RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 OS9Q13438 667 aaPredicted RBP10.76□□□□□ -0.69
YBX3-208ENST00000540447 NOL8Q76FK4 1167 aaKnown RBP10.76□□□□□ -0.69
YBX3-208ENST00000540447 CDCA8Q53HL2 280 aa10.76□□□□□ -0.69
YBX3-208ENST00000540447 CHGAP10645 457 aaKnown RBP10.75□□□□□ -0.69
YBX3-208ENST00000540447 GTF2A1P52655 376 aaPredicted RBP10.75□□□□□ -0.69
YBX3-208ENST00000540447 RRP1P56182 461 aaKnown RBP10.75□□□□□ -0.69
YBX3-208ENST00000540447 PDE3BQ13370 1112 aa10.75□□□□□ -0.69
YBX3-208ENST00000540447 CDR1P51861 262 aa10.75□□□□□ -0.69
YBX3-208ENST00000540447 HSPA5P11021 654 aaKnown RBP10.74□□□□□ -0.69
YBX3-208ENST00000540447 ZNF526Q8TF50 670 aaPredicted RBP10.74□□□□□ -0.69
YBX3-208ENST00000540447 HMMRO75330 724 aa10.74□□□□□ -0.69
YBX3-208ENST00000540447 MCTP1Q6DN14 999 aa10.74□□□□□ -0.69
YBX3-208ENST00000540447 HSP90B1P14625 803 aaKnown RBP10.74□□□□□ -0.69
YBX3-208ENST00000540447 TRERF1Q96PN7 1200 aa10.74□□□□□ -0.69
YBX3-208ENST00000540447 ATP6V1DQ9Y5K8 247 aa10.74□□□□□ -0.69
YBX3-208ENST00000540447 DCTN1Q14203 1278 aa10.74□□□□□ -0.69
YBX3-208ENST00000540447 IPO4Q8TEX9 1081 aaKnown RBP10.74□□□□□ -0.69
YBX3-208ENST00000540447 FOXD4L6Q3SYB3 417 aaPredicted RBP10.73□□□□□ -0.69
YBX3-208ENST00000540447 MEX3CQ5U5Q3 659 aaKnown RBP10.73□□□□□ -0.69
YBX3-208ENST00000540447 FOXD4L3Q6VB84 417 aaPredicted RBP10.73□□□□□ -0.69
YBX3-208ENST00000540447 ZSCAN30Q86W11 494 aa10.73□□□□□ -0.69
YBX3-208ENST00000540447 DYDC1Q8WWB3 177 aa10.73□□□□□ -0.69
YBX3-208ENST00000540447 ERCC4Q92889 916 aaPredicted RBP10.73□□□□□ -0.69
YBX3-208ENST00000540447 RSPH4AQ5TD94 716 aa10.73□□□□□ -0.69
YBX3-208ENST00000540447 TIGD1Q96MW7 591 aa10.73□□□□□ -0.69
YBX3-208ENST00000540447 ITPRIPQ8IWB1 547 aa10.73□□□□□ -0.69
YBX3-208ENST00000540447 LETM1O95202 739 aaPredicted RBP10.73□□□□□ -0.69
YBX3-208ENST00000540447 RRP7BPQ9NSQ0 103 aa10.73□□□□□ -0.69
YBX3-208ENST00000540447 KIAA0754O94854 1291 aa10.73□□□□□ -0.69
YBX3-208ENST00000540447 ZBED9Q6R2W3 1325 aa10.73□□□□□ -0.69
YBX3-208ENST00000540447 RNF214Q8ND24 703 aa10.72□□□□□ -0.69
YBX3-208ENST00000540447 IPO8O15397 1037 aaKnown RBP10.72□□□□□ -0.69
YBX3-208ENST00000540447 C14orf37Q86TY3 774 aa10.72□□□□□ -0.69
YBX3-208ENST00000540447 APBB1O00213 710 aa10.72□□□□□ -0.69
YBX3-208ENST00000540447 SASS6Q6UVJ0 657 aa10.72□□□□□ -0.69
YBX3-208ENST00000540447 NUCB2P80303 420 aa10.71□□□□□ -0.69
YBX3-208ENST00000540447 CRBNQ96SW2 442 aa10.71□□□□□ -0.69
YBX3-208ENST00000540447 CCDC34Q96HJ3 373 aa10.71□□□□□ -0.69
YBX3-208ENST00000540447 SKIDA1Q1XH10 827 aa10.71□□□□□ -0.7
YBX3-208ENST00000540447 NPHP1O15259 732 aa10.7□□□□□ -0.7
YBX3-208ENST00000540447 CCDC112Q8NEF3 446 aa10.7□□□□□ -0.7
YBX3-208ENST00000540447 KTN1Q86UP2 1357 aaKnown RBP10.7□□□□□ -0.7
YBX3-208ENST00000540447 TPM1P09493 284 aa10.69□□□□□ -0.7
YBX3-208ENST00000540447 TSR1Q2NL82 804 aaKnown RBP10.69□□□□□ -0.7
YBX3-208ENST00000540447 CAVIN1Q6NZI2 390 aaKnown RBP10.69□□□□□ -0.7
YBX3-208ENST00000540447 CREBRFQ8IUR6 639 aa10.69□□□□□ -0.7
YBX3-208ENST00000540447 PLIN1O60240 522 aa10.68□□□□□ -0.7
YBX3-208ENST00000540447 BAZ1BQ9UIG0 1483 aaKnown RBP10.68□□□□□ -0.7
YBX3-208ENST00000540447 GORABQ5T7V8 394 aa10.68□□□□□ -0.7
YBX3-208ENST00000540447 RALBP1Q15311 655 aa10.68□□□□□ -0.7
YBX3-208ENST00000540447 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.68□□□□□ -0.71e-9■■□□□ 14.4
YBX3-208ENST00000540447 GTPBP4Q9BZE4 634 aaKnown RBP10.68□□□□□ -0.7
YBX3-208ENST00000540447 TSPY26PQ9H489 355 aa10.67□□□□□ -0.7
YBX3-208ENST00000540447 PPP4R3BQ5MIZ7 849 aa10.67□□□□□ -0.7
YBX3-208ENST00000540447 SSR1P43307 286 aaKnown RBP10.67□□□□□ -0.7
YBX3-208ENST00000540447 GOLGA2Q08379 1002 aa10.67□□□□□ -0.7
YBX3-208ENST00000540447 AXDND1Q5T1B0 1012 aaPredicted RBP10.67□□□□□ -0.7
YBX3-208ENST00000540447 WWC1Q8IX03 1113 aa10.66□□□□□ -0.7
YBX3-208ENST00000540447 DYNC1I1O14576 645 aa10.66□□□□□ -0.7
YBX3-208ENST00000540447 SF3A1Q15459 793 aaKnown RBP10.66□□□□□ -0.7
YBX3-208ENST00000540447 CENPHQ9H3R5 247 aa10.66□□□□□ -0.7
YBX3-208ENST00000540447 MTUS2Q5JR59 1369 aa10.65□□□□□ -0.7
YBX3-208ENST00000540447 LMOD3Q0VAK6 560 aa10.65□□□□□ -0.7
YBX3-208ENST00000540447 SMAP1Q8IYB5 467 aaPredicted RBP10.65□□□□□ -0.7
YBX3-208ENST00000540447 CLCN1P35523 988 aa10.65□□□□□ -0.71
YBX3-208ENST00000540447 TDO2P48775 406 aa10.65□□□□□ -0.71
YBX3-208ENST00000540447 NBPF1Q3BBV0 1214 aa10.65□□□□□ -0.71
YBX3-208ENST00000540447 INCENPQ9NQS7 918 aa10.65□□□□□ -0.71
YBX3-208ENST00000540447 EIF3JO75822 258 aaKnown RBP10.64□□□□□ -0.71
YBX3-208ENST00000540447 C22orf23Q9BZE7 217 aa10.64□□□□□ -0.71
YBX3-208ENST00000540447 VGLL3A8MV65 326 aa10.64□□□□□ -0.71
YBX3-208ENST00000540447 POGKQ9P215 609 aa10.64□□□□□ -0.71
YBX3-208ENST00000540447 CLGNO14967 610 aa10.64□□□□□ -0.71
YBX3-208ENST00000540447 CENPJQ9HC77 1338 aaPredicted RBP10.63□□□□□ -0.71
YBX3-208ENST00000540447 TRIM6-TRIM34B2RNG4 842 aa10.63□□□□□ -0.71
YBX3-208ENST00000540447 SPDYE4A6NLX3 237 aa10.63□□□□□ -0.71
YBX3-208ENST00000540447 CT47A1Q5JQC4 288 aaPredicted RBP10.63□□□□□ -0.71
YBX3-208ENST00000540447 CLUAP1Q96AJ1 413 aa10.63□□□□□ -0.71
YBX3-208ENST00000540447 CHMP3Q9Y3E7 222 aa10.63□□□□□ -0.71
YBX3-208ENST00000540447 CT47B1P0C2W7 299 aaPredicted RBP10.63□□□□□ -0.71
YBX3-208ENST00000540447 GTF2F1P35269 517 aaKnown RBP eCLIP10.63□□□□□ -0.71
YBX3-208ENST00000540447 MBD3O95983 291 aa10.63□□□□□ -0.71
YBX3-208ENST00000540447 TICAM2Q86XR7 235 aa10.63□□□□□ -0.71
YBX3-208ENST00000540447 BACH2Q9BYV9 841 aa10.63□□□□□ -0.71
YBX3-208ENST00000540447 IPO7O95373 1038 aaKnown RBP10.62□□□□□ -0.71
YBX3-208ENST00000540447 GOLGA6L7A0A1B0GV03 622 aa10.62□□□□□ -0.71
YBX3-208ENST00000540447 PES1O00541 588 aaKnown RBP10.62□□□□□ -0.71
YBX3-208ENST00000540447 RGL3Q3MIN7 710 aa10.62□□□□□ -0.71
YBX3-208ENST00000540447 TRIM5Q9C035 493 aa10.62□□□□□ -0.71
YBX3-208ENST00000540447 RNF20Q5VTR2 975 aa10.62□□□□□ -0.71
YBX3-208ENST00000540447 TTLL5Q6EMB2 1281 aa10.62□□□□□ -0.71
YBX3-208ENST00000540447 CCP110O43303 1012 aa10.62□□□□□ -0.71
YBX3-208ENST00000540447 DDX11Q96FC9 970 aa10.62□□□□□ -0.71
YBX3-208ENST00000540447 H3BQV1 296 aa10.61□□□□□ -0.71
YBX3-208ENST00000540447 XPCQ01831 940 aaPredicted RBP10.61□□□□□ -0.71
YBX3-208ENST00000540447 IFFO2Q5TF58 517 aa10.61□□□□□ -0.71
YBX3-208ENST00000540447 SPC24Q8NBT2 197 aa10.61□□□□□ -0.71
YBX3-208ENST00000540447 MCM4P33991 863 aa10.61□□□□□ -0.71
YBX3-208ENST00000540447 DHX37Q8IY37 1157 aaKnown RBP10.61□□□□□ -0.71
YBX3-208ENST00000540447 ZRSR2Q15696 482 aaKnown RBP10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms