RNA–Protein interactions for RNA: ENST00000543555.5

MSH2-206, Transcript of mutS homolog 2, humanhuman

TSL 2 BASIC

Gene MSH2, Length 3,024 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-206ENST00000543555 KDM5CP41229 1560 aa19.3■□□□□ 0.68
MSH2-206ENST00000543555 CD109Q6YHK3 1445 aa19.29■□□□□ 0.68
MSH2-206ENST00000543555 DUOX2Q9NRD8 1548 aa19.29■□□□□ 0.68
MSH2-206ENST00000543555 ABCC1P33527 1531 aa19.28■□□□□ 0.68
MSH2-206ENST00000543555 PRKRIP1Q9H875 184 aaPredicted RBP19.27■□□□□ 0.67
MSH2-206ENST00000543555 IQGAP3Q86VI3 1631 aa19.26■□□□□ 0.67
MSH2-206ENST00000543555 BCORL1Q5H9F3 1711 aa19.26■□□□□ 0.67
MSH2-206ENST00000543555 RAPGEF3O95398 923 aa19.25■□□□□ 0.67
MSH2-206ENST00000543555 ERBINQ96RT1 1412 aa19.25■□□□□ 0.67
MSH2-206ENST00000543555 CCDC144AA2RUR9 1427 aa19.24■□□□□ 0.67
MSH2-206ENST00000543555 FANCAO15360 1455 aa19.24■□□□□ 0.67
MSH2-206ENST00000543555 MAGI2Q86UL8 1455 aa19.24■□□□□ 0.67
MSH2-206ENST00000543555 ARAP3Q8WWN8 1544 aa19.24■□□□□ 0.67
MSH2-206ENST00000543555 TRAPPC8Q9Y2L5 1435 aa19.23■□□□□ 0.67
MSH2-206ENST00000543555 DCAF11Q8TEB1 546 aa19.23■□□□□ 0.67
MSH2-206ENST00000543555 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.23■□□□□ 0.676e-7■□□□□ 9.5
MSH2-206ENST00000543555 PLA2R1Q13018 1463 aa19.22■□□□□ 0.67
MSH2-206ENST00000543555 ARID4BQ4LE39 1312 aaPredicted RBP19.22■□□□□ 0.67
MSH2-206ENST00000543555 KDM2AQ9Y2K7 1162 aa19.22■□□□□ 0.67
MSH2-206ENST00000543555 CARD11Q9BXL7 1154 aa19.22■□□□□ 0.67
MSH2-206ENST00000543555 TSPOAP1O95153 1857 aa19.21■□□□□ 0.67
MSH2-206ENST00000543555 HNRNPUQ00839 825 aaKnown RBP eCLIP19.2■□□□□ 0.66
MSH2-206ENST00000543555 SCAPERQ9BY12 1400 aa19.2■□□□□ 0.66
MSH2-206ENST00000543555 CCDC184Q52MB2 194 aa19.19■□□□□ 0.66
MSH2-206ENST00000543555 ABCA9Q8IUA7 1624 aa19.18■□□□□ 0.66
MSH2-206ENST00000543555 DHX29Q7Z478 1369 aaKnown RBP19.17■□□□□ 0.66
MSH2-206ENST00000543555 RTEL1-TNFRSF6BF6WH68 1400 aa19.17■□□□□ 0.66
MSH2-206ENST00000543555 ATP10AO60312 1499 aa19.16■□□□□ 0.66
MSH2-206ENST00000543555 PRAG1Q86YV5 1406 aa19.16■□□□□ 0.66
MSH2-206ENST00000543555 ADGRL1O94910 1474 aa19.16■□□□□ 0.66
MSH2-206ENST00000543555 SPAG9O60271 1321 aaKnown RBP19.15■□□□□ 0.66
MSH2-206ENST00000543555 ZFYVE16Q7Z3T8 1539 aa19.15■□□□□ 0.66
MSH2-206ENST00000543555 FKBP8Q14318 412 aa19.15■□□□□ 0.66
MSH2-206ENST00000543555 ROCK2O75116 1388 aaKnown RBP19.15■□□□□ 0.66
MSH2-206ENST00000543555 TRPM1Q7Z4N2 1603 aa19.14■□□□□ 0.66
MSH2-206ENST00000543555 MRS2Q9HD23 443 aa19.14■□□□□ 0.66
MSH2-206ENST00000543555 POLR3GLQ9BT43 218 aa19.14■□□□□ 0.65
MSH2-206ENST00000543555 A2MP01023 1474 aa19.14■□□□□ 0.65
MSH2-206ENST00000543555 ST20-MTHFSA0A0A6YYL1 179 aa19.12■□□□□ 0.65
MSH2-206ENST00000543555 NEFLP07196 543 aa19.12■□□□□ 0.65
MSH2-206ENST00000543555 RGL3Q3MIN7 710 aa19.12■□□□□ 0.65
MSH2-206ENST00000543555 DIP2BQ9P265 1576 aa19.12■□□□□ 0.65
MSH2-206ENST00000543555 FAM9BQ8IZU0 186 aa19.09■□□□□ 0.65
MSH2-206ENST00000543555 GPRASP1Q5JY77 1395 aa19.08■□□□□ 0.65
MSH2-206ENST00000543555 INO80Q9ULG1 1556 aaPredicted RBP19.08■□□□□ 0.64
MSH2-206ENST00000543555 ATP7AQ04656 1500 aa19.07■□□□□ 0.64
MSH2-206ENST00000543555 LAMC1P11047 1609 aa19.07■□□□□ 0.64
MSH2-206ENST00000543555 BCANQ96GW7 911 aa19.06■□□□□ 0.64
MSH2-206ENST00000543555 DEPDC5O75140 1603 aa19.06■□□□□ 0.64
MSH2-206ENST00000543555 EIF2AK4Q9P2K8 1649 aaKnown RBP19.06■□□□□ 0.64
MSH2-206ENST00000543555 E9PCH4 1651 aa19.05■□□□□ 0.64
MSH2-206ENST00000543555 NBPF1Q3BBV0 1214 aa19.05■□□□□ 0.64
MSH2-206ENST00000543555 PRDM15P57071 1507 aaPredicted RBP19.03■□□□□ 0.64
MSH2-206ENST00000543555 MAP3K4Q9Y6R4 1608 aa19.02■□□□□ 0.64
MSH2-206ENST00000543555 KIF13AQ9H1H9 1805 aa19.02■□□□□ 0.63
MSH2-206ENST00000543555 TRPM2O94759 1503 aa19.02■□□□□ 0.63
MSH2-206ENST00000543555 ZBED9Q6R2W3 1325 aa19.01■□□□□ 0.63
MSH2-206ENST00000543555 COL17A1Q9UMD9 1497 aaPredicted RBP19■□□□□ 0.63
MSH2-206ENST00000543555 KIF3BO15066 747 aa19■□□□□ 0.63
MSH2-206ENST00000543555 PTPRTO14522 1441 aa19■□□□□ 0.63
MSH2-206ENST00000543555 TET3O43151 1660 aa18.99■□□□□ 0.63
MSH2-206ENST00000543555 CNGB1Q14028 1251 aaPredicted RBP18.99■□□□□ 0.63
MSH2-206ENST00000543555 VWDEQ8N2E2 1590 aa18.99■□□□□ 0.63
MSH2-206ENST00000543555 SPHKAPQ2M3C7 1700 aa18.98■□□□□ 0.63
MSH2-206ENST00000543555 KANK1Q14678 1352 aa18.98■□□□□ 0.63
MSH2-206ENST00000543555 RNF17Q9BXT8 1623 aaKnown RBP18.97■□□□□ 0.63
MSH2-206ENST00000543555 GGT6Q6P531 493 aa18.97■□□□□ 0.63
MSH2-206ENST00000543555 GLI2P10070 1586 aa18.97■□□□□ 0.63
MSH2-206ENST00000543555 KTN1Q86UP2 1357 aaKnown RBP18.96■□□□□ 0.63
MSH2-206ENST00000543555 POGZQ7Z3K3 1410 aa18.96■□□□□ 0.63
MSH2-206ENST00000543555 CEP152O94986 1710 aa18.96■□□□□ 0.63
MSH2-206ENST00000543555 CLTCL1P53675 1640 aa18.95■□□□□ 0.62
MSH2-206ENST00000543555 YEATS2Q9ULM3 1422 aa18.95■□□□□ 0.62
MSH2-206ENST00000543555 TESK2Q96S53 571 aa18.95■□□□□ 0.62
MSH2-206ENST00000543555 PPRC1Q5VV67 1664 aaKnown RBP18.94■□□□□ 0.62
MSH2-206ENST00000543555 ZNF518AQ6AHZ1 1483 aa18.94■□□□□ 0.62
MSH2-206ENST00000543555 MLECQ14165 292 aa18.94■□□□□ 0.62
MSH2-206ENST00000543555 MADDQ8WXG6 1647 aa18.94■□□□□ 0.62
MSH2-206ENST00000543555 MROH1Q8NDA8 1641 aa18.94■□□□□ 0.62
MSH2-206ENST00000543555 NEO1Q92859 1461 aa18.93■□□□□ 0.62
MSH2-206ENST00000543555 RALBP1Q15311 655 aa18.92■□□□□ 0.62
MSH2-206ENST00000543555 KIDINS220Q9ULH0 1771 aa18.92■□□□□ 0.62
MSH2-206ENST00000543555 DISP3Q9P2K9 1392 aa18.92■□□□□ 0.62
MSH2-206ENST00000543555 MYBBP1AQ9BQG0 1328 aaKnown RBP18.91■□□□□ 0.62
MSH2-206ENST00000543555 PNISRQ8TF01 805 aaKnown RBP18.91■□□□□ 0.62
MSH2-206ENST00000543555 STAC3Q96MF2 364 aa18.91■□□□□ 0.62
MSH2-206ENST00000543555 TMC1Q8TDI8 760 aa18.9■□□□□ 0.62
MSH2-206ENST00000543555 TSHZ2Q9NRE2 1034 aa18.9■□□□□ 0.62
MSH2-206ENST00000543555 BRD4O60885 1362 aaPredicted RBP18.9■□□□□ 0.62
MSH2-206ENST00000543555 CFAP74Q9C0B2 1584 aa18.89■□□□□ 0.61
MSH2-206ENST00000543555 NEURL4Q96JN8 1562 aa18.88■□□□□ 0.61
MSH2-206ENST00000543555 TMF1P82094 1093 aa18.88■□□□□ 0.61
MSH2-206ENST00000543555 PER1O15534 1290 aaPredicted RBP18.87■□□□□ 0.61
MSH2-206ENST00000543555 PARD3Q8TEW0 1356 aa18.87■□□□□ 0.61
MSH2-206ENST00000543555 IQGAP1P46940 1657 aa18.87■□□□□ 0.61
MSH2-206ENST00000543555 EFCAB6Q5THR3 1501 aa18.86■□□□□ 0.61
MSH2-206ENST00000543555 LRPPRCP42704 1394 aaKnown RBP18.85■□□□□ 0.61
MSH2-206ENST00000543555 IRX6P78412 446 aaPredicted RBP18.85■□□□□ 0.61
MSH2-206ENST00000543555 PLPPR3Q6T4P5 718 aa18.84■□□□□ 0.61
MSH2-206ENST00000543555 LMTK2Q8IWU2 1503 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 337 ms