RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 CAMSAP1Q5T5Y3 1602 aa20.96■□□□□ 0.95
CPSF6-204ENST00000547486 MAST1Q9Y2H9 1570 aa20.92■□□□□ 0.94
CPSF6-204ENST00000547486 MYO3AQ8NEV4 1616 aa20.92■□□□□ 0.94
CPSF6-204ENST00000547486 KDM5DQ9BY66 1539 aa20.91■□□□□ 0.94
CPSF6-204ENST00000547486 CEP170BQ9Y4F5 1589 aaPredicted RBP20.91■□□□□ 0.94
CPSF6-204ENST00000547486 TNRQ92752 1358 aa20.9■□□□□ 0.94
CPSF6-204ENST00000547486 PKD2Q13563 968 aa20.9■□□□□ 0.94
CPSF6-204ENST00000547486 PZPP20742 1482 aa20.89■□□□□ 0.94
CPSF6-204ENST00000547486 ABCC5O15440 1437 aa20.89■□□□□ 0.94
CPSF6-204ENST00000547486 A2ML1A8K2U0 1454 aa20.88■□□□□ 0.93
CPSF6-204ENST00000547486 PLA2R1Q13018 1463 aa20.88■□□□□ 0.93
CPSF6-204ENST00000547486 ZNF142P52746 1687 aaPredicted RBP20.87■□□□□ 0.93
CPSF6-204ENST00000547486 LTBP4Q8N2S1 1624 aa20.87■□□□□ 0.93
CPSF6-204ENST00000547486 RRP7BPQ9NSQ0 103 aa20.87■□□□□ 0.93
CPSF6-204ENST00000547486 TCOF1Q13428 1488 aaKnown RBP20.87■□□□□ 0.93
CPSF6-204ENST00000547486 FAM135AQ9P2D6 1515 aa20.86■□□□□ 0.93
CPSF6-204ENST00000547486 ZNF335Q9H4Z2 1342 aaPredicted RBP20.85■□□□□ 0.93
CPSF6-204ENST00000547486 FGD6Q6ZV73 1430 aa20.85■□□□□ 0.93
CPSF6-204ENST00000547486 DNMT1P26358 1616 aaKnown RBP20.84■□□□□ 0.93
CPSF6-204ENST00000547486 PTPN23Q9H3S7 1636 aa20.84■□□□□ 0.93
CPSF6-204ENST00000547486 KIF15Q9NS87 1388 aa20.83■□□□□ 0.92
CPSF6-204ENST00000547486 ABCC3O15438 1527 aa20.83■□□□□ 0.92
CPSF6-204ENST00000547486 RNF17Q9BXT8 1623 aaKnown RBP20.82■□□□□ 0.92
CPSF6-204ENST00000547486 DAPK1P53355 1430 aa20.82■□□□□ 0.92
CPSF6-204ENST00000547486 CHIC2Q9UKJ5 165 aa20.81■□□□□ 0.92
CPSF6-204ENST00000547486 DUOX2Q9NRD8 1548 aa20.81■□□□□ 0.92
CPSF6-204ENST00000547486 MROH1Q8NDA8 1641 aa20.8■□□□□ 0.92
CPSF6-204ENST00000547486 SHANK2Q9UPX8 1470 aa20.8■□□□□ 0.92
CPSF6-204ENST00000547486 THEMISQ8N1K5 641 aaPredicted RBP20.79■□□□□ 0.92
CPSF6-204ENST00000547486 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.79■□□□□ 0.92
CPSF6-204ENST00000547486 EIF2AK4Q9P2K8 1649 aaKnown RBP20.78■□□□□ 0.92
CPSF6-204ENST00000547486 NLRP1Q9C000 1473 aa20.77■□□□□ 0.92
CPSF6-204ENST00000547486 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.77■□□□□ 0.925e-8■□□□□ 10.6
CPSF6-204ENST00000547486 ANKLE2Q86XL3 938 aa20.76■□□□□ 0.91
CPSF6-204ENST00000547486 ERBINQ96RT1 1412 aa20.75■□□□□ 0.91
CPSF6-204ENST00000547486 ERVK-7P63135 1459 aa20.74■□□□□ 0.91
CPSF6-204ENST00000547486 SPATA31D1Q6ZQQ2 1576 aa20.73■□□□□ 0.91
CPSF6-204ENST00000547486 FAM50AQ14320 339 aaKnown RBP20.73■□□□□ 0.91
CPSF6-204ENST00000547486 CROCC2H7BZ55 1655 aa20.73■□□□□ 0.91
CPSF6-204ENST00000547486 ANKRD30AQ9BXX3 1397 aa20.72■□□□□ 0.91
CPSF6-204ENST00000547486 UGGT1Q9NYU2 1555 aa20.72■□□□□ 0.91
CPSF6-204ENST00000547486 IQSEC2Q5JU85 1478 aa20.72■□□□□ 0.91
CPSF6-204ENST00000547486 ZC3H13Q5T200 1668 aaKnown RBP20.71■□□□□ 0.91
CPSF6-204ENST00000547486 NEURL4Q96JN8 1562 aa20.71■□□□□ 0.91
CPSF6-204ENST00000547486 PRDM15P57071 1507 aaPredicted RBP20.69■□□□□ 0.9
CPSF6-204ENST00000547486 CEP152O94986 1710 aa20.69■□□□□ 0.9
CPSF6-204ENST00000547486 ARHGAP31Q2M1Z3 1444 aa20.69■□□□□ 0.9
CPSF6-204ENST00000547486 UBAP1LF5GYI3 381 aa20.66■□□□□ 0.9
CPSF6-204ENST00000547486 NPHP4O75161 1426 aaPredicted RBP20.66■□□□□ 0.9
CPSF6-204ENST00000547486 MED14O60244 1454 aa20.65■□□□□ 0.9
CPSF6-204ENST00000547486 KANK1Q14678 1352 aa20.65■□□□□ 0.9
CPSF6-204ENST00000547486 ADGRL2O95490 1459 aa20.64■□□□□ 0.89
CPSF6-204ENST00000547486 PPARGC1BQ86YN6 1023 aaKnown RBP20.64■□□□□ 0.89
CPSF6-204ENST00000547486 DEPDC5O75140 1603 aa20.64■□□□□ 0.89
CPSF6-204ENST00000547486 POLR1AO95602 1720 aaPredicted RBP20.63■□□□□ 0.89
CPSF6-204ENST00000547486 CFAP65Q6ZU64 1925 aaKnown RBP20.63■□□□□ 0.89
CPSF6-204ENST00000547486 LTKP29376 864 aa20.62■□□□□ 0.89
CPSF6-204ENST00000547486 VWDEQ8N2E2 1590 aa20.6■□□□□ 0.89
CPSF6-204ENST00000547486 IDI1Q13907 227 aa20.6■□□□□ 0.89
CPSF6-204ENST00000547486 LMTK2Q8IWU2 1503 aa20.59■□□□□ 0.89
CPSF6-204ENST00000547486 TXNDC2Q86VQ3 553 aa20.59■□□□□ 0.89
CPSF6-204ENST00000547486 ANKRD50Q9ULJ7 1429 aa20.59■□□□□ 0.89
CPSF6-204ENST00000547486 UBR1Q8IWV7 1749 aa20.57■□□□□ 0.88
CPSF6-204ENST00000547486 CPS1P31327 1500 aa20.57■□□□□ 0.88
CPSF6-204ENST00000547486 ARHGAP23Q9P227 1491 aa20.56■□□□□ 0.88
CPSF6-204ENST00000547486 SCAF11Q99590 1463 aaKnown RBP20.55■□□□□ 0.88
CPSF6-204ENST00000547486 STAG3Q9UJ98 1225 aa20.54■□□□□ 0.88
CPSF6-204ENST00000547486 IQGAP1P46940 1657 aa20.54■□□□□ 0.88
CPSF6-204ENST00000547486 NOS1P29475 1434 aa20.53■□□□□ 0.88
CPSF6-204ENST00000547486 SLIT1O75093 1534 aa20.53■□□□□ 0.88
CPSF6-204ENST00000547486 TMEM2Q9UHN6 1383 aa20.53■□□□□ 0.88
CPSF6-204ENST00000547486 ITGAEP38570 1179 aa20.52■□□□□ 0.88
CPSF6-204ENST00000547486 PIP4K2BP78356 416 aa20.52■□□□□ 0.88
CPSF6-204ENST00000547486 EID1Q9Y6B2 187 aa20.52■□□□□ 0.88
CPSF6-204ENST00000547486 TOM1O60784 492 aa20.51■□□□□ 0.87
CPSF6-204ENST00000547486 PIK3C2BO00750 1634 aa20.51■□□□□ 0.87
CPSF6-204ENST00000547486 DISP3Q9P2K9 1392 aa20.5■□□□□ 0.87
CPSF6-204ENST00000547486 EFCAB6Q5THR3 1501 aa20.5■□□□□ 0.87
CPSF6-204ENST00000547486 SYNMO15061 1565 aa20.5■□□□□ 0.87
CPSF6-204ENST00000547486 ROCK1Q13464 1354 aa20.49■□□□□ 0.87
CPSF6-204ENST00000547486 SLC52A1Q9NWF4 448 aa20.49■□□□□ 0.87
CPSF6-204ENST00000547486 SCAF1Q9H7N4 1312 aaKnown RBP20.49■□□□□ 0.87
CPSF6-204ENST00000547486 LRRC7Q96NW7 1537 aa20.48■□□□□ 0.87
CPSF6-204ENST00000547486 STRCP1A6NGW2 1772 aa20.46■□□□□ 0.87
CPSF6-204ENST00000547486 HSPA1LP34931 641 aa20.46■□□□□ 0.87
CPSF6-204ENST00000547486 ILDR2Q71H61 639 aa20.46■□□□□ 0.87
CPSF6-204ENST00000547486 RPRD2Q5VT52 1461 aaKnown RBP20.43■□□□□ 0.86
CPSF6-204ENST00000547486 ALKQ9UM73 1620 aa20.43■□□□□ 0.86
CPSF6-204ENST00000547486 SLC26A8Q96RN1 970 aa20.43■□□□□ 0.86
CPSF6-204ENST00000547486 UNC13BO14795 1591 aa20.4■□□□□ 0.86
CPSF6-204ENST00000547486 NUP155O75694 1391 aa20.4■□□□□ 0.86
CPSF6-204ENST00000547486 KDM5AP29375 1690 aaKnown RBP20.4■□□□□ 0.86
CPSF6-204ENST00000547486 SENP3Q9H4L4 574 aaPredicted RBP20.4■□□□□ 0.86
CPSF6-204ENST00000547486 ADGRB3O60242 1522 aa20.39■□□□□ 0.85
CPSF6-204ENST00000547486 TET3O43151 1660 aa20.38■□□□□ 0.85
CPSF6-204ENST00000547486 KCNA6P17658 529 aa20.37■□□□□ 0.85
CPSF6-204ENST00000547486 CHGAP10645 457 aaKnown RBP20.35■□□□□ 0.85
CPSF6-204ENST00000547486 RBM33Q96EV2 1170 aaKnown RBP20.35■□□□□ 0.85
CPSF6-204ENST00000547486 BCANQ96GW7 911 aa20.35■□□□□ 0.85
CPSF6-204ENST00000547486 ZFYVE9O95405 1425 aa20.35■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms