RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 PZPP20742 1482 aa11.89□□□□□ -0.51
YBX3-209ENST00000540747 CCDC141Q6ZP82 1450 aa11.88□□□□□ -0.51
YBX3-209ENST00000540747 KDM5DQ9BY66 1539 aa11.87□□□□□ -0.51
YBX3-209ENST00000540747 UBAP1LF5GYI3 381 aa11.86□□□□□ -0.51
YBX3-209ENST00000540747 TNRQ92752 1358 aa11.86□□□□□ -0.51
YBX3-209ENST00000540747 CAMSAP2Q08AD1 1489 aa11.86□□□□□ -0.51
YBX3-209ENST00000540747 NCOA2Q15596 1464 aa11.85□□□□□ -0.51
YBX3-209ENST00000540747 CPS1P31327 1500 aa11.85□□□□□ -0.51
YBX3-209ENST00000540747 ARHGEF5Q12774 1597 aa11.84□□□□□ -0.51
YBX3-209ENST00000540747 VWDEQ8N2E2 1590 aa11.84□□□□□ -0.51
YBX3-209ENST00000540747 POLR1AO95602 1720 aaPredicted RBP11.84□□□□□ -0.51
YBX3-209ENST00000540747 FBXO31Q5XUX0 539 aaPredicted RBP11.84□□□□□ -0.51
YBX3-209ENST00000540747 MED14O60244 1454 aa11.83□□□□□ -0.52
YBX3-209ENST00000540747 SHANK2Q9UPX8 1470 aa11.83□□□□□ -0.52
YBX3-209ENST00000540747 ALKQ9UM73 1620 aa11.83□□□□□ -0.52
YBX3-209ENST00000540747 MIA2Q96PC5 1412 aa11.83□□□□□ -0.52
YBX3-209ENST00000540747 NLRP1Q9C000 1473 aa11.83□□□□□ -0.52
YBX3-209ENST00000540747 KIF3BO15066 747 aa11.82□□□□□ -0.52
YBX3-209ENST00000540747 DEPDC5O75140 1603 aa11.82□□□□□ -0.52
YBX3-209ENST00000540747 RNF17Q9BXT8 1623 aaKnown RBP11.82□□□□□ -0.52
YBX3-209ENST00000540747 RSPH4AQ5TD94 716 aa11.81□□□□□ -0.52
YBX3-209ENST00000540747 ABCC3O15438 1527 aa11.8□□□□□ -0.52
YBX3-209ENST00000540747 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.79□□□□□ -0.52
YBX3-209ENST00000540747 MAST1Q9Y2H9 1570 aa11.79□□□□□ -0.52
YBX3-209ENST00000540747 MED1Q15648 1581 aaPredicted RBP11.79□□□□□ -0.52
YBX3-209ENST00000540747 UGGT1Q9NYU2 1555 aa11.79□□□□□ -0.52
YBX3-209ENST00000540747 MROH1Q8NDA8 1641 aa11.78□□□□□ -0.52
YBX3-209ENST00000540747 NPHP4O75161 1426 aaPredicted RBP11.78□□□□□ -0.52
YBX3-209ENST00000540747 HSPA1LP34931 641 aa11.78□□□□□ -0.52
YBX3-209ENST00000540747 WASHC2CQ9Y4E1 1318 aa11.78□□□□□ -0.52
YBX3-209ENST00000540747 ANKLE2Q86XL3 938 aa11.77□□□□□ -0.53
YBX3-209ENST00000540747 ERVK-7P63135 1459 aa11.76□□□□□ -0.53
YBX3-209ENST00000540747 EIF2AK4Q9P2K8 1649 aaKnown RBP11.76□□□□□ -0.53
YBX3-209ENST00000540747 ZC3H13Q5T200 1668 aaKnown RBP11.76□□□□□ -0.53
YBX3-209ENST00000540747 THEMISQ8N1K5 641 aaPredicted RBP11.76□□□□□ -0.53
YBX3-209ENST00000540747 LRRC9Q6ZRR7 1453 aa11.76□□□□□ -0.53
YBX3-209ENST00000540747 IQGAP1P46940 1657 aa11.75□□□□□ -0.53
YBX3-209ENST00000540747 TOM1O60784 492 aa11.75□□□□□ -0.53
YBX3-209ENST00000540747 STRCP1A6NGW2 1772 aa11.74□□□□□ -0.53
YBX3-209ENST00000540747 LRRC7Q96NW7 1537 aa11.74□□□□□ -0.53
YBX3-209ENST00000540747 MAP3K1Q13233 1512 aa11.73□□□□□ -0.53
YBX3-209ENST00000540747 VPS8Q8N3P4 1428 aa11.73□□□□□ -0.53
YBX3-209ENST00000540747 SYNMO15061 1565 aa11.72□□□□□ -0.53
YBX3-209ENST00000540747 ARHGAP23Q9P227 1491 aa11.72□□□□□ -0.53
YBX3-209ENST00000540747 TSPY4P0CV99 314 aa11.72□□□□□ -0.53
YBX3-209ENST00000540747 TSPY10P0CW01 314 aa11.72□□□□□ -0.53
YBX3-209ENST00000540747 PIP4K2BP78356 416 aa11.72□□□□□ -0.53
YBX3-209ENST00000540747 ARHGAP31Q2M1Z3 1444 aa11.71□□□□□ -0.53
YBX3-209ENST00000540747 UBR1Q8IWV7 1749 aa11.71□□□□□ -0.54
YBX3-209ENST00000540747 SLIT1O75093 1534 aa11.7□□□□□ -0.54
YBX3-209ENST00000540747 PRDM15P57071 1507 aaPredicted RBP11.7□□□□□ -0.54
YBX3-209ENST00000540747 MYOM3Q5VTT5 1437 aa11.7□□□□□ -0.54
YBX3-209ENST00000540747 DUOX2Q9NRD8 1548 aa11.7□□□□□ -0.54
YBX3-209ENST00000540747 SCAF11Q99590 1463 aaKnown RBP11.7□□□□□ -0.54
YBX3-209ENST00000540747 KANK4Q5T7N3 995 aaPredicted RBP11.69□□□□□ -0.54
YBX3-209ENST00000540747 CEP152O94986 1710 aa11.69□□□□□ -0.54
YBX3-209ENST00000540747 SCAF1Q9H7N4 1312 aaKnown RBP11.68□□□□□ -0.54
YBX3-209ENST00000540747 LTKP29376 864 aa11.67□□□□□ -0.54
YBX3-209ENST00000540747 ERBINQ96RT1 1412 aa11.67□□□□□ -0.54
YBX3-209ENST00000540747 ABCC5O15440 1437 aa11.66□□□□□ -0.54
YBX3-209ENST00000540747 KIF15Q9NS87 1388 aa11.66□□□□□ -0.54
YBX3-209ENST00000540747 CROCC2H7BZ55 1655 aa11.65□□□□□ -0.54
YBX3-209ENST00000540747 XIRP1Q702N8 1843 aaKnown RBP11.65□□□□□ -0.55
YBX3-209ENST00000540747 LMTK2Q8IWU2 1503 aa11.64□□□□□ -0.55
YBX3-209ENST00000540747 TMEM2Q9UHN6 1383 aa11.63□□□□□ -0.55
YBX3-209ENST00000540747 KDM5AP29375 1690 aaKnown RBP11.62□□□□□ -0.55
YBX3-209ENST00000540747 PIK3C2BO00750 1634 aa11.62□□□□□ -0.55
YBX3-209ENST00000540747 TXNDC2Q86VQ3 553 aa11.61□□□□□ -0.55
YBX3-209ENST00000540747 RGS17Q9UGC6 210 aaPredicted RBP11.61□□□□□ -0.55
YBX3-209ENST00000540747 TET3O43151 1660 aa11.61□□□□□ -0.55
YBX3-209ENST00000540747 DAPK1P53355 1430 aa11.6□□□□□ -0.55
YBX3-209ENST00000540747 FAM135BQ49AJ0 1406 aa11.6□□□□□ -0.55
YBX3-209ENST00000540747 PTPN23Q9H3S7 1636 aa11.6□□□□□ -0.55
YBX3-209ENST00000540747 CFAP65Q6ZU64 1925 aaKnown RBP11.6□□□□□ -0.55
YBX3-209ENST00000540747 NOS1P29475 1434 aa11.6□□□□□ -0.55
YBX3-209ENST00000540747 LOC105371045A0A1W2PR82 267 aa11.59□□□□□ -0.55
YBX3-209ENST00000540747 EFCAB6Q5THR3 1501 aa11.59□□□□□ -0.55
YBX3-209ENST00000540747 FGD6Q6ZV73 1430 aa11.59□□□□□ -0.55
YBX3-209ENST00000540747 PHF23Q9BUL5 403 aaPredicted RBP11.58□□□□□ -0.56
YBX3-209ENST00000540747 RRP7BPQ9NSQ0 103 aa11.58□□□□□ -0.56
YBX3-209ENST00000540747 NWD1Q149M9 1564 aa11.58□□□□□ -0.56
YBX3-209ENST00000540747 TMEM94Q12767 1356 aa11.57□□□□□ -0.56
YBX3-209ENST00000540747 IDI1Q13907 227 aa11.57□□□□□ -0.56
YBX3-209ENST00000540747 ADGRB3O60242 1522 aa11.56□□□□□ -0.56
YBX3-209ENST00000540747 KCNA6P17658 529 aa11.56□□□□□ -0.56
YBX3-209ENST00000540747 EID1Q9Y6B2 187 aa11.56□□□□□ -0.56
YBX3-209ENST00000540747 ADGRL2O95490 1459 aa11.56□□□□□ -0.56
YBX3-209ENST00000540747 NKTRP30414 1462 aaKnown RBP11.56□□□□□ -0.56
YBX3-209ENST00000540747 KANK1Q14678 1352 aa11.54□□□□□ -0.56
YBX3-209ENST00000540747 ANKRD30AQ9BXX3 1397 aa11.54□□□□□ -0.56
YBX3-209ENST00000540747 ZFYVE9O95405 1425 aa11.54□□□□□ -0.56
YBX3-209ENST00000540747 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.53□□□□□ -0.56
YBX3-209ENST00000540747 SENP3Q9H4L4 574 aaPredicted RBP11.53□□□□□ -0.56
YBX3-209ENST00000540747 ROBO1Q9Y6N7 1651 aa11.52□□□□□ -0.56
YBX3-209ENST00000540747 RPRD2Q5VT52 1461 aaKnown RBP11.52□□□□□ -0.56
YBX3-209ENST00000540747 SLC26A8Q96RN1 970 aa11.51□□□□□ -0.57
YBX3-209ENST00000540747 SLC52A1Q9NWF4 448 aa11.51□□□□□ -0.57
YBX3-209ENST00000540747 POTEAQ6S8J7 498 aa11.5□□□□□ -0.57
YBX3-209ENST00000540747 PLEKHG1Q9ULL1 1385 aa11.5□□□□□ -0.57
YBX3-209ENST00000540747 PROSER2Q86WR7 435 aaPredicted RBP11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms