RNA–Protein interactions for RNA: ENST00000544272.1

USP28-211, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 656 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-211ENST00000544272 TTLL12Q14166 644 aaPredicted RBP9.36□□□□□ -0.91
USP28-211ENST00000544272 TSR1Q2NL82 804 aaKnown RBP9.36□□□□□ -0.91
USP28-211ENST00000544272 GOPCQ9HD26 462 aa9.36□□□□□ -0.91
USP28-211ENST00000544272 GIGYF2Q6Y7W6 1299 aaKnown RBP9.35□□□□□ -0.91
USP28-211ENST00000544272 FBXW7Q969H0 707 aa9.35□□□□□ -0.91
USP28-211ENST00000544272 RBM33Q96EV2 1170 aaKnown RBP9.35□□□□□ -0.91
USP28-211ENST00000544272 REPIN1Q9BWE0 567 aaKnown RBP9.35□□□□□ -0.91
USP28-211ENST00000544272 MS4A1P11836 297 aa9.34□□□□□ -0.91
USP28-211ENST00000544272 FOSBP53539 338 aa9.34□□□□□ -0.91
USP28-211ENST00000544272 PHOX2BQ99453 314 aa9.33□□□□□ -0.92
USP28-211ENST00000544272 CLCN1P35523 988 aa9.31□□□□□ -0.92
USP28-211ENST00000544272 CERKQ8TCT0 537 aa9.31□□□□□ -0.92
USP28-211ENST00000544272 TTC13Q8NBP0 860 aa9.3□□□□□ -0.92
USP28-211ENST00000544272 SUPT5HO00267 1087 aaKnown RBP9.29□□□□□ -0.92
USP28-211ENST00000544272 POTEJP0CG39 1038 aa9.29□□□□□ -0.92
USP28-211ENST00000544272 HOXB3P14651 431 aaPredicted RBP9.29□□□□□ -0.92
USP28-211ENST00000544272 C6orf132Q5T0Z8 1188 aa9.29□□□□□ -0.92
USP28-211ENST00000544272 ZMYND15Q9H091 742 aa9.29□□□□□ -0.92
USP28-211ENST00000544272 GPCPD1Q9NPB8 672 aa9.29□□□□□ -0.92
USP28-211ENST00000544272 ZDHHC16Q969W1 377 aa9.28□□□□□ -0.92
USP28-211ENST00000544272 RBM27Q9P2N5 1060 aaKnown RBP9.28□□□□□ -0.92
USP28-211ENST00000544272 MDM2Q00987 491 aaPredicted RBP9.27□□□□□ -0.93
USP28-211ENST00000544272 METTL3Q86U44 580 aaKnown RBP9.27□□□□□ -0.93
USP28-211ENST00000544272 ZSWIM6Q9HCJ5 1215 aa9.27□□□□□ -0.93
USP28-211ENST00000544272 OATP04181 439 aa9.26□□□□□ -0.93
USP28-211ENST00000544272 DOK7Q18PE1 504 aa9.26□□□□□ -0.93
USP28-211ENST00000544272 GPR153Q6NV75 609 aa9.26□□□□□ -0.93
USP28-211ENST00000544272 PADI6Q6TGC4 694 aa9.26□□□□□ -0.93
USP28-211ENST00000544272 ADGRG1Q9Y653 693 aa9.26□□□□□ -0.93
USP28-211ENST00000544272 ONECUT3O60422 494 aaPredicted RBP9.25□□□□□ -0.93
USP28-211ENST00000544272 NUDT7P0C024 238 aa9.25□□□□□ -0.93
USP28-211ENST00000544272 SH3D19Q5HYK7 790 aa9.25□□□□□ -0.93
USP28-211ENST00000544272 ZNF454Q8N9F8 522 aa9.25□□□□□ -0.93
USP28-211ENST00000544272 PXYLP1Q8TE99 480 aa9.25□□□□□ -0.93
USP28-211ENST00000544272 KHSRPQ92945 711 aaKnown RBP eCLIP9.25□□□□□ -0.93
USP28-211ENST00000544272 SSTR3P32745 418 aaPredicted RBP9.24□□□□□ -0.93
USP28-211ENST00000544272 ARSIQ5FYB1 569 aa9.24□□□□□ -0.93
USP28-211ENST00000544272 ADAM33Q9BZ11 813 aa9.24□□□□□ -0.93
USP28-211ENST00000544272 FAM217BQ9NTX9 383 aaPredicted RBP9.24□□□□□ -0.93
USP28-211ENST00000544272 FLIIQ13045 1269 aa9.23□□□□□ -0.93
USP28-211ENST00000544272 FAM161AQ3B820 660 aa9.23□□□□□ -0.93
USP28-211ENST00000544272 PCMTD1Q96MG8 357 aaPredicted RBP9.23□□□□□ -0.93
USP28-211ENST00000544272 POTEB2H3BUK9 544 aa9.22□□□□□ -0.93
USP28-211ENST00000544272 RSPH6AQ9H0K4 717 aa9.22□□□□□ -0.93
USP28-211ENST00000544272 RIMBP2O15034 1052 aa9.21□□□□□ -0.94
USP28-211ENST00000544272 PRSS12P56730 875 aa9.21□□□□□ -0.94
USP28-211ENST00000544272 HOMEZQ8IX15 550 aa9.21□□□□□ -0.94
USP28-211ENST00000544272 SKIV2LQ15477 1246 aaKnown RBP9.2□□□□□ -0.94
USP28-211ENST00000544272 NLRP7Q8WX94 980 aa9.19□□□□□ -0.94
USP28-211ENST00000544272 BEGAINQ9BUH8 593 aa9.19□□□□□ -0.94
USP28-211ENST00000544272 NISCHQ9Y2I1 1504 aa9.19□□□□□ -0.94
USP28-211ENST00000544272 CDCA7LQ96GN5 454 aa9.18□□□□□ -0.94
USP28-211ENST00000544272 LHX6Q9UPM6 363 aa9.18□□□□□ -0.94
USP28-211ENST00000544272 FAM198AQ9UFP1 575 aa9.17□□□□□ -0.94
USP28-211ENST00000544272 PSDA5PKW4 1024 aaPredicted RBP9.16□□□□□ -0.94
USP28-211ENST00000544272 RBM46Q8TBY0 533 aaKnown RBP9.16□□□□□ -0.94
USP28-211ENST00000544272 BCL2L12Q9HB09 334 aa9.16□□□□□ -0.94
USP28-211ENST00000544272 COL9A1P20849 921 aa9.15□□□□□ -0.94
USP28-211ENST00000544272 PPP4R3BQ5MIZ7 849 aa9.15□□□□□ -0.94
USP28-211ENST00000544272 MAMSTRQ6ZN01 415 aa9.15□□□□□ -0.94
USP28-211ENST00000544272 EYA1Q99502 592 aa9.15□□□□□ -0.94
USP28-211ENST00000544272 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.14□□□□□ -0.95
USP28-211ENST00000544272 MYSM1Q5VVJ2 828 aa9.14□□□□□ -0.95
USP28-211ENST00000544272 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.14□□□□□ -0.95
USP28-211ENST00000544272 SCUBE2Q9NQ36 999 aa9.14□□□□□ -0.95
USP28-211ENST00000544272 ZNF710Q8N1W2 664 aa9.13□□□□□ -0.95
USP28-211ENST00000544272 PROCA1Q8NCQ7 364 aaPredicted RBP9.13□□□□□ -0.95
USP28-211ENST00000544272 PPP1R3GB7ZBB8 358 aa9.12□□□□□ -0.95
USP28-211ENST00000544272 MCM6Q14566 821 aa9.12□□□□□ -0.95
USP28-211ENST00000544272 TSKSQ9UJT2 592 aa9.12□□□□□ -0.95
USP28-211ENST00000544272 RCCD1A6NED2 376 aa9.11□□□□□ -0.95
USP28-211ENST00000544272 A6NJR5 290 aa9.11□□□□□ -0.95
USP28-211ENST00000544272 TBC1D2Q9BYX2 928 aa9.1□□□□□ -0.95
USP28-211ENST00000544272 C1orf115Q9H7X2 142 aa9.1□□□□□ -0.95
USP28-211ENST00000544272 C3orf80F5H4A9 247 aa9.09□□□□□ -0.95
USP28-211ENST00000544272 HOXB1P14653 301 aaPredicted RBP9.09□□□□□ -0.95
USP28-211ENST00000544272 PTPREP23469 700 aa9.09□□□□□ -0.95
USP28-211ENST00000544272 DIXDC1Q155Q3 683 aa9.09□□□□□ -0.95
USP28-211ENST00000544272 POLR3EQ9NVU0 708 aa9.09□□□□□ -0.95
USP28-211ENST00000544272 CD46P15529 392 aa9.08□□□□□ -0.96
USP28-211ENST00000544272 CLK2P49760 499 aaKnown RBP9.08□□□□□ -0.96
USP28-211ENST00000544272 TRIM6-TRIM34B2RNG4 842 aa9.07□□□□□ -0.96
USP28-211ENST00000544272 SNPHO15079 494 aa9.07□□□□□ -0.96
USP28-211ENST00000544272 NUDT18Q6ZVK8 323 aa9.07□□□□□ -0.96
USP28-211ENST00000544272 DNAJB2P25686 324 aa9.06□□□□□ -0.96
USP28-211ENST00000544272 TUSC1Q2TAM9 212 aa9.06□□□□□ -0.96
USP28-211ENST00000544272 LHX8Q68G74 356 aa9.06□□□□□ -0.96
USP28-211ENST00000544272 SPIRE2Q8WWL2 714 aa9.06□□□□□ -0.96
USP28-211ENST00000544272 TATDN2Q93075 761 aa9.06□□□□□ -0.96
USP28-211ENST00000544272 NBPF26B4DH59 902 aa9.05□□□□□ -0.96
USP28-211ENST00000544272 SULF1Q8IWU6 871 aa9.05□□□□□ -0.96
USP28-211ENST00000544272 CLUAP1Q96AJ1 413 aa9.05□□□□□ -0.96
USP28-211ENST00000544272 TMEM134Q9H6X4 195 aa9.05□□□□□ -0.96
USP28-211ENST00000544272 TRAK2O60296 914 aa9.04□□□□□ -0.96
USP28-211ENST00000544272 UBTFP17480 764 aaKnown RBP9.04□□□□□ -0.96
USP28-211ENST00000544272 FBXO31Q5XUX0 539 aaPredicted RBP9.04□□□□□ -0.96
USP28-211ENST00000544272 PPP2R2DQ66LE6 453 aa9.04□□□□□ -0.96
USP28-211ENST00000544272 LIMD1Q9UGP4 676 aa9.04□□□□□ -0.96
USP28-211ENST00000544272 PACS2Q86VP3 889 aa9.03□□□□□ -0.96
USP28-211ENST00000544272 BANK1Q8NDB2 785 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms