AQ5TD94 716 aa13.35□□□□□ -0.27
PTCH1-214ENST00000547615 MED1Q15648 1581 aaPredicted RBP13.35□□□□□ -0.27
PTCH1-214ENST00000547615 DEPDC5O75140 1603 aa13.35□□□□□ -0.27
PTCH1-214ENST00000547615 EHMT2Q96KQ7 1210 aa13.34□□□□□ -0.27
PTCH1-214ENST00000547615 DHX29Q7Z478 1369 aaKnown RBP13.33□□□□□ -0.27
PTCH1-214ENST00000547615 TNRQ92752 1358 aa13.33□□□□□ -0.27
PTCH1-214ENST00000547615 SHANK2Q9UPX8 1470 aa13.33□□□□□ -0.28
PTCH1-214ENST00000547615 SYNMO15061 1565 aa13.32□□□□□ -0.28
PTCH1-214ENST00000547615 TIAM1Q13009 1591 aa13.32□□□□□ -0.28
PTCH1-214ENST00000547615 ZC3H13Q5T200 1668 aaKnown RBP13.32□□□□□ -0.28
PTCH1-214ENST00000547615 THEMISQ8N1K5 641 aaPredicted RBP13.32□□□□□ -0.28
PTCH1-214ENST00000547615 NEURL4Q96JN8 1562 aa13.32□□□□□ -0.28
PTCH1-214ENST00000547615 CCDC141Q6ZP82 1450 aa13.31□□□□□ -0.28
PTCH1-214ENST00000547615 ANKLE2Q86XL3 938 aa13.31□□□□□ -0.28
PTCH1-214ENST00000547615 SCAF1Q9H7N4 1312 aaKnown RBP13.31□□□□□ -0.28
PTCH1-214ENST00000547615 CEP162Q5TB80 1403 aa13.3□□□□□ -0.28
PTCH1-214ENST00000547615 MED14O60244 1454 aa13.3□□□□□ -0.28
PTCH1-214ENST00000547615 MBD5Q9P267 1494 aa13.3□□□□□ -0.28
PTCH1-214ENST00000547615 UGGT1Q9NYU2 1555 aa13.3□□□□□ -0.28
PTCH1-214ENST00000547615 RNF17Q9BXT8 1623 aaKnown RBP13.29□□□□□ -0.28
PTCH1-214ENST00000547615 PHF23Q9BUL5 403 aaPredicted RBP13.29□□□□□ -0.28
PTCH1-214ENST00000547615 IQGAP1P46940 1657 aa13.28□□□□□ -0.28
PTCH1-214ENST00000547615 WASHC2CQ9Y4E1 1318 aa13.27□□□□□ -0.29
PTCH1-214ENST00000547615 NPHP4O75161 1426 aaPredicted RBP13.27□□□□□ -0.29
PTCH1-214ENST00000547615 ARHGEF5Q12774 1597 aa13.27□□□□□ -0.29
PTCH1-214ENST00000547615 HSPA1LP34931 641 aa13.26□□□□□ -0.29
PTCH1-214ENST00000547615 VWDEQ8N2E2 1590 aa13.26□□□□□ -0.29
PTCH1-214ENST00000547615 MIA2Q96PC5 1412 aa13.26□□□□□ -0.29
PTCH1-214ENST00000547615 EIF2AK4Q9P2K8 1649 aaKnown RBP13.26□□□□□ -0.29
PTCH1-214ENST00000547615 KIF3BO15066 747 aa13.25□□□□□ -0.29
PTCH1-214ENST00000547615 PIP4K2BP78356 416 aa13.25□□□□□ -0.29
PTCH1-214ENST00000547615 CAMSAP2Q08AD1 1489 aa13.24□□□□□ -0.29
PTCH1-214ENST00000547615 TSPY4P0CV99 314 aa13.23□□□□□ -0.29
PTCH1-214ENST00000547615 TSPY10P0CW01 314 aa13.23□□□□□ -0.29
PTCH1-214ENST00000547615 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.22□□□□□ -0.29
PTCH1-214ENST00000547615 MAST1Q9Y2H9 1570 aa13.2□□□□□ -0.3
PTCH1-214ENST00000547615 NCOA2Q15596 1464 aa13.2□□□□□ -0.3
PTCH1-214ENST00000547615 ABCC3O15438 1527 aa13.18□□□□□ -0.3
PTCH1-214ENST00000547615 LRRC7Q96NW7 1537 aa13.18□□□□□ -0.3
PTCH1-214ENST00000547615 ZNF644Q9H582 1327 aaPredicted RBP13.17□□□□□ -0.3
PTCH1-214ENST00000547615 FBXO31Q5XUX0 539 aaPredicted RBP13.17□□□□□ -0.3
PTCH1-214ENST00000547615 ERVK-7P63135 1459 aa13.16□□□□□ -0.3
PTCH1-214ENST00000547615 SCAF11Q99590 1463 aaKnown RBP13.16□□□□□ -0.3
PTCH1-214ENST00000547615 ALKQ9UM73 1620 aa13.16□□□□□ -0.3
PTCH1-214ENST00000547615 UBR1Q8IWV7 1749 aa13.16□□□□□ -0.3
PTCH1-214ENST00000547615 KDM5AP29375 1690 aaKnown RBP13.15□□□□□ -0.3
PTCH1-214ENST00000547615 SLIT1O75093 1534 aa13.14□□□□□ -0.31
PTCH1-214ENST00000547615 DUOX2Q9NRD8 1548 aa13.13□□□□□ -0.31
PTCH1-214ENST00000547615 LRRC9Q6ZRR7 1453 aa13.13□□□□□ -0.31
PTCH1-214ENST00000547615 ARHGAP31Q2M1Z3 1444 aa13.13□□□□□ -0.31
PTCH1-214ENST00000547615 STRCP1A6NGW2 1772 aa13.12□□□□□ -0.31
PTCH1-214ENST00000547615 ARHGAP23Q9P227 1491 aa13.12□□□□□ -0.31
PTCH1-214ENST00000547615 EID1Q9Y6B2 187 aa13.12□□□□□ -0.31
PTCH1-214ENST00000547615 PRDM15P57071 1507 aaPredicted RBP13.12□□□□□ -0.31
PTCH1-214ENST00000547615 CEP152O94986 1710 aa13.1□□□□□ -0.31
PTCH1-214ENST00000547615 FAM135BQ49AJ0 1406 aa13.1□□□□□ -0.31
PTCH1-214ENST00000547615 ERBINQ96RT1 1412 aa13.1□□□□□ -0.31
PTCH1-214ENST00000547615 MROH1Q8NDA8 1641 aa13.1□□□□□ -0.31
PTCH1-214ENST00000547615 MYOM3Q5VTT5 1437 aa13.09□□□□□ -0.31
PTCH1-214ENST00000547615 MAP3K1Q13233 1512 aa13.08□□□□□ -0.31
PTCH1-214ENST00000547615 KANK1Q14678 1352 aa13.07□□□□□ -0.32
PTCH1-214ENST00000547615 NKTRP30414 1462 aaKnown RBP13.06□□□□□ -0.32
PTCH1-214ENST00000547615 EFCAB6Q5THR3 1501 aa13.05□□□□□ -0.32
PTCH1-214ENST00000547615 TXNDC2Q86VQ3 553 aa13.05□□□□□ -0.32
PTCH1-214ENST00000547615 CROCC2H7BZ55 1655 aa13.05□□□□□ -0.32
PTCH1-214ENST00000547615 XIRP1Q702N8 1843 aaKnown RBP13.04□□□□□ -0.32
PTCH1-214ENST00000547615 STAG3Q9UJ98 1225 aa13.04□□□□□ -0.32
PTCH1-214ENST00000547615 TMEM2Q9UHN6 1383 aa13.04□□□□□ -0.32
PTCH1-214ENST00000547615 VPS8Q8N3P4 1428 aa13.04□□□□□ -0.32
PTCH1-214ENST00000547615 PIK3C2BO00750 1634 aa13.03□□□□□ -0.32
PTCH1-214ENST00000547615 KIF15Q9NS87 1388 aa13.02□□□□□ -0.33
PTCH1-214ENST00000547615 LMTK2Q8IWU2 1503 aa13.02□□□□□ -0.33
PTCH1-214ENST00000547615 NWD1Q149M9 1564 aa13.02□□□□□ -0.33
PTCH1-214ENST00000547615 ROBO1Q9Y6N7 1651 aa13.02□□□□□ -0.33
PTCH1-214ENST00000547615 MSH6P52701 1360 aa13□□□□□ -0.33
PTCH1-214ENST00000547615 KCNA6P17658 529 aa13□□□□□ -0.33
PTCH1-214ENST00000547615 CFAP65Q6ZU64 1925 aaKnown RBP13□□□□□ -0.33
PTCH1-214ENST00000547615 ADGRB3O60242 1522 aa12.99□□□□□ -0.33
PTCH1-214ENST00000547615 TMEM94Q12767 1356 aa12.99□□□□□ -0.33
PTCH1-214ENST00000547615 LTKP29376 864 aa12.98□□□□□ -0.33
PTCH1-214ENST00000547615 HDGFP51858 240 aaKnown RBP12.98□□□□□ -0.33
PTCH1-214ENST00000547615 RPRD2Q5VT52 1461 aaKnown RBP12.97□□□□□ -0.33
PTCH1-214ENST00000547615 NCOA3Q9Y6Q9 1424 aa12.97□□□□□ -0.33
PTCH1-214ENST00000547615 JCADQ9P266 1359 aa12.97□□□□□ -0.33
PTCH1-214ENST00000547615 TET3O43151 1660 aa12.96□□□□□ -0.33
PTCH1-214ENST00000547615 SENP3Q9H4L4 574 aaPredicted RBP12.96□□□□□ -0.33
PTCH1-214ENST00000547615 SLC52A1Q9NWF4 448 aa12.96□□□□□ -0.33
PTCH1-214ENST00000547615 RGS17Q9UGC6 210 aaPredicted RBP12.96□□□□□ -0.33
PTCH1-214ENST00000547615 PHLPP1O60346 1717 aa12.96□□□□□ -0.34
PTCH1-214ENST00000547615 FGD6Q6ZV73 1430 aa12.96□□□□□ -0.34
PTCH1-214ENST00000547615 ANKRD30AQ9BXX3 1397 aa12.95□□□□□ -0.34
PTCH1-214ENST00000547615 PTPN23Q9H3S7 1636 aa12.95□□□□□ -0.34
PTCH1-214ENST00000547615 PROSER2Q86WR7 435 aaPredicted RBP12.95□□□□□ -0.34
PTCH1-214ENST00000547615 DAPK1P53355 1430 aa12.94□□□□□ -0.34
PTCH1-214ENST00000547615 SPATA31A6Q5VVP1 1343 aa12.93□□□□□ -0.34
PTCH1-214ENST00000547615 NOS1P29475 1434 aa12.93□□□□□ -0.34
PTCH1-214ENST00000547615 DIP2AQ14689 1571 aa12.93□□□□□ -0.34
PTCH1-214ENST00000547615 ABCC5O15440 1437 aa12.92□□□□□ -0.34
PTCH1-214ENST00000547615 APLP2Q06481 763 aa12.92□□□□□ -0.34
PTCH1-214ENST00000547615 ZNF772Q68DY9 489 aaPredicted RBP12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms