RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 DRC7Q8IY82 874 aa16.05■□□□□ 0.16
PTCH1-212ENST00000546744 GZF1Q9H116 711 aaPredicted RBP16.05■□□□□ 0.16
PTCH1-212ENST00000546744 FAM43AQ8N2R8 423 aa16.05■□□□□ 0.16
PTCH1-212ENST00000546744 CCDC18Q5T9S5 1454 aa16.05■□□□□ 0.16
PTCH1-212ENST00000546744 TPM2P07951 284 aa16.04■□□□□ 0.16
PTCH1-212ENST00000546744 AAMPQ13685 434 aa16.04■□□□□ 0.16
PTCH1-212ENST00000546744 GOLGA2Q08379 1002 aa16.03■□□□□ 0.16
PTCH1-212ENST00000546744 WDR97A6NE52 1622 aa16.03■□□□□ 0.16
PTCH1-212ENST00000546744 PRKCSHP14314 528 aaPredicted RBP16.03■□□□□ 0.16
PTCH1-212ENST00000546744 PKNOX2Q96KN3 472 aa16.01■□□□□ 0.15
PTCH1-212ENST00000546744 KIF15Q9NS87 1388 aa16.01■□□□□ 0.15
PTCH1-212ENST00000546744 PRG4Q92954 1404 aaPredicted RBP16.01■□□□□ 0.15
PTCH1-212ENST00000546744 CGNL1Q0VF96 1302 aa16.01■□□□□ 0.15
PTCH1-212ENST00000546744 THOC2Q8NI27 1593 aaKnown RBP16■□□□□ 0.15
PTCH1-212ENST00000546744 RRP1P56182 461 aaKnown RBP16■□□□□ 0.15
PTCH1-212ENST00000546744 MRE11P49959 708 aa15.99■□□□□ 0.15
PTCH1-212ENST00000546744 CHMP5Q9NZZ3 219 aa15.99■□□□□ 0.15
PTCH1-212ENST00000546744 CC2D1BQ5T0F9 858 aaKnown RBP15.99■□□□□ 0.15
PTCH1-212ENST00000546744 PRKRIP1Q9H875 184 aaPredicted RBP15.99■□□□□ 0.15
PTCH1-212ENST00000546744 ESF1Q9H501 851 aaKnown RBP15.98■□□□□ 0.15
PTCH1-212ENST00000546744 RRBP1Q9P2E9 1410 aaKnown RBP15.98■□□□□ 0.15
PTCH1-212ENST00000546744 MAP3K1Q13233 1512 aa15.98■□□□□ 0.15
PTCH1-212ENST00000546744 RGL3Q3MIN7 710 aa15.98■□□□□ 0.15
PTCH1-212ENST00000546744 MYBBP1AQ9BQG0 1328 aaKnown RBP15.97■□□□□ 0.15
PTCH1-212ENST00000546744 TPM4P67936 248 aa15.97■□□□□ 0.15
PTCH1-212ENST00000546744 HECW1Q76N89 1606 aa15.97■□□□□ 0.15
PTCH1-212ENST00000546744 GOLGA6L1Q8N7Z2 621 aa15.96■□□□□ 0.15
PTCH1-212ENST00000546744 NCOA2Q15596 1464 aa15.96■□□□□ 0.15
PTCH1-212ENST00000546744 ST18O60284 1047 aa15.96■□□□□ 0.15
PTCH1-212ENST00000546744 NEUROD2Q15784 382 aa15.96■□□□□ 0.15
PTCH1-212ENST00000546744 FGD6Q6ZV73 1430 aa15.96■□□□□ 0.15
PTCH1-212ENST00000546744 EIF3AQ14152 1382 aaKnown RBP15.95■□□□□ 0.14
PTCH1-212ENST00000546744 CHMP4AQ9BY43 222 aa15.95■□□□□ 0.14
PTCH1-212ENST00000546744 RRP9O43818 475 aaKnown RBP15.95■□□□□ 0.14
PTCH1-212ENST00000546744 KCNJ4P48050 445 aa15.95■□□□□ 0.14
PTCH1-212ENST00000546744 MYOM3Q5VTT5 1437 aa15.95■□□□□ 0.14
PTCH1-212ENST00000546744 FGD1P98174 961 aa15.94■□□□□ 0.14
PTCH1-212ENST00000546744 OSCARQ8IYS5 282 aa15.94■□□□□ 0.14
PTCH1-212ENST00000546744 NFKBIBQ15653 356 aa15.94■□□□□ 0.14
PTCH1-212ENST00000546744 SPRYD3Q8NCJ5 442 aa15.94■□□□□ 0.14
PTCH1-212ENST00000546744 EPRSP07814 1512 aaKnown RBP15.93■□□□□ 0.14
PTCH1-212ENST00000546744 ATP6V1DQ9Y5K8 247 aa15.93■□□□□ 0.14
PTCH1-212ENST00000546744 DDX49Q9Y6V7 483 aaKnown RBP15.93■□□□□ 0.14
PTCH1-212ENST00000546744 EHBP1L1Q8N3D4 1523 aa15.92■□□□□ 0.14
PTCH1-212ENST00000546744 CENPJQ9HC77 1338 aaPredicted RBP15.92■□□□□ 0.14
PTCH1-212ENST00000546744 CDK13Q14004 1512 aaKnown RBP15.92■□□□□ 0.14
PTCH1-212ENST00000546744 KIAA1211Q6ZU35 1233 aa15.91■□□□□ 0.14
PTCH1-212ENST00000546744 DCAF11Q8TEB1 546 aa15.91■□□□□ 0.14
PTCH1-212ENST00000546744 MFAP1P55081 439 aaKnown RBP15.91■□□□□ 0.14
PTCH1-212ENST00000546744 KIF16BQ96L93 1317 aa15.91■□□□□ 0.14
PTCH1-212ENST00000546744 GPS2Q13227 327 aa15.91■□□□□ 0.14
PTCH1-212ENST00000546744 UGGT2Q9NYU1 1516 aa15.91■□□□□ 0.14
PTCH1-212ENST00000546744 CCDC34Q96HJ3 373 aa15.9■□□□□ 0.14
PTCH1-212ENST00000546744 MPHOSPH9Q99550 1183 aa15.9■□□□□ 0.14
PTCH1-212ENST00000546744 MORC1Q86VD1 984 aa15.88■□□□□ 0.13
PTCH1-212ENST00000546744 PLB1Q6P1J6 1458 aa15.88■□□□□ 0.13
PTCH1-212ENST00000546744 HMGN5P82970 282 aaKnown RBP15.88■□□□□ 0.13
PTCH1-212ENST00000546744 SETQ01105 290 aaPredicted RBP15.88■□□□□ 0.13
PTCH1-212ENST00000546744 HMMRO75330 724 aa15.87■□□□□ 0.13
PTCH1-212ENST00000546744 CHMP4CQ96CF2 233 aa15.87■□□□□ 0.13
PTCH1-212ENST00000546744 DIAPH3Q9NSV4 1193 aa15.87■□□□□ 0.13
PTCH1-212ENST00000546744 TEX35Q5T0J7 233 aa15.87■□□□□ 0.13
PTCH1-212ENST00000546744 SENP3-EIF4A1A0A087X0R7 540 aa15.87■□□□□ 0.13
PTCH1-212ENST00000546744 HDAC5Q9UQL6 1122 aa15.86■□□□□ 0.13
PTCH1-212ENST00000546744 SAMD9Q5K651 1589 aa15.86■□□□□ 0.13
PTCH1-212ENST00000546744 CCDC66A2RUB6 948 aa15.86■□□□□ 0.13
PTCH1-212ENST00000546744 NUP160Q12769 1436 aa15.86■□□□□ 0.13
PTCH1-212ENST00000546744 TPM3P06753 285 aa15.85■□□□□ 0.13
PTCH1-212ENST00000546744 NUCB2P80303 420 aa15.85■□□□□ 0.13
PTCH1-212ENST00000546744 SUPT6HQ7KZ85 1726 aaKnown RBP15.85■□□□□ 0.13
PTCH1-212ENST00000546744 ZNF771Q7L3S4 317 aaPredicted RBP15.85■□□□□ 0.13
PTCH1-212ENST00000546744 E9PSI1 815 aa15.85■□□□□ 0.13
PTCH1-212ENST00000546744 KIF3AQ9Y496 699 aa15.85■□□□□ 0.13
PTCH1-212ENST00000546744 KIAA0556O60303 1618 aa15.85■□□□□ 0.13
PTCH1-212ENST00000546744 A0A0U1RQG5 324 aaPredicted RBP15.85■□□□□ 0.13
PTCH1-212ENST00000546744 EXOC6Q8TAG9 804 aa15.84■□□□□ 0.13
PTCH1-212ENST00000546744 L3MBTL2Q969R5 705 aa15.84■□□□□ 0.13
PTCH1-212ENST00000546744 FAM13BQ9NYF5 915 aa15.84■□□□□ 0.13
PTCH1-212ENST00000546744 U2SURPO15042 1029 aaKnown RBP15.83■□□□□ 0.13
PTCH1-212ENST00000546744 ITPRIPQ8IWB1 547 aa15.83■□□□□ 0.13
PTCH1-212ENST00000546744 OS9Q13438 667 aaPredicted RBP15.83■□□□□ 0.12
PTCH1-212ENST00000546744 TROQ12816 1431 aaPredicted RBP15.83■□□□□ 0.12
PTCH1-212ENST00000546744 ZNF644Q9H582 1327 aaPredicted RBP15.82■□□□□ 0.12
PTCH1-212ENST00000546744 ANO8Q9HCE9 1232 aaPredicted RBP15.82■□□□□ 0.12
PTCH1-212ENST00000546744 DISP1Q96F81 1524 aa15.81■□□□□ 0.12
PTCH1-212ENST00000546744 CEP170Q5SW79 1584 aa15.81■□□□□ 0.12
PTCH1-212ENST00000546744 CCDC39Q9UFE4 941 aa15.81■□□□□ 0.12
PTCH1-212ENST00000546744 CNTLNQ9NXG0 1405 aa15.8■□□□□ 0.12
PTCH1-212ENST00000546744 PKD2Q13563 968 aa15.8■□□□□ 0.12
PTCH1-212ENST00000546744 CFAP43Q8NDM7 1665 aa15.8■□□□□ 0.12
PTCH1-212ENST00000546744 HNRNPMP52272 730 aaKnown RBP eCLIP15.8■□□□□ 0.12
PTCH1-212ENST00000546744 ANKRD30AQ9BXX3 1397 aa15.8■□□□□ 0.12
PTCH1-212ENST00000546744 TPRNQ4KMQ1 711 aa15.8■□□□□ 0.12
PTCH1-212ENST00000546744 TAF3Q5VWG9 929 aa15.8■□□□□ 0.12
PTCH1-212ENST00000546744 ARID3AQ99856 593 aa15.79■□□□□ 0.12
PTCH1-212ENST00000546744 KANK1Q14678 1352 aa15.79■□□□□ 0.12
PTCH1-212ENST00000546744 NOM1Q5C9Z4 860 aaKnown RBP15.79■□□□□ 0.12
PTCH1-212ENST00000546744 EFCAB2Q5VUJ9 269 aa15.79■□□□□ 0.12
PTCH1-212ENST00000546744 CCDC173Q0VFZ6 552 aa15.79■□□□□ 0.12
PTCH1-212ENST00000546744 UACAQ9BZF9 1416 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms