RNA–Protein interactions for RNA: ENST00000540663.5

SYNE1-238, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 776 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-238ENST00000540663 KDM5DQ9BY66 1539 aa18.28■□□□□ 0.52
SYNE1-238ENST00000540663 RNF17Q9BXT8 1623 aaKnown RBP18.28■□□□□ 0.52
SYNE1-238ENST00000540663 HSPA2P54652 639 aa18.27■□□□□ 0.52
SYNE1-238ENST00000540663 KIF15Q9NS87 1388 aa18.27■□□□□ 0.51
SYNE1-238ENST00000540663 PTPRKQ15262 1439 aa18.25■□□□□ 0.51
SYNE1-238ENST00000540663 ERBINQ96RT1 1412 aa18.24■□□□□ 0.51
SYNE1-238ENST00000540663 ANKRD30AQ9BXX3 1397 aa18.24■□□□□ 0.51
SYNE1-238ENST00000540663 WASHC2CQ9Y4E1 1318 aa18.23■□□□□ 0.51
SYNE1-238ENST00000540663 ZC3H13Q5T200 1668 aaKnown RBP18.22■□□□□ 0.51
SYNE1-238ENST00000540663 FAM50AQ14320 339 aaKnown RBP18.22■□□□□ 0.51
SYNE1-238ENST00000540663 ADGRL2O95490 1459 aa18.21■□□□□ 0.51
SYNE1-238ENST00000540663 PZPP20742 1482 aa18.21■□□□□ 0.51
SYNE1-238ENST00000540663 RRP7BPQ9NSQ0 103 aa18.2■□□□□ 0.5
SYNE1-238ENST00000540663 NCOA1Q15788 1441 aa18.2■□□□□ 0.5
SYNE1-238ENST00000540663 ABCC3O15438 1527 aa18.19■□□□□ 0.5
SYNE1-238ENST00000540663 MROH1Q8NDA8 1641 aa18.19■□□□□ 0.5
SYNE1-238ENST00000540663 MYO3AQ8NEV4 1616 aa18.19■□□□□ 0.5
SYNE1-238ENST00000540663 ZNF142P52746 1687 aaPredicted RBP18.18■□□□□ 0.5
SYNE1-238ENST00000540663 PRDM15P57071 1507 aaPredicted RBP18.18■□□□□ 0.5
SYNE1-238ENST00000540663 CHIC2Q9UKJ5 165 aa18.17■□□□□ 0.5
SYNE1-238ENST00000540663 DMRT2Q9Y5R5 561 aa18.17■□□□□ 0.5
SYNE1-238ENST00000540663 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.17■□□□□ 0.5
SYNE1-238ENST00000540663 TNRQ92752 1358 aa18.16■□□□□ 0.5
SYNE1-238ENST00000540663 CEP170BQ9Y4F5 1589 aaPredicted RBP18.15■□□□□ 0.5
SYNE1-238ENST00000540663 DEPDC5O75140 1603 aa18.15■□□□□ 0.5
SYNE1-238ENST00000540663 STRCQ7RTU9 1775 aa18.14■□□□□ 0.49
SYNE1-238ENST00000540663 A2ML1A8K2U0 1454 aa18.14■□□□□ 0.49
SYNE1-238ENST00000540663 KANK1Q14678 1352 aa18.13■□□□□ 0.49
SYNE1-238ENST00000540663 CAMSAP1Q5T5Y3 1602 aa18.12■□□□□ 0.49
SYNE1-238ENST00000540663 FBXO31Q5XUX0 539 aaPredicted RBP18.11■□□□□ 0.49
SYNE1-238ENST00000540663 ROCK1Q13464 1354 aa18.11■□□□□ 0.49
SYNE1-238ENST00000540663 PTPRTO14522 1441 aa18.11■□□□□ 0.49
SYNE1-238ENST00000540663 PLA2R1Q13018 1463 aa18.11■□□□□ 0.49
SYNE1-238ENST00000540663 NLRP1Q9C000 1473 aa18.11■□□□□ 0.49
SYNE1-238ENST00000540663 CEP152O94986 1710 aa18.1■□□□□ 0.49
SYNE1-238ENST00000540663 ARHGAP31Q2M1Z3 1444 aa18.1■□□□□ 0.49
SYNE1-238ENST00000540663 PPARGC1BQ86YN6 1023 aaKnown RBP18.1■□□□□ 0.49
SYNE1-238ENST00000540663 SPATA31D1Q6ZQQ2 1576 aa18.09■□□□□ 0.49
SYNE1-238ENST00000540663 ANKRD50Q9ULJ7 1429 aa18.09■□□□□ 0.49
SYNE1-238ENST00000540663 VWDEQ8N2E2 1590 aa18.08■□□□□ 0.49
SYNE1-238ENST00000540663 LMTK2Q8IWU2 1503 aa18.08■□□□□ 0.49
SYNE1-238ENST00000540663 ERVK-7P63135 1459 aa18.08■□□□□ 0.49
SYNE1-238ENST00000540663 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.07■□□□□ 0.48
SYNE1-238ENST00000540663 RRBP1Q9P2E9 1410 aaKnown RBP18.06■□□□□ 0.48
SYNE1-238ENST00000540663 PKD2Q13563 968 aa18.06■□□□□ 0.48
SYNE1-238ENST00000540663 THEMISQ8N1K5 641 aaPredicted RBP18.02■□□□□ 0.48
SYNE1-238ENST00000540663 UGGT1Q9NYU2 1555 aa18.02■□□□□ 0.48
SYNE1-238ENST00000540663 EFCAB6Q5THR3 1501 aa18.01■□□□□ 0.47
SYNE1-238ENST00000540663 UNC13BO14795 1591 aa18■□□□□ 0.47
SYNE1-238ENST00000540663 NCKAP5LQ9HCH0 1330 aa17.99■□□□□ 0.47
SYNE1-238ENST00000540663 ITGAEP38570 1179 aa17.99■□□□□ 0.47
SYNE1-238ENST00000540663 ILDR1Q86SU0 546 aaPredicted RBP17.98■□□□□ 0.47
SYNE1-238ENST00000540663 RPRD2Q5VT52 1461 aaKnown RBP17.98■□□□□ 0.47
SYNE1-238ENST00000540663 FBXO41Q8TF61 875 aa17.97■□□□□ 0.47
SYNE1-238ENST00000540663 POLR1AO95602 1720 aaPredicted RBP17.97■□□□□ 0.47
SYNE1-238ENST00000540663 TET3O43151 1660 aa17.96■□□□□ 0.47
SYNE1-238ENST00000540663 CERKQ8TCT0 537 aa17.96■□□□□ 0.47
SYNE1-238ENST00000540663 CFAP65Q6ZU64 1925 aaKnown RBP17.96■□□□□ 0.47
SYNE1-238ENST00000540663 ANKLE2Q86XL3 938 aa17.95■□□□□ 0.46
SYNE1-238ENST00000540663 NOS1P29475 1434 aa17.94■□□□□ 0.46
SYNE1-238ENST00000540663 UBR1Q8IWV7 1749 aa17.94■□□□□ 0.46
SYNE1-238ENST00000540663 GCC2Q8IWJ2 1684 aa17.93■□□□□ 0.46
SYNE1-238ENST00000540663 NEURL4Q96JN8 1562 aa17.93■□□□□ 0.46
SYNE1-238ENST00000540663 IQGAP3Q86VI3 1631 aa17.93■□□□□ 0.46
SYNE1-238ENST00000540663 MED14O60244 1454 aa17.92■□□□□ 0.46
SYNE1-238ENST00000540663 KDM5AP29375 1690 aaKnown RBP17.92■□□□□ 0.46
SYNE1-238ENST00000540663 SYNMO15061 1565 aa17.91■□□□□ 0.46
SYNE1-238ENST00000540663 LTBP4Q8N2S1 1624 aa17.9■□□□□ 0.46
SYNE1-238ENST00000540663 SLC52A1Q9NWF4 448 aa17.9■□□□□ 0.46
SYNE1-238ENST00000540663 PIK3C2BO00750 1634 aa17.9■□□□□ 0.46
SYNE1-238ENST00000540663 NUP155O75694 1391 aa17.9■□□□□ 0.46
SYNE1-238ENST00000540663 ARHGAP23Q9P227 1491 aa17.89■□□□□ 0.45
SYNE1-238ENST00000540663 SLIT1O75093 1534 aa17.89■□□□□ 0.45
SYNE1-238ENST00000540663 NPHP4O75161 1426 aaPredicted RBP17.89■□□□□ 0.45
SYNE1-238ENST00000540663 IQSEC2Q5JU85 1478 aa17.88■□□□□ 0.45
SYNE1-238ENST00000540663 NAIPQ13075 1403 aa17.88■□□□□ 0.45
SYNE1-238ENST00000540663 IDI1Q13907 227 aa17.87■□□□□ 0.45
SYNE1-238ENST00000540663 HFM1A2PYH4 1435 aa17.87■□□□□ 0.45
SYNE1-238ENST00000540663 SCAF11Q99590 1463 aaKnown RBP17.87■□□□□ 0.45
SYNE1-238ENST00000540663 STAG3Q9UJ98 1225 aa17.86■□□□□ 0.45
SYNE1-238ENST00000540663 ADGRB3O60242 1522 aa17.86■□□□□ 0.45
SYNE1-238ENST00000540663 IQGAP1P46940 1657 aa17.86■□□□□ 0.45
SYNE1-238ENST00000540663 E9PCH4 1651 aa17.85■□□□□ 0.45
SYNE1-238ENST00000540663 ZNF335Q9H4Z2 1342 aaPredicted RBP17.85■□□□□ 0.45
SYNE1-238ENST00000540663 TMEM2Q9UHN6 1383 aa17.84■□□□□ 0.45
SYNE1-238ENST00000540663 EID1Q9Y6B2 187 aa17.84■□□□□ 0.45
SYNE1-238ENST00000540663 TXNDC2Q86VQ3 553 aa17.81■□□□□ 0.44
SYNE1-238ENST00000540663 CPS1P31327 1500 aa17.81■□□□□ 0.44
SYNE1-238ENST00000540663 LTKP29376 864 aa17.79■□□□□ 0.44
SYNE1-238ENST00000540663 TMEM131LA2VDJ0 1609 aa17.76■□□□□ 0.43
SYNE1-238ENST00000540663 SPHKAPQ2M3C7 1700 aa17.75■□□□□ 0.43
SYNE1-238ENST00000540663 ZFYVE9O95405 1425 aa17.74■□□□□ 0.43
SYNE1-238ENST00000540663 HDGFP51858 240 aaKnown RBP17.74■□□□□ 0.43
SYNE1-238ENST00000540663 ACIN1Q9UKV3 1341 aaKnown RBP17.72■□□□□ 0.43
SYNE1-238ENST00000540663 TRIM52Q96A61 297 aa17.72■□□□□ 0.43
SYNE1-238ENST00000540663 MYO5BQ9ULV0 1848 aa17.72■□□□□ 0.43
SYNE1-238ENST00000540663 RIMS2Q9UQ26 1411 aa17.72■□□□□ 0.43
SYNE1-238ENST00000540663 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.71■□□□□ 0.43
SYNE1-238ENST00000540663 TRPM2O94759 1503 aa17.71■□□□□ 0.43
SYNE1-238ENST00000540663 CHGAP10645 457 aaKnown RBP17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms