RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 SAMD9LQ8IVG5 1584 aa13.41□□□□□ -0.26
CHD4-208ENST00000540960 ZC3H13Q5T200 1668 aaKnown RBP13.4□□□□□ -0.26
CHD4-208ENST00000540960 PHLPP1O60346 1717 aa13.4□□□□□ -0.26
CHD4-208ENST00000540960 RBM33Q96EV2 1170 aaKnown RBP13.4□□□□□ -0.26
CHD4-208ENST00000540960 JCADQ9P266 1359 aa13.39□□□□□ -0.27
CHD4-208ENST00000540960 PLXNC1O60486 1568 aa13.39□□□□□ -0.27
CHD4-208ENST00000540960 UGGT1Q9NYU2 1555 aa13.38□□□□□ -0.27
CHD4-208ENST00000540960 CDK12Q9NYV4 1490 aaPredicted RBP13.37□□□□□ -0.27
CHD4-208ENST00000540960 MEX3CQ5U5Q3 659 aaKnown RBP13.37□□□□□ -0.27
CHD4-208ENST00000540960 ATP1B4Q9UN42 357 aaPredicted RBP13.37□□□□□ -0.27
CHD4-208ENST00000540960 EEA1Q15075 1411 aa13.37□□□□□ -0.27
CHD4-208ENST00000540960 A2MP01023 1474 aa13.36□□□□□ -0.27
CHD4-208ENST00000540960 PREX2Q70Z35 1606 aa13.35□□□□□ -0.27
CHD4-208ENST00000540960 FAM135AQ9P2D6 1515 aa13.34□□□□□ -0.27
CHD4-208ENST00000540960 RGS12O14924 1447 aa13.34□□□□□ -0.27
CHD4-208ENST00000540960 IFFO2Q5TF58 517 aa13.34□□□□□ -0.27
CHD4-208ENST00000540960 SPAG9O60271 1321 aaKnown RBP13.34□□□□□ -0.27
CHD4-208ENST00000540960 TROQ12816 1431 aaPredicted RBP13.33□□□□□ -0.28
CHD4-208ENST00000540960 NUTM2BA6NNL0 878 aaPredicted RBP13.33□□□□□ -0.28
CHD4-208ENST00000540960 NUTM2EB1AL46 878 aaPredicted RBP13.33□□□□□ -0.28
CHD4-208ENST00000540960 NUTM2DQ5VT03 806 aaPredicted RBP13.33□□□□□ -0.28
CHD4-208ENST00000540960 NUTM2AQ8IVF1 878 aaPredicted RBP13.33□□□□□ -0.28
CHD4-208ENST00000540960 COL16A1Q07092 1604 aaPredicted RBP13.32□□□□□ -0.28
CHD4-208ENST00000540960 MIA2Q96PC5 1412 aa13.32□□□□□ -0.28
CHD4-208ENST00000540960 HNRNPMP52272 730 aaKnown RBP eCLIP13.32□□□□□ -0.28
CHD4-208ENST00000540960 TMEM94Q12767 1356 aa13.32□□□□□ -0.28
CHD4-208ENST00000540960 ATP7AQ04656 1500 aa13.31□□□□□ -0.28
CHD4-208ENST00000540960 PZPP20742 1482 aa13.3□□□□□ -0.28
CHD4-208ENST00000540960 NLRP1Q9C000 1473 aa13.29□□□□□ -0.28
CHD4-208ENST00000540960 MAP3K1Q13233 1512 aa13.29□□□□□ -0.28
CHD4-208ENST00000540960 ZNF777Q9ULD5 760 aaPredicted RBP13.29□□□□□ -0.28
CHD4-208ENST00000540960 CDK11AQ9UQ88 783 aaPredicted RBP13.29□□□□□ -0.28
CHD4-208ENST00000540960 CDC42BPAQ5VT25 1732 aa13.29□□□□□ -0.28
CHD4-208ENST00000540960 SPATA31A6Q5VVP1 1343 aa13.29□□□□□ -0.28
CHD4-208ENST00000540960 SYCP2Q9BX26 1530 aa13.29□□□□□ -0.28
CHD4-208ENST00000540960 KDM5DQ9BY66 1539 aa13.29□□□□□ -0.28
CHD4-208ENST00000540960 INO80Q9ULG1 1556 aaPredicted RBP13.28□□□□□ -0.28
CHD4-208ENST00000540960 LRRIQ1Q96JM4 1722 aa13.28□□□□□ -0.28
CHD4-208ENST00000540960 LTKP29376 864 aa13.28□□□□□ -0.28
CHD4-208ENST00000540960 AFF2P51816 1311 aa13.27□□□□□ -0.29
CHD4-208ENST00000540960 SLAIN2Q9P270 581 aa13.26□□□□□ -0.29
CHD4-208ENST00000540960 CLIP1P30622 1438 aa13.24□□□□□ -0.29
CHD4-208ENST00000540960 QTRT2Q9H974 415 aaKnown RBP13.24□□□□□ -0.29
CHD4-208ENST00000540960 LRRC9Q6ZRR7 1453 aa13.23□□□□□ -0.29
CHD4-208ENST00000540960 FOXD1Q16676 465 aa13.23□□□□□ -0.29
CHD4-208ENST00000540960 PROSER2Q86WR7 435 aaPredicted RBP13.23□□□□□ -0.29
CHD4-208ENST00000540960 SHPRHQ149N8 1683 aa13.23□□□□□ -0.29
CHD4-208ENST00000540960 ADGBQ8N7X0 1667 aa13.23□□□□□ -0.29
CHD4-208ENST00000540960 LRP5O75197 1615 aa13.23□□□□□ -0.29
CHD4-208ENST00000540960 SCAF11Q99590 1463 aaKnown RBP13.23□□□□□ -0.29
CHD4-208ENST00000540960 FGD6Q6ZV73 1430 aa13.22□□□□□ -0.29
CHD4-208ENST00000540960 ATAD2Q6PL18 1390 aa13.22□□□□□ -0.29
CHD4-208ENST00000540960 RBM6P78332 1123 aaKnown RBP13.22□□□□□ -0.29
CHD4-208ENST00000540960 TXNDC2Q86VQ3 553 aa13.21□□□□□ -0.29
CHD4-208ENST00000540960 UBR1Q8IWV7 1749 aa13.21□□□□□ -0.3
CHD4-208ENST00000540960 WASHC2CQ9Y4E1 1318 aa13.2□□□□□ -0.3
CHD4-208ENST00000540960 EP400Q96L91 3159 aa13.19□□□□□ -0.3
CHD4-208ENST00000540960 KIF3BO15066 747 aa13.19□□□□□ -0.3
CHD4-208ENST00000540960 CSRNP3Q8WYN3 585 aa13.19□□□□□ -0.3
CHD4-208ENST00000540960 CFAP65Q6ZU64 1925 aaKnown RBP13.19□□□□□ -0.3
CHD4-208ENST00000540960 KCNA6P17658 529 aa13.18□□□□□ -0.3
CHD4-208ENST00000540960 NCOA2Q15596 1464 aa13.17□□□□□ -0.3
CHD4-208ENST00000540960 TIAM1Q13009 1591 aa13.17□□□□□ -0.3
CHD4-208ENST00000540960 YY1P25490 414 aa13.16□□□□□ -0.3
CHD4-208ENST00000540960 PRDM15P57071 1507 aaPredicted RBP13.16□□□□□ -0.3
CHD4-208ENST00000540960 MSH6P52701 1360 aa13.16□□□□□ -0.3
CHD4-208ENST00000540960 ARHGAP23Q9P227 1491 aa13.16□□□□□ -0.3
CHD4-208ENST00000540960 C8orf37Q96NL8 207 aa13.15□□□□□ -0.3
CHD4-208ENST00000540960 DHX29Q7Z478 1369 aaKnown RBP13.15□□□□□ -0.3
CHD4-208ENST00000540960 DIP2AQ14689 1571 aa13.15□□□□□ -0.3
CHD4-208ENST00000540960 LOC105371045A0A1W2PR82 267 aa13.14□□□□□ -0.31
CHD4-208ENST00000540960 SLC26A8Q96RN1 970 aa13.13□□□□□ -0.31
CHD4-208ENST00000540960 AHDC1Q5TGY3 1603 aaPredicted RBP13.13□□□□□ -0.31
CHD4-208ENST00000540960 SLIT1O75093 1534 aa13.13□□□□□ -0.31
CHD4-208ENST00000540960 GPATCH8Q9UKJ3 1502 aaKnown RBP13.13□□□□□ -0.31
CHD4-208ENST00000540960 FMN1Q68DA7 1419 aa13.12□□□□□ -0.31
CHD4-208ENST00000540960 KIAA1107Q9UPP5 1409 aa13.12□□□□□ -0.31
CHD4-208ENST00000540960 DEFB132Q7Z7B7 95 aa13.11□□□□□ -0.31
CHD4-208ENST00000540960 KDM5AP29375 1690 aaKnown RBP13.11□□□□□ -0.31
CHD4-208ENST00000540960 PSDA5PKW4 1024 aaPredicted RBP13.1□□□□□ -0.31
CHD4-208ENST00000540960 CCDC125Q86Z20 511 aa13.1□□□□□ -0.31
CHD4-208ENST00000540960 NGLY1Q96IV0 654 aa13.1□□□□□ -0.31
CHD4-208ENST00000540960 ERVK-7P63135 1459 aa13.1□□□□□ -0.31
CHD4-208ENST00000540960 EID1Q9Y6B2 187 aa13.08□□□□□ -0.32
CHD4-208ENST00000540960 TET3O43151 1660 aa13.08□□□□□ -0.32
CHD4-208ENST00000540960 ZNF644Q9H582 1327 aaPredicted RBP13.08□□□□□ -0.32
CHD4-208ENST00000540960 HRCP23327 699 aa13.07□□□□□ -0.32
CHD4-208ENST00000540960 NWD1Q149M9 1564 aa13.07□□□□□ -0.32
CHD4-208ENST00000540960 MAST1Q9Y2H9 1570 aa13.07□□□□□ -0.32
CHD4-208ENST00000540960 NKTRP30414 1462 aaKnown RBP13.06□□□□□ -0.32
CHD4-208ENST00000540960 NHSL1Q5SYE7 1610 aa13.06□□□□□ -0.32
CHD4-208ENST00000540960 ARHGAP35Q9NRY4 1499 aa13.05□□□□□ -0.32
CHD4-208ENST00000540960 ABCC3O15438 1527 aa13.05□□□□□ -0.32
CHD4-208ENST00000540960 CFDP1Q9UEE9 299 aaPredicted RBP13.05□□□□□ -0.32
CHD4-208ENST00000540960 PLEKHH2Q8IVE3 1493 aa13.04□□□□□ -0.32
CHD4-208ENST00000540960 TMEM2Q9UHN6 1383 aa13.04□□□□□ -0.32
CHD4-208ENST00000540960 MBD5Q9P267 1494 aa13.04□□□□□ -0.32
CHD4-208ENST00000540960 SENP3-EIF4A1A0A087X0R7 540 aa13.03□□□□□ -0.32
CHD4-208ENST00000540960 ADAMTS2O95450 1211 aa13.03□□□□□ -0.32
CHD4-208ENST00000540960 BRINP3Q76B58 766 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms