RNA–Protein interactions for RNA: ENST00000545942.5

CHD4-214, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 1 (best)

Gene CHD4, Length 1,317 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-214ENST00000545942 WASHC2CQ9Y4E1 1318 aa35.58■■■■□ 3.29
CHD4-214ENST00000545942 MYO3AQ8NEV4 1616 aa35.58■■■■□ 3.29
CHD4-214ENST00000545942 CAMSAP1Q5T5Y3 1602 aa35.58■■■■□ 3.29
CHD4-214ENST00000545942 ZNF142P52746 1687 aaPredicted RBP35.55■■■■□ 3.28
CHD4-214ENST00000545942 CEP170BQ9Y4F5 1589 aaPredicted RBP35.54■■■■□ 3.28
CHD4-214ENST00000545942 PZPP20742 1482 aa35.52■■■■□ 3.28
CHD4-214ENST00000545942 PTPN23Q9H3S7 1636 aa35.5■■■■□ 3.27
CHD4-214ENST00000545942 FBXO31Q5XUX0 539 aaPredicted RBP35.49■■■■□ 3.27
CHD4-214ENST00000545942 FGD6Q6ZV73 1430 aa35.48■■■■□ 3.27
CHD4-214ENST00000545942 PLA2R1Q13018 1463 aa35.48■■■■□ 3.27
CHD4-214ENST00000545942 RNF17Q9BXT8 1623 aaKnown RBP35.47■■■■□ 3.27
CHD4-214ENST00000545942 TNRQ92752 1358 aa35.47■■■■□ 3.27
CHD4-214ENST00000545942 SHANK2Q9UPX8 1470 aa35.47■■■■□ 3.27
CHD4-214ENST00000545942 ABCC5O15440 1437 aa35.46■■■■□ 3.27
CHD4-214ENST00000545942 EIF2AK4Q9P2K8 1649 aaKnown RBP35.46■■■■□ 3.27
CHD4-214ENST00000545942 A2ML1A8K2U0 1454 aa35.46■■■■□ 3.27
CHD4-214ENST00000545942 NCKAP5LQ9HCH0 1330 aa35.45■■■■□ 3.26
CHD4-214ENST00000545942 PKD2Q13563 968 aa35.44■■■■□ 3.26
CHD4-214ENST00000545942 DUOX2Q9NRD8 1548 aa35.44■■■■□ 3.26
CHD4-214ENST00000545942 TCOF1Q13428 1488 aaKnown RBP35.43■■■■□ 3.26
CHD4-214ENST00000545942 DAPK1P53355 1430 aa35.41■■■■□ 3.26
CHD4-214ENST00000545942 KIF15Q9NS87 1388 aa35.41■■■■□ 3.26
CHD4-214ENST00000545942 CROCC2H7BZ55 1655 aa35.39■■■■□ 3.26
CHD4-214ENST00000545942 ABCC3O15438 1527 aa35.39■■■■□ 3.26
CHD4-214ENST00000545942 DNMT1P26358 1616 aaKnown RBP35.37■■■■□ 3.25
CHD4-214ENST00000545942 ZC3H13Q5T200 1668 aaKnown RBP35.36■■■■□ 3.25
CHD4-214ENST00000545942 RRP7BPQ9NSQ0 103 aa35.36■■■■□ 3.25
CHD4-214ENST00000545942 ERBINQ96RT1 1412 aa35.34■■■■□ 3.25
CHD4-214ENST00000545942 MROH1Q8NDA8 1641 aa35.34■■■■□ 3.25
CHD4-214ENST00000545942 LTBP4Q8N2S1 1624 aa35.33■■■■□ 3.25
CHD4-214ENST00000545942 NLRP1Q9C000 1473 aa35.32■■■■□ 3.24
CHD4-214ENST00000545942 ANKRD30AQ9BXX3 1397 aa35.28■■■■□ 3.24
CHD4-214ENST00000545942 CHIC2Q9UKJ5 165 aa35.27■■■■□ 3.24
CHD4-214ENST00000545942 SPATA31D1Q6ZQQ2 1576 aa35.25■■■■□ 3.23
CHD4-214ENST00000545942 THEMISQ8N1K5 641 aaPredicted RBP35.25■■■■□ 3.23
CHD4-214ENST00000545942 PRDM15P57071 1507 aaPredicted RBP35.25■■■■□ 3.23
CHD4-214ENST00000545942 ERVK-7P63135 1459 aa35.23■■■■□ 3.23
CHD4-214ENST00000545942 ZNF335Q9H4Z2 1342 aaPredicted RBP35.23■■■■□ 3.23
CHD4-214ENST00000545942 UGGT1Q9NYU2 1555 aa35.23■■■■□ 3.23
CHD4-214ENST00000545942 FAM50AQ14320 339 aaKnown RBP35.22■■■■□ 3.23
CHD4-214ENST00000545942 CEP152O94986 1710 aa35.21■■■■□ 3.23
CHD4-214ENST00000545942 IQSEC2Q5JU85 1478 aa35.21■■■■□ 3.23
CHD4-214ENST00000545942 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP35.21■■■■□ 3.23
CHD4-214ENST00000545942 ANKLE2Q86XL3 938 aa35.18■■■■□ 3.22
CHD4-214ENST00000545942 GRWD1Q9BQ67 446 aaKnown RBP eCLIP35.18■■■■□ 3.221e-10■■■■□ 22
CHD4-214ENST00000545942 ARHGAP31Q2M1Z3 1444 aa35.16■■■■□ 3.22
CHD4-214ENST00000545942 DEPDC5O75140 1603 aa35.16■■■■□ 3.22
CHD4-214ENST00000545942 KANK1Q14678 1352 aa35.16■■■■□ 3.22
CHD4-214ENST00000545942 ADGRL2O95490 1459 aa35.15■■■■□ 3.22
CHD4-214ENST00000545942 POLR1AO95602 1720 aaPredicted RBP35.15■■■■□ 3.22
CHD4-214ENST00000545942 NEURL4Q96JN8 1562 aa35.15■■■■□ 3.22
CHD4-214ENST00000545942 MED14O60244 1454 aa35.06■■■■□ 3.2
CHD4-214ENST00000545942 LMTK2Q8IWU2 1503 aa35.04■■■■□ 3.2
CHD4-214ENST00000545942 NPHP4O75161 1426 aaPredicted RBP35.04■■■■□ 3.2
CHD4-214ENST00000545942 VWDEQ8N2E2 1590 aa35.04■■■■□ 3.2
CHD4-214ENST00000545942 ANKRD50Q9ULJ7 1429 aa35.02■■■■□ 3.2
CHD4-214ENST00000545942 CFAP65Q6ZU64 1925 aaKnown RBP35.01■■■■□ 3.19
CHD4-214ENST00000545942 UBR1Q8IWV7 1749 aa34.98■■■■□ 3.19
CHD4-214ENST00000545942 CPS1P31327 1500 aa34.96■■■■□ 3.19
CHD4-214ENST00000545942 IQGAP1P46940 1657 aa34.93■■■■□ 3.18
CHD4-214ENST00000545942 UBAP1LF5GYI3 381 aa34.93■■■■□ 3.18
CHD4-214ENST00000545942 EFCAB6Q5THR3 1501 aa34.92■■■■□ 3.18
CHD4-214ENST00000545942 SCAF11Q99590 1463 aaKnown RBP34.9■■■■□ 3.18
CHD4-214ENST00000545942 ARHGAP23Q9P227 1491 aa34.9■■■■□ 3.18
CHD4-214ENST00000545942 PPARGC1BQ86YN6 1023 aaKnown RBP34.9■■■■□ 3.18
CHD4-214ENST00000545942 SLIT1O75093 1534 aa34.9■■■■□ 3.18
CHD4-214ENST00000545942 ROCK1Q13464 1354 aa34.9■■■■□ 3.18
CHD4-214ENST00000545942 PIK3C2BO00750 1634 aa34.87■■■■□ 3.17
CHD4-214ENST00000545942 STAG3Q9UJ98 1225 aa34.87■■■■□ 3.17
CHD4-214ENST00000545942 NOS1P29475 1434 aa34.87■■■■□ 3.17
CHD4-214ENST00000545942 TXNDC2Q86VQ3 553 aa34.86■■■■□ 3.17
CHD4-214ENST00000545942 LTKP29376 864 aa34.85■■■■□ 3.17
CHD4-214ENST00000545942 IDI1Q13907 227 aa34.85■■■■□ 3.17
CHD4-214ENST00000545942 EID1Q9Y6B2 187 aa34.84■■■■□ 3.17
CHD4-214ENST00000545942 RPRD2Q5VT52 1461 aaKnown RBP34.84■■■■□ 3.17
CHD4-214ENST00000545942 SYNMO15061 1565 aa34.83■■■■□ 3.17
CHD4-214ENST00000545942 TMEM2Q9UHN6 1383 aa34.83■■■■□ 3.17
CHD4-214ENST00000545942 ITGAEP38570 1179 aa34.8■■■■□ 3.16
CHD4-214ENST00000545942 SLC52A1Q9NWF4 448 aa34.8■■■■□ 3.16
CHD4-214ENST00000545942 KDM5AP29375 1690 aaKnown RBP34.79■■■■□ 3.16
CHD4-214ENST00000545942 UNC13BO14795 1591 aa34.77■■■■□ 3.16
CHD4-214ENST00000545942 TET3O43151 1660 aa34.76■■■■□ 3.16
CHD4-214ENST00000545942 TOM1O60784 492 aa34.75■■■■□ 3.15
CHD4-214ENST00000545942 ADGRB3O60242 1522 aa34.72■■■■□ 3.15
CHD4-214ENST00000545942 LRRC7Q96NW7 1537 aa34.68■■■■□ 3.14
CHD4-214ENST00000545942 GCC2Q8IWJ2 1684 aa34.68■■■■□ 3.14
CHD4-214ENST00000545942 STRCP1A6NGW2 1772 aa34.68■■■■□ 3.14
CHD4-214ENST00000545942 SCAF1Q9H7N4 1312 aaKnown RBP34.67■■■■□ 3.14
CHD4-214ENST00000545942 PIP4K2BP78356 416 aa34.66■■■■□ 3.14
CHD4-214ENST00000545942 IQGAP3Q86VI3 1631 aa34.64■■■■□ 3.14
CHD4-214ENST00000545942 NUP155O75694 1391 aa34.64■■■■□ 3.14
CHD4-214ENST00000545942 DISP3Q9P2K9 1392 aa34.64■■■■□ 3.14
CHD4-214ENST00000545942 RRBP1Q9P2E9 1410 aaKnown RBP34.64■■■■□ 3.14
CHD4-214ENST00000545942 E9PCH4 1651 aa34.59■■■■□ 3.13
CHD4-214ENST00000545942 SLC26A8Q96RN1 970 aa34.55■■■■□ 3.12
CHD4-214ENST00000545942 ALKQ9UM73 1620 aa34.55■■■■□ 3.12
CHD4-214ENST00000545942 ZFYVE9O95405 1425 aa34.54■■■■□ 3.12
CHD4-214ENST00000545942 HSPA1LP34931 641 aa34.54■■■■□ 3.12
CHD4-214ENST00000545942 HDGFP51858 240 aaKnown RBP34.54■■■■□ 3.12
CHD4-214ENST00000545942 TMEM131LA2VDJ0 1609 aa34.53■■■■□ 3.12
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms