RNA–Protein interactions for RNA: ENST00000539941.6

COPS3-212, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2 BASIC

Gene COPS3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-212ENST00000539941 FAM135AQ9P2D6 1515 aa24.36■■□□□ 1.49
COPS3-212ENST00000539941 IQGAP3Q86VI3 1631 aa24.36■■□□□ 1.49
COPS3-212ENST00000539941 HECW2Q9P2P5 1572 aa24.35■■□□□ 1.49
COPS3-212ENST00000539941 EIF2AK4Q9P2K8 1649 aaKnown RBP24.34■■□□□ 1.49
COPS3-212ENST00000539941 PKD2Q13563 968 aa24.34■■□□□ 1.49
COPS3-212ENST00000539941 RPRD2Q5VT52 1461 aaKnown RBP24.33■■□□□ 1.48
COPS3-212ENST00000539941 RAPGEF3O95398 923 aa24.32■■□□□ 1.48
COPS3-212ENST00000539941 FOXD1Q16676 465 aa24.32■■□□□ 1.48
COPS3-212ENST00000539941 DHX29Q7Z478 1369 aaKnown RBP24.32■■□□□ 1.48
COPS3-212ENST00000539941 DEPDC5O75140 1603 aa24.31■■□□□ 1.48
COPS3-212ENST00000539941 ZNF316A6NFI3 1004 aaPredicted RBP24.3■■□□□ 1.48
COPS3-212ENST00000539941 PPP1R15AO75807 674 aaPredicted RBP24.3■■□□□ 1.48
COPS3-212ENST00000539941 RICTORQ6R327 1708 aa24.29■■□□□ 1.48
COPS3-212ENST00000539941 MYT1LQ9UL68 1186 aa24.28■■□□□ 1.48
COPS3-212ENST00000539941 A2MP01023 1474 aa24.25■■□□□ 1.47
COPS3-212ENST00000539941 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.22■■□□□ 1.47
COPS3-212ENST00000539941 PRDM15P57071 1507 aaPredicted RBP24.22■■□□□ 1.47
COPS3-212ENST00000539941 ZMYM4Q5VZL5 1548 aa24.22■■□□□ 1.47
COPS3-212ENST00000539941 ABCA6Q8N139 1617 aa24.21■■□□□ 1.47
COPS3-212ENST00000539941 VWDEQ8N2E2 1590 aa24.21■■□□□ 1.47
COPS3-212ENST00000539941 BCORL1Q5H9F3 1711 aa24.2■■□□□ 1.47
COPS3-212ENST00000539941 SCAF1Q9H7N4 1312 aaKnown RBP24.2■■□□□ 1.46
COPS3-212ENST00000539941 FRMPD1Q5SYB0 1578 aa24.2■■□□□ 1.46
COPS3-212ENST00000539941 KANK1Q14678 1352 aa24.2■■□□□ 1.46
COPS3-212ENST00000539941 RNF17Q9BXT8 1623 aaKnown RBP24.19■■□□□ 1.46
COPS3-212ENST00000539941 MROH1Q8NDA8 1641 aa24.17■■□□□ 1.46
COPS3-212ENST00000539941 KIF3BO15066 747 aa24.17■■□□□ 1.46
COPS3-212ENST00000539941 ATP10AO60312 1499 aa24.17■■□□□ 1.46
COPS3-212ENST00000539941 DIP2CQ9Y2E4 1556 aa24.17■■□□□ 1.46
COPS3-212ENST00000539941 TET3O43151 1660 aa24.16■■□□□ 1.46
COPS3-212ENST00000539941 L3MBTL2Q969R5 705 aa24.14■■□□□ 1.45
COPS3-212ENST00000539941 LMTK2Q8IWU2 1503 aa24.11■■□□□ 1.45
COPS3-212ENST00000539941 PLA2R1Q13018 1463 aa24.1■■□□□ 1.45
COPS3-212ENST00000539941 E9PCH4 1651 aa24.1■■□□□ 1.45
COPS3-212ENST00000539941 CCDC144AA2RUR9 1427 aa24.1■■□□□ 1.45
COPS3-212ENST00000539941 YEATS2Q9ULM3 1422 aa24.07■■□□□ 1.44
COPS3-212ENST00000539941 REREQ9P2R6 1566 aa24.05■■□□□ 1.44
COPS3-212ENST00000539941 PTPRTO14522 1441 aa24.04■■□□□ 1.44
COPS3-212ENST00000539941 TRPM2O94759 1503 aa24.04■■□□□ 1.44
COPS3-212ENST00000539941 EFCAB6Q5THR3 1501 aa24.04■■□□□ 1.44
COPS3-212ENST00000539941 SPHKAPQ2M3C7 1700 aa24.03■■□□□ 1.44
COPS3-212ENST00000539941 DIEXFQ68CQ4 756 aaKnown RBP24.02■■□□□ 1.44
COPS3-212ENST00000539941 CEP152O94986 1710 aa24■■□□□ 1.43
COPS3-212ENST00000539941 ARID4BQ4LE39 1312 aaPredicted RBP24■■□□□ 1.43
COPS3-212ENST00000539941 UHRF1BP1Q6BDS2 1440 aa23.98■■□□□ 1.43
COPS3-212ENST00000539941 ZC3H13Q5T200 1668 aaKnown RBP23.97■■□□□ 1.43
COPS3-212ENST00000539941 ABCC3O15438 1527 aa23.97■■□□□ 1.43
COPS3-212ENST00000539941 AGLP35573 1532 aa23.97■■□□□ 1.43
COPS3-212ENST00000539941 ARHGEF40Q8TER5 1519 aa23.97■■□□□ 1.43
COPS3-212ENST00000539941 GGT6Q6P531 493 aa23.95■■□□□ 1.42
COPS3-212ENST00000539941 ADAMTSL3P82987 1691 aa23.94■■□□□ 1.42
COPS3-212ENST00000539941 NBPF8Q3BBV2 869 aa23.94■■□□□ 1.42
COPS3-212ENST00000539941 NEURL4Q96JN8 1562 aa23.93■■□□□ 1.42
COPS3-212ENST00000539941 WASHC2CQ9Y4E1 1318 aa23.91■■□□□ 1.42
COPS3-212ENST00000539941 CLTCL1P53675 1640 aa23.91■■□□□ 1.42
COPS3-212ENST00000539941 CAMSAP1Q5T5Y3 1602 aa23.91■■□□□ 1.42
COPS3-212ENST00000539941 SPATA31E1Q6ZUB1 1445 aa23.9■■□□□ 1.42
COPS3-212ENST00000539941 NPATQ14207 1427 aa23.89■■□□□ 1.41
COPS3-212ENST00000539941 ARHGAP31Q2M1Z3 1444 aa23.89■■□□□ 1.41
COPS3-212ENST00000539941 PTPRMP28827 1452 aa23.88■■□□□ 1.41
COPS3-212ENST00000539941 PPP6R1Q9UPN7 881 aa23.88■■□□□ 1.41
COPS3-212ENST00000539941 SIGLEC1Q9BZZ2 1709 aa23.87■■□□□ 1.41
COPS3-212ENST00000539941 RALGAPBQ86X10 1494 aa23.87■■□□□ 1.41
COPS3-212ENST00000539941 CNTLNQ9NXG0 1405 aa23.86■■□□□ 1.41
COPS3-212ENST00000539941 DCAF11Q8TEB1 546 aa23.86■■□□□ 1.41
COPS3-212ENST00000539941 EIF4G2P78344 907 aaKnown RBP eCLIP23.85■■□□□ 1.41
COPS3-212ENST00000539941 STAC3Q96MF2 364 aa23.84■■□□□ 1.41
COPS3-212ENST00000539941 MLECQ14165 292 aa23.83■■□□□ 1.4
COPS3-212ENST00000539941 MADDQ8WXG6 1647 aa23.82■■□□□ 1.4
COPS3-212ENST00000539941 PRAG1Q86YV5 1406 aa23.82■■□□□ 1.4
COPS3-212ENST00000539941 RGL3Q3MIN7 710 aa23.81■■□□□ 1.4
COPS3-212ENST00000539941 KIF1BO60333 1816 aa23.81■■□□□ 1.4
COPS3-212ENST00000539941 NOS1P29475 1434 aa23.8■■□□□ 1.4
COPS3-212ENST00000539941 HSPA5P11021 654 aaKnown RBP23.79■■□□□ 1.4
COPS3-212ENST00000539941 ZNF326Q5BKZ1 582 aaKnown RBP23.79■■□□□ 1.4
COPS3-212ENST00000539941 KDM2AQ9Y2K7 1162 aa23.79■■□□□ 1.4
COPS3-212ENST00000539941 TRPM1Q7Z4N2 1603 aa23.77■■□□□ 1.4
COPS3-212ENST00000539941 UGGT1Q9NYU2 1555 aa23.76■■□□□ 1.39
COPS3-212ENST00000539941 ADGRB3O60242 1522 aa23.74■■□□□ 1.39
COPS3-212ENST00000539941 PIK3C2BO00750 1634 aa23.73■■□□□ 1.39
COPS3-212ENST00000539941 HIRIP3Q9BW71 556 aaPredicted RBP23.73■■□□□ 1.39
COPS3-212ENST00000539941 RIMS1Q86UR5 1692 aaKnown RBP23.73■■□□□ 1.39
COPS3-212ENST00000539941 LAMC1P11047 1609 aa23.72■■□□□ 1.39
COPS3-212ENST00000539941 CFAP65Q6ZU64 1925 aaKnown RBP23.72■■□□□ 1.39
COPS3-212ENST00000539941 SYNMO15061 1565 aa23.72■■□□□ 1.39
COPS3-212ENST00000539941 GPRASP1Q5JY77 1395 aa23.72■■□□□ 1.39
COPS3-212ENST00000539941 PREX1Q8TCU6 1659 aa23.71■■□□□ 1.39
COPS3-212ENST00000539941 USP47Q96K76 1375 aa23.71■■□□□ 1.39
COPS3-212ENST00000539941 ROCK2O75116 1388 aaKnown RBP23.7■■□□□ 1.38
COPS3-212ENST00000539941 MYOM2P54296 1465 aa23.7■■□□□ 1.38
COPS3-212ENST00000539941 CARD11Q9BXL7 1154 aa23.69■■□□□ 1.38
COPS3-212ENST00000539941 MROH2AA6NES4 1674 aa23.69■■□□□ 1.38
COPS3-212ENST00000539941 CLTCQ00610 1675 aaKnown RBP23.69■■□□□ 1.38
COPS3-212ENST00000539941 IFT172Q9UG01 1749 aa23.69■■□□□ 1.38
COPS3-212ENST00000539941 PLPPR3Q6T4P5 718 aa23.68■■□□□ 1.38
COPS3-212ENST00000539941 SLC52A1Q9NWF4 448 aa23.67■■□□□ 1.38
COPS3-212ENST00000539941 POLR1AO95602 1720 aaPredicted RBP23.65■■□□□ 1.38
COPS3-212ENST00000539941 CENPBP07199 599 aaPredicted RBP23.65■■□□□ 1.38
COPS3-212ENST00000539941 ERVK-7P63135 1459 aa23.65■■□□□ 1.38
COPS3-212ENST00000539941 CEBPAP49715 358 aaPredicted RBP23.64■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms