RNA–Protein interactions for RNA: ENST00000539080.1

CLIP1-211, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 4

Gene CLIP1, Length 560 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-211ENST00000539080 KDM5DQ9BY66 1539 aa29.49■■■□□ 2.31
CLIP1-211ENST00000539080 DUOX2Q9NRD8 1548 aa29.48■■■□□ 2.31
CLIP1-211ENST00000539080 RNF17Q9BXT8 1623 aaKnown RBP29.47■■■□□ 2.31
CLIP1-211ENST00000539080 PTPRKQ15262 1439 aa29.45■■■□□ 2.31
CLIP1-211ENST00000539080 WASHC2CQ9Y4E1 1318 aa29.41■■■□□ 2.3
CLIP1-211ENST00000539080 KIF15Q9NS87 1388 aa29.4■■■□□ 2.3
CLIP1-211ENST00000539080 ZC3H13Q5T200 1668 aaKnown RBP29.4■■■□□ 2.3
CLIP1-211ENST00000539080 MYO3AQ8NEV4 1616 aa29.38■■■□□ 2.29
CLIP1-211ENST00000539080 ERBINQ96RT1 1412 aa29.38■■■□□ 2.29
CLIP1-211ENST00000539080 ZNF142P52746 1687 aaPredicted RBP29.37■■■□□ 2.29
CLIP1-211ENST00000539080 STRCQ7RTU9 1775 aa29.36■■■□□ 2.29
CLIP1-211ENST00000539080 PZPP20742 1482 aa29.36■■■□□ 2.29
CLIP1-211ENST00000539080 ANKRD30AQ9BXX3 1397 aa29.36■■■□□ 2.29
CLIP1-211ENST00000539080 MROH1Q8NDA8 1641 aa29.34■■■□□ 2.29
CLIP1-211ENST00000539080 RRP7BPQ9NSQ0 103 aa29.33■■■□□ 2.29
CLIP1-211ENST00000539080 DMRT2Q9Y5R5 561 aa29.33■■■□□ 2.29
CLIP1-211ENST00000539080 ABCC3O15438 1527 aa29.32■■■□□ 2.28
CLIP1-211ENST00000539080 ADGRL2O95490 1459 aa29.32■■■□□ 2.28
CLIP1-211ENST00000539080 FAM50AQ14320 339 aaKnown RBP29.32■■■□□ 2.28
CLIP1-211ENST00000539080 CEP170BQ9Y4F5 1589 aaPredicted RBP29.31■■■□□ 2.28
CLIP1-211ENST00000539080 NCOA1Q15788 1441 aa29.3■■■□□ 2.28
CLIP1-211ENST00000539080 PRDM15P57071 1507 aaPredicted RBP29.3■■■□□ 2.28
CLIP1-211ENST00000539080 CHIC2Q9UKJ5 165 aa29.28■■■□□ 2.28
CLIP1-211ENST00000539080 DEPDC5O75140 1603 aa29.27■■■□□ 2.28
CLIP1-211ENST00000539080 CAMSAP1Q5T5Y3 1602 aa29.27■■■□□ 2.28
CLIP1-211ENST00000539080 TNRQ92752 1358 aa29.26■■■□□ 2.28
CLIP1-211ENST00000539080 A2ML1A8K2U0 1454 aa29.25■■■□□ 2.27
CLIP1-211ENST00000539080 CEP152O94986 1710 aa29.25■■■□□ 2.27
CLIP1-211ENST00000539080 PTPRTO14522 1441 aa29.24■■■□□ 2.27
CLIP1-211ENST00000539080 FBXO31Q5XUX0 539 aaPredicted RBP29.24■■■□□ 2.27
CLIP1-211ENST00000539080 PLA2R1Q13018 1463 aa29.23■■■□□ 2.27
CLIP1-211ENST00000539080 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.21■■■□□ 2.27
CLIP1-211ENST00000539080 SPATA31D1Q6ZQQ2 1576 aa29.2■■■□□ 2.26
CLIP1-211ENST00000539080 NLRP1Q9C000 1473 aa29.19■■■□□ 2.26
CLIP1-211ENST00000539080 KANK1Q14678 1352 aa29.18■■■□□ 2.26
CLIP1-211ENST00000539080 ARHGAP31Q2M1Z3 1444 aa29.17■■■□□ 2.26
CLIP1-211ENST00000539080 ILDR1Q86SU0 546 aaPredicted RBP29.16■■■□□ 2.26
CLIP1-211ENST00000539080 ERVK-7P63135 1459 aa29.15■■■□□ 2.26
CLIP1-211ENST00000539080 VWDEQ8N2E2 1590 aa29.14■■■□□ 2.26
CLIP1-211ENST00000539080 PKD2Q13563 968 aa29.14■■■□□ 2.26
CLIP1-211ENST00000539080 PPARGC1BQ86YN6 1023 aaKnown RBP29.14■■■□□ 2.26
CLIP1-211ENST00000539080 LMTK2Q8IWU2 1503 aa29.14■■■□□ 2.25
CLIP1-211ENST00000539080 ROCK1Q13464 1354 aa29.13■■■□□ 2.25
CLIP1-211ENST00000539080 ANKRD50Q9ULJ7 1429 aa29.13■■■□□ 2.25
CLIP1-211ENST00000539080 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.12■■■□□ 2.251e-6■□□□□ 10.5
CLIP1-211ENST00000539080 UGGT1Q9NYU2 1555 aa29.09■■■□□ 2.25
CLIP1-211ENST00000539080 FBXO41Q8TF61 875 aa29.08■■■□□ 2.25
CLIP1-211ENST00000539080 NCKAP5LQ9HCH0 1330 aa29.08■■■□□ 2.25
CLIP1-211ENST00000539080 THEMISQ8N1K5 641 aaPredicted RBP29.06■■■□□ 2.24
CLIP1-211ENST00000539080 RRBP1Q9P2E9 1410 aaKnown RBP29.05■■■□□ 2.24
CLIP1-211ENST00000539080 POLR1AO95602 1720 aaPredicted RBP29.05■■■□□ 2.24
CLIP1-211ENST00000539080 CERKQ8TCT0 537 aa29.04■■■□□ 2.24
CLIP1-211ENST00000539080 CFAP65Q6ZU64 1925 aaKnown RBP29.04■■■□□ 2.24
CLIP1-211ENST00000539080 EFCAB6Q5THR3 1501 aa29.02■■■□□ 2.24
CLIP1-211ENST00000539080 UNC13BO14795 1591 aa29.01■■■□□ 2.23
CLIP1-211ENST00000539080 UBR1Q8IWV7 1749 aa28.97■■■□□ 2.23
CLIP1-211ENST00000539080 NEURL4Q96JN8 1562 aa28.97■■■□□ 2.23
CLIP1-211ENST00000539080 ITGAEP38570 1179 aa28.97■■■□□ 2.23
CLIP1-211ENST00000539080 LTBP4Q8N2S1 1624 aa28.97■■■□□ 2.23
CLIP1-211ENST00000539080 ANKLE2Q86XL3 938 aa28.96■■■□□ 2.23
CLIP1-211ENST00000539080 RPRD2Q5VT52 1461 aaKnown RBP28.96■■■□□ 2.23
CLIP1-211ENST00000539080 TET3O43151 1660 aa28.96■■■□□ 2.23
CLIP1-211ENST00000539080 MED14O60244 1454 aa28.92■■■□□ 2.22
CLIP1-211ENST00000539080 NOS1P29475 1434 aa28.92■■■□□ 2.22
CLIP1-211ENST00000539080 KDM5AP29375 1690 aaKnown RBP28.92■■■□□ 2.22
CLIP1-211ENST00000539080 GCC2Q8IWJ2 1684 aa28.92■■■□□ 2.22
CLIP1-211ENST00000539080 IQSEC2Q5JU85 1478 aa28.9■■■□□ 2.22
CLIP1-211ENST00000539080 SYNMO15061 1565 aa28.89■■■□□ 2.22
CLIP1-211ENST00000539080 PIK3C2BO00750 1634 aa28.89■■■□□ 2.22
CLIP1-211ENST00000539080 IQGAP3Q86VI3 1631 aa28.89■■■□□ 2.22
CLIP1-211ENST00000539080 SLIT1O75093 1534 aa28.87■■■□□ 2.21
CLIP1-211ENST00000539080 NPHP4O75161 1426 aaPredicted RBP28.86■■■□□ 2.21
CLIP1-211ENST00000539080 ZNF335Q9H4Z2 1342 aaPredicted RBP28.86■■■□□ 2.21
CLIP1-211ENST00000539080 ARHGAP23Q9P227 1491 aa28.85■■■□□ 2.21
CLIP1-211ENST00000539080 IQGAP1P46940 1657 aa28.85■■■□□ 2.21
CLIP1-211ENST00000539080 SLC52A1Q9NWF4 448 aa28.84■■■□□ 2.21
CLIP1-211ENST00000539080 IDI1Q13907 227 aa28.82■■■□□ 2.2
CLIP1-211ENST00000539080 SCAF11Q99590 1463 aaKnown RBP28.81■■■□□ 2.2
CLIP1-211ENST00000539080 NUP155O75694 1391 aa28.81■■■□□ 2.2
CLIP1-211ENST00000539080 E9PCH4 1651 aa28.8■■■□□ 2.2
CLIP1-211ENST00000539080 STAG3Q9UJ98 1225 aa28.8■■■□□ 2.2
CLIP1-211ENST00000539080 ADGRB3O60242 1522 aa28.79■■■□□ 2.2
CLIP1-211ENST00000539080 TMEM2Q9UHN6 1383 aa28.78■■■□□ 2.2
CLIP1-211ENST00000539080 NAIPQ13075 1403 aa28.77■■■□□ 2.2
CLIP1-211ENST00000539080 CPS1P31327 1500 aa28.76■■■□□ 2.19
CLIP1-211ENST00000539080 EID1Q9Y6B2 187 aa28.76■■■□□ 2.19
CLIP1-211ENST00000539080 TXNDC2Q86VQ3 553 aa28.74■■■□□ 2.19
CLIP1-211ENST00000539080 HFM1A2PYH4 1435 aa28.73■■■□□ 2.19
CLIP1-211ENST00000539080 LTKP29376 864 aa28.72■■■□□ 2.19
CLIP1-211ENST00000539080 TMEM131LA2VDJ0 1609 aa28.67■■■□□ 2.18
CLIP1-211ENST00000539080 MYO5BQ9ULV0 1848 aa28.63■■■□□ 2.17
CLIP1-211ENST00000539080 SPHKAPQ2M3C7 1700 aa28.62■■■□□ 2.17
CLIP1-211ENST00000539080 HDGFP51858 240 aaKnown RBP28.6■■■□□ 2.17
CLIP1-211ENST00000539080 STRCP1A6NGW2 1772 aa28.6■■■□□ 2.17
CLIP1-211ENST00000539080 ZFYVE9O95405 1425 aa28.6■■■□□ 2.17
CLIP1-211ENST00000539080 RIMS2Q9UQ26 1411 aa28.56■■■□□ 2.16
CLIP1-211ENST00000539080 UBAP1LF5GYI3 381 aa28.54■■■□□ 2.16
CLIP1-211ENST00000539080 CHGAP10645 457 aaKnown RBP28.53■■■□□ 2.16
CLIP1-211ENST00000539080 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.53■■■□□ 2.16
CLIP1-211ENST00000539080 LRRC7Q96NW7 1537 aa28.53■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms