RNA–Protein interactions for RNA: ENST00000546298.5

YBX3-218, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 564 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-218ENST00000546298 FAM135AQ9P2D6 1515 aa14.55□□□□□ -0.08
YBX3-218ENST00000546298 FBXO31Q5XUX0 539 aaPredicted RBP14.54□□□□□ -0.08
YBX3-218ENST00000546298 TNRQ92752 1358 aa14.54□□□□□ -0.08
YBX3-218ENST00000546298 NCKAP5LQ9HCH0 1330 aa14.53□□□□□ -0.08
YBX3-218ENST00000546298 KDM5DQ9BY66 1539 aa14.51□□□□□ -0.09
YBX3-218ENST00000546298 RRP7BPQ9NSQ0 103 aa14.51□□□□□ -0.09
YBX3-218ENST00000546298 CLTCQ00610 1675 aaKnown RBP14.51□□□□□ -0.09
YBX3-218ENST00000546298 MAST1Q9Y2H9 1570 aa14.51□□□□□ -0.09
YBX3-218ENST00000546298 PZPP20742 1482 aa14.5□□□□□ -0.09
YBX3-218ENST00000546298 PLA2R1Q13018 1463 aa14.5□□□□□ -0.09
YBX3-218ENST00000546298 ABCC5O15440 1437 aa14.5□□□□□ -0.09
YBX3-218ENST00000546298 FGD6Q6ZV73 1430 aa14.5□□□□□ -0.09
YBX3-218ENST00000546298 THEMISQ8N1K5 641 aaPredicted RBP14.5□□□□□ -0.09
YBX3-218ENST00000546298 A2ML1A8K2U0 1454 aa14.5□□□□□ -0.09
YBX3-218ENST00000546298 KIF15Q9NS87 1388 aa14.49□□□□□ -0.09
YBX3-218ENST00000546298 CAMSAP1Q5T5Y3 1602 aa14.49□□□□□ -0.09
YBX3-218ENST00000546298 SHANK2Q9UPX8 1470 aa14.48□□□□□ -0.09
YBX3-218ENST00000546298 ANKRD30AQ9BXX3 1397 aa14.47□□□□□ -0.09
YBX3-218ENST00000546298 DUOX2Q9NRD8 1548 aa14.47□□□□□ -0.09
YBX3-218ENST00000546298 TCOF1Q13428 1488 aaKnown RBP14.47□□□□□ -0.09
YBX3-218ENST00000546298 ANKLE2Q86XL3 938 aa14.47□□□□□ -0.09
YBX3-218ENST00000546298 CHIC2Q9UKJ5 165 aa14.47□□□□□ -0.09
YBX3-218ENST00000546298 DAPK1P53355 1430 aa14.47□□□□□ -0.09
YBX3-218ENST00000546298 STRCQ7RTU9 1775 aa14.47□□□□□ -0.09
YBX3-218ENST00000546298 CEP170BQ9Y4F5 1589 aaPredicted RBP14.47□□□□□ -0.09
YBX3-218ENST00000546298 FAM50AQ14320 339 aaKnown RBP14.46□□□□□ -0.09
YBX3-218ENST00000546298 NLRP1Q9C000 1473 aa14.45□□□□□ -0.1
YBX3-218ENST00000546298 ERBINQ96RT1 1412 aa14.45□□□□□ -0.1
YBX3-218ENST00000546298 KANK1Q14678 1352 aa14.45□□□□□ -0.1
YBX3-218ENST00000546298 PTPN23Q9H3S7 1636 aa14.44□□□□□ -0.1
YBX3-218ENST00000546298 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.44□□□□□ -0.13e-10■■■□□ 16.3
YBX3-218ENST00000546298 MYO3AQ8NEV4 1616 aa14.44□□□□□ -0.1
YBX3-218ENST00000546298 ZNF335Q9H4Z2 1342 aaPredicted RBP14.42□□□□□ -0.1
YBX3-218ENST00000546298 ABCC3O15438 1527 aa14.42□□□□□ -0.1
YBX3-218ENST00000546298 EIF2AK4Q9P2K8 1649 aaKnown RBP14.41□□□□□ -0.1
YBX3-218ENST00000546298 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.41□□□□□ -0.1
YBX3-218ENST00000546298 RNF17Q9BXT8 1623 aaKnown RBP14.41□□□□□ -0.1
YBX3-218ENST00000546298 ZNF142P52746 1687 aaPredicted RBP14.4□□□□□ -0.1
YBX3-218ENST00000546298 ARHGAP31Q2M1Z3 1444 aa14.4□□□□□ -0.1
YBX3-218ENST00000546298 IQSEC2Q5JU85 1478 aa14.39□□□□□ -0.11
YBX3-218ENST00000546298 ERVK-7P63135 1459 aa14.38□□□□□ -0.11
YBX3-218ENST00000546298 DNMT1P26358 1616 aaKnown RBP14.38□□□□□ -0.11
YBX3-218ENST00000546298 LTBP4Q8N2S1 1624 aa14.38□□□□□ -0.11
YBX3-218ENST00000546298 UGGT1Q9NYU2 1555 aa14.38□□□□□ -0.11
YBX3-218ENST00000546298 SPATA31D1Q6ZQQ2 1576 aa14.36□□□□□ -0.11
YBX3-218ENST00000546298 STAG3Q9UJ98 1225 aa14.36□□□□□ -0.11
YBX3-218ENST00000546298 ZC3H13Q5T200 1668 aaKnown RBP14.36□□□□□ -0.11
YBX3-218ENST00000546298 MROH1Q8NDA8 1641 aa14.35□□□□□ -0.11
YBX3-218ENST00000546298 ADGRL2O95490 1459 aa14.35□□□□□ -0.11
YBX3-218ENST00000546298 NPHP4O75161 1426 aaPredicted RBP14.34□□□□□ -0.11
YBX3-218ENST00000546298 ANKRD50Q9ULJ7 1429 aa14.34□□□□□ -0.11
YBX3-218ENST00000546298 UBAP1LF5GYI3 381 aa14.34□□□□□ -0.11
YBX3-218ENST00000546298 EID1Q9Y6B2 187 aa14.34□□□□□ -0.11
YBX3-218ENST00000546298 PRDM15P57071 1507 aaPredicted RBP14.34□□□□□ -0.11
YBX3-218ENST00000546298 TXNDC2Q86VQ3 553 aa14.33□□□□□ -0.12
YBX3-218ENST00000546298 MED14O60244 1454 aa14.31□□□□□ -0.12
YBX3-218ENST00000546298 CROCC2H7BZ55 1655 aa14.31□□□□□ -0.12
YBX3-218ENST00000546298 SLC52A1Q9NWF4 448 aa14.31□□□□□ -0.12
YBX3-218ENST00000546298 LMTK2Q8IWU2 1503 aa14.31□□□□□ -0.12
YBX3-218ENST00000546298 TOM1O60784 492 aa14.3□□□□□ -0.12
YBX3-218ENST00000546298 IDI1Q13907 227 aa14.3□□□□□ -0.12
YBX3-218ENST00000546298 ROCK1Q13464 1354 aa14.3□□□□□ -0.12
YBX3-218ENST00000546298 PPARGC1BQ86YN6 1023 aaKnown RBP14.29□□□□□ -0.12
YBX3-218ENST00000546298 LTKP29376 864 aa14.28□□□□□ -0.12
YBX3-218ENST00000546298 CPS1P31327 1500 aa14.28□□□□□ -0.12
YBX3-218ENST00000546298 ITGAEP38570 1179 aa14.28□□□□□ -0.12
YBX3-218ENST00000546298 NEURL4Q96JN8 1562 aa14.27□□□□□ -0.12
YBX3-218ENST00000546298 SCAF11Q99590 1463 aaKnown RBP14.27□□□□□ -0.12
YBX3-218ENST00000546298 TMEM2Q9UHN6 1383 aa14.27□□□□□ -0.12
YBX3-218ENST00000546298 FOXD1Q16676 465 aa14.27□□□□□ -0.13
YBX3-218ENST00000546298 DEPDC5O75140 1603 aa14.26□□□□□ -0.13
YBX3-218ENST00000546298 VWDEQ8N2E2 1590 aa14.26□□□□□ -0.13
YBX3-218ENST00000546298 HDGFP51858 240 aaKnown RBP14.26□□□□□ -0.13
YBX3-218ENST00000546298 NOS1P29475 1434 aa14.25□□□□□ -0.13
YBX3-218ENST00000546298 ARHGAP23Q9P227 1491 aa14.25□□□□□ -0.13
YBX3-218ENST00000546298 CEP152O94986 1710 aa14.24□□□□□ -0.13
YBX3-218ENST00000546298 SLIT1O75093 1534 aa14.24□□□□□ -0.13
YBX3-218ENST00000546298 RPRD2Q5VT52 1461 aaKnown RBP14.24□□□□□ -0.13
YBX3-218ENST00000546298 SCAF1Q9H7N4 1312 aaKnown RBP14.23□□□□□ -0.13
YBX3-218ENST00000546298 NUP155O75694 1391 aa14.22□□□□□ -0.13
YBX3-218ENST00000546298 POLR1AO95602 1720 aaPredicted RBP14.21□□□□□ -0.13
YBX3-218ENST00000546298 EFCAB6Q5THR3 1501 aa14.21□□□□□ -0.13
YBX3-218ENST00000546298 PIP4K2BP78356 416 aa14.21□□□□□ -0.13
YBX3-218ENST00000546298 BCANQ96GW7 911 aa14.21□□□□□ -0.13
YBX3-218ENST00000546298 DISP3Q9P2K9 1392 aa14.2□□□□□ -0.14
YBX3-218ENST00000546298 IQGAP1P46940 1657 aa14.19□□□□□ -0.14
YBX3-218ENST00000546298 UBR1Q8IWV7 1749 aa14.18□□□□□ -0.14
YBX3-218ENST00000546298 PPP1R15AO75807 674 aaPredicted RBP14.18□□□□□ -0.14
YBX3-218ENST00000546298 CHGAP10645 457 aaKnown RBP14.18□□□□□ -0.14
YBX3-218ENST00000546298 KCNA6P17658 529 aa14.18□□□□□ -0.14
YBX3-218ENST00000546298 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.18□□□□□ -0.14
YBX3-218ENST00000546298 SLC26A8Q96RN1 970 aa14.17□□□□□ -0.14
YBX3-218ENST00000546298 RRBP1Q9P2E9 1410 aaKnown RBP14.16□□□□□ -0.14
YBX3-218ENST00000546298 LRRC7Q96NW7 1537 aa14.16□□□□□ -0.14
YBX3-218ENST00000546298 CFAP65Q6ZU64 1925 aaKnown RBP14.16□□□□□ -0.14
YBX3-218ENST00000546298 PIK3C2BO00750 1634 aa14.15□□□□□ -0.14
YBX3-218ENST00000546298 SYNMO15061 1565 aa14.15□□□□□ -0.14
YBX3-218ENST00000546298 HSPA1LP34931 641 aa14.15□□□□□ -0.14
YBX3-218ENST00000546298 PROSER2Q86WR7 435 aaPredicted RBP14.14□□□□□ -0.15
YBX3-218ENST00000546298 ADGRB3O60242 1522 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms