RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 NUP155O75694 1391 aa19.51■□□□□ 0.71
HOXC11-202ENST00000546378 ABCC10Q5T3U5 1492 aa19.49■□□□□ 0.71
HOXC11-202ENST00000546378 NCOA1Q15788 1441 aa19.49■□□□□ 0.71
HOXC11-202ENST00000546378 SHROOM2Q13796 1616 aa19.48■□□□□ 0.71
HOXC11-202ENST00000546378 C9orf84Q5VXU9 1444 aa19.48■□□□□ 0.71
HOXC11-202ENST00000546378 KIF15Q9NS87 1388 aa19.48■□□□□ 0.71
HOXC11-202ENST00000546378 BRPF3Q9ULD4 1205 aa19.48■□□□□ 0.71
HOXC11-202ENST00000546378 RCAN3Q9UKA8 241 aa19.47■□□□□ 0.71
HOXC11-202ENST00000546378 KDM6BO15054 1643 aa19.47■□□□□ 0.71
HOXC11-202ENST00000546378 PDE4AP27815 886 aa19.46■□□□□ 0.71
HOXC11-202ENST00000546378 ANKRD50Q9ULJ7 1429 aa19.46■□□□□ 0.71
HOXC11-202ENST00000546378 SPRYD3Q8NCJ5 442 aa19.43■□□□□ 0.7
HOXC11-202ENST00000546378 SPAG9O60271 1321 aaKnown RBP19.43■□□□□ 0.7
HOXC11-202ENST00000546378 NEUROD2Q15784 382 aa19.42■□□□□ 0.7
HOXC11-202ENST00000546378 ROCK1Q13464 1354 aa19.42■□□□□ 0.7
HOXC11-202ENST00000546378 ASXL2Q76L83 1435 aa19.41■□□□□ 0.7
HOXC11-202ENST00000546378 CRBNQ96SW2 442 aa19.41■□□□□ 0.7
HOXC11-202ENST00000546378 USP47Q96K76 1375 aa19.4■□□□□ 0.7
HOXC11-202ENST00000546378 PRKCSHP14314 528 aaPredicted RBP19.4■□□□□ 0.7
HOXC11-202ENST00000546378 RSPH4AQ5TD94 716 aa19.4■□□□□ 0.7
HOXC11-202ENST00000546378 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.4■□□□□ 0.7
HOXC11-202ENST00000546378 C20orf194Q5TEA3 1177 aa19.4■□□□□ 0.7
HOXC11-202ENST00000546378 RRP1P56182 461 aaKnown RBP19.39■□□□□ 0.69
HOXC11-202ENST00000546378 TNNT2P45379 298 aaPredicted RBP19.38■□□□□ 0.69
HOXC11-202ENST00000546378 CCDC146Q8IYE0 955 aa19.38■□□□□ 0.69
HOXC11-202ENST00000546378 TTC37Q6PGP7 1564 aa19.38■□□□□ 0.69
HOXC11-202ENST00000546378 KDM5BQ9UGL1 1544 aa19.38■□□□□ 0.69
HOXC11-202ENST00000546378 SYCP2Q9BX26 1530 aa19.37■□□□□ 0.69
HOXC11-202ENST00000546378 DNMT1P26358 1616 aaKnown RBP19.37■□□□□ 0.69
HOXC11-202ENST00000546378 PNISRQ8TF01 805 aaKnown RBP19.37■□□□□ 0.69
HOXC11-202ENST00000546378 ITSN2Q9NZM3 1697 aa19.36■□□□□ 0.69
HOXC11-202ENST00000546378 ZCCHC11Q5TAX3 1644 aaKnown RBP19.36■□□□□ 0.69
HOXC11-202ENST00000546378 PLCH2O75038 1416 aa19.36■□□□□ 0.69
HOXC11-202ENST00000546378 CDC42BPAQ5VT25 1732 aa19.35■□□□□ 0.69
HOXC11-202ENST00000546378 KIF3BO15066 747 aa19.35■□□□□ 0.69
HOXC11-202ENST00000546378 CCDC141Q6ZP82 1450 aa19.34■□□□□ 0.69
HOXC11-202ENST00000546378 WDR7Q9Y4E6 1490 aa19.34■□□□□ 0.69
HOXC11-202ENST00000546378 TRAPPC8Q9Y2L5 1435 aa19.34■□□□□ 0.69
HOXC11-202ENST00000546378 RAPGEF3O95398 923 aa19.34■□□□□ 0.69
HOXC11-202ENST00000546378 MBD5Q9P267 1494 aa19.34■□□□□ 0.69
HOXC11-202ENST00000546378 FAM69CQ0P6D2 419 aa19.33■□□□□ 0.69
HOXC11-202ENST00000546378 NBPF1Q3BBV0 1214 aa19.33■□□□□ 0.69
HOXC11-202ENST00000546378 UHRF1BP1LA0JNW5 1464 aa19.32■□□□□ 0.68
HOXC11-202ENST00000546378 ADCY10Q96PN6 1610 aa19.32■□□□□ 0.68
HOXC11-202ENST00000546378 SCAPERQ9BY12 1400 aa19.32■□□□□ 0.68
HOXC11-202ENST00000546378 SLKQ9H2G2 1235 aaPredicted RBP19.32■□□□□ 0.68
HOXC11-202ENST00000546378 ERICH6BQ5W0A0 696 aa19.31■□□□□ 0.68
HOXC11-202ENST00000546378 CANXP27824 592 aaKnown RBP19.31■□□□□ 0.68
HOXC11-202ENST00000546378 GGT6Q6P531 493 aa19.3■□□□□ 0.68
HOXC11-202ENST00000546378 SAMD9LQ8IVG5 1584 aa19.29■□□□□ 0.68
HOXC11-202ENST00000546378 FANCAO15360 1455 aa19.28■□□□□ 0.68
HOXC11-202ENST00000546378 ARHGEF12Q9NZN5 1544 aa19.28■□□□□ 0.68
HOXC11-202ENST00000546378 ANKRD30BQ9BXX2 1392 aa19.28■□□□□ 0.68
HOXC11-202ENST00000546378 PLEKHH2Q8IVE3 1493 aa19.27■□□□□ 0.68
HOXC11-202ENST00000546378 CD109Q6YHK3 1445 aa19.27■□□□□ 0.67
HOXC11-202ENST00000546378 ARID4BQ4LE39 1312 aaPredicted RBP19.26■□□□□ 0.67
HOXC11-202ENST00000546378 DENND4BO75064 1496 aaPredicted RBP19.26■□□□□ 0.67
HOXC11-202ENST00000546378 FRAT1Q92837 279 aaPredicted RBP19.26■□□□□ 0.67
HOXC11-202ENST00000546378 PANK3Q9H999 370 aa19.24■□□□□ 0.67
HOXC11-202ENST00000546378 CDC42BPBQ9Y5S2 1711 aa19.24■□□□□ 0.67
HOXC11-202ENST00000546378 WDR43Q15061 677 aaKnown RBP eCLIP19.23■□□□□ 0.67
HOXC11-202ENST00000546378 CHGAP10645 457 aaKnown RBP19.23■□□□□ 0.67
HOXC11-202ENST00000546378 BCL2L13Q9BXK5 485 aa19.22■□□□□ 0.67
HOXC11-202ENST00000546378 GZF1Q9H116 711 aaPredicted RBP19.22■□□□□ 0.67
HOXC11-202ENST00000546378 ROCK2O75116 1388 aaKnown RBP19.22■□□□□ 0.67
HOXC11-202ENST00000546378 ADGRL1O94910 1474 aa19.22■□□□□ 0.67
HOXC11-202ENST00000546378 PZPP20742 1482 aa19.22■□□□□ 0.67
HOXC11-202ENST00000546378 FRAT2O75474 233 aaPredicted RBP19.21■□□□□ 0.67
HOXC11-202ENST00000546378 PREX2Q70Z35 1606 aa19.2■□□□□ 0.66
HOXC11-202ENST00000546378 NFKBIBQ15653 356 aa19.2■□□□□ 0.66
HOXC11-202ENST00000546378 BACH2Q9BYV9 841 aa19.2■□□□□ 0.66
HOXC11-202ENST00000546378 KIAA1107Q9UPP5 1409 aa19.2■□□□□ 0.66
HOXC11-202ENST00000546378 GCC2Q8IWJ2 1684 aa19.2■□□□□ 0.66
HOXC11-202ENST00000546378 ADGRL2O95490 1459 aa19.2■□□□□ 0.66
HOXC11-202ENST00000546378 TCERG1O14776 1098 aaKnown RBP19.19■□□□□ 0.66
HOXC11-202ENST00000546378 SMG6Q86US8 1419 aaKnown RBP19.18■□□□□ 0.66
HOXC11-202ENST00000546378 ADAMTS8Q9UP79 889 aa19.18■□□□□ 0.66
HOXC11-202ENST00000546378 RRP7AQ9Y3A4 280 aaKnown RBP19.18■□□□□ 0.66
HOXC11-202ENST00000546378 CLUAP1Q96AJ1 413 aa19.17■□□□□ 0.66
HOXC11-202ENST00000546378 MYBBP1AQ9BQG0 1328 aaKnown RBP19.17■□□□□ 0.66
HOXC11-202ENST00000546378 MYO5CQ9NQX4 1742 aa19.16■□□□□ 0.66
HOXC11-202ENST00000546378 MLECQ14165 292 aa19.15■□□□□ 0.66
HOXC11-202ENST00000546378 SHANK2Q9UPX8 1470 aa19.15■□□□□ 0.66
HOXC11-202ENST00000546378 NLRP13Q86W25 1043 aa19.14■□□□□ 0.65
HOXC11-202ENST00000546378 PPM1GO15355 546 aaPredicted RBP19.12■□□□□ 0.65
HOXC11-202ENST00000546378 DHX29Q7Z478 1369 aaKnown RBP19.12■□□□□ 0.65
HOXC11-202ENST00000546378 KTN1Q86UP2 1357 aaKnown RBP19.11■□□□□ 0.65
HOXC11-202ENST00000546378 BCAR3O75815 825 aa19.11■□□□□ 0.65
HOXC11-202ENST00000546378 GSE1Q14687 1217 aa19.11■□□□□ 0.65
HOXC11-202ENST00000546378 ARHGEF5Q12774 1597 aa19.1■□□□□ 0.65
HOXC11-202ENST00000546378 TRHP20396 242 aaPredicted RBP19.1■□□□□ 0.65
HOXC11-202ENST00000546378 PLPPR3Q6T4P5 718 aa19.1■□□□□ 0.65
HOXC11-202ENST00000546378 KNSTRNQ9Y448 316 aa19.1■□□□□ 0.65
HOXC11-202ENST00000546378 CCDC144AA2RUR9 1427 aa19.1■□□□□ 0.65
HOXC11-202ENST00000546378 RPRD2Q5VT52 1461 aaKnown RBP19.09■□□□□ 0.65
HOXC11-202ENST00000546378 ADGBQ8N7X0 1667 aa19.07■□□□□ 0.64
HOXC11-202ENST00000546378 APAF1O14727 1248 aa19.07■□□□□ 0.64
HOXC11-202ENST00000546378 WASHC2CQ9Y4E1 1318 aa19.07■□□□□ 0.64
HOXC11-202ENST00000546378 ABCC1P33527 1531 aa19.07■□□□□ 0.64
HOXC11-202ENST00000546378 COG6Q9Y2V7 657 aa19.07■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms