RNA–Protein interactions for RNA: ENST00000538456.3

SMARCA4-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 3

Gene SMARCA4, Length 738 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-206ENST00000538456 KDM5DQ9BY66 1539 aa22.56■■□□□ 1.2
SMARCA4-206ENST00000538456 KIF3BO15066 747 aa22.55■■□□□ 1.2
SMARCA4-206ENST00000538456 FBXO31Q5XUX0 539 aaPredicted RBP22.55■■□□□ 1.2
SMARCA4-206ENST00000538456 NEURL4Q96JN8 1562 aa22.55■■□□□ 1.2
SMARCA4-206ENST00000538456 CAMSAP2Q08AD1 1489 aa22.54■■□□□ 1.2
SMARCA4-206ENST00000538456 CCDC141Q6ZP82 1450 aa22.54■■□□□ 1.2
SMARCA4-206ENST00000538456 TNRQ92752 1358 aa22.54■■□□□ 1.2
SMARCA4-206ENST00000538456 PZPP20742 1482 aa22.52■■□□□ 1.2
SMARCA4-206ENST00000538456 NCOA2Q15596 1464 aa22.52■■□□□ 1.2
SMARCA4-206ENST00000538456 SCAF1Q9H7N4 1312 aaKnown RBP22.52■■□□□ 1.2
SMARCA4-206ENST00000538456 FAM135AQ9P2D6 1515 aa22.49■■□□□ 1.19
SMARCA4-206ENST00000538456 WASHC2CQ9Y4E1 1318 aa22.49■■□□□ 1.19
SMARCA4-206ENST00000538456 PIP4K2BP78356 416 aa22.48■■□□□ 1.19
SMARCA4-206ENST00000538456 CPS1P31327 1500 aa22.47■■□□□ 1.19
SMARCA4-206ENST00000538456 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.46■■□□□ 1.19
SMARCA4-206ENST00000538456 SHANK2Q9UPX8 1470 aa22.46■■□□□ 1.19
SMARCA4-206ENST00000538456 ARHGEF5Q12774 1597 aa22.44■■□□□ 1.18
SMARCA4-206ENST00000538456 UGGT1Q9NYU2 1555 aa22.43■■□□□ 1.18
SMARCA4-206ENST00000538456 HSPA1LP34931 641 aa22.43■■□□□ 1.18
SMARCA4-206ENST00000538456 NLRP1Q9C000 1473 aa22.42■■□□□ 1.18
SMARCA4-206ENST00000538456 MIA2Q96PC5 1412 aa22.42■■□□□ 1.18
SMARCA4-206ENST00000538456 ANKLE2Q86XL3 938 aa22.42■■□□□ 1.18
SMARCA4-206ENST00000538456 VWDEQ8N2E2 1590 aa22.42■■□□□ 1.18
SMARCA4-206ENST00000538456 TOM1O60784 492 aa22.41■■□□□ 1.18
SMARCA4-206ENST00000538456 RSPH4AQ5TD94 716 aa22.41■■□□□ 1.18
SMARCA4-206ENST00000538456 MED1Q15648 1581 aaPredicted RBP22.41■■□□□ 1.18
SMARCA4-206ENST00000538456 THEMISQ8N1K5 641 aaPredicted RBP22.4■■□□□ 1.18
SMARCA4-206ENST00000538456 DEPDC5O75140 1603 aa22.39■■□□□ 1.18
SMARCA4-206ENST00000538456 IQGAP1P46940 1657 aa22.39■■□□□ 1.17
SMARCA4-206ENST00000538456 NPHP4O75161 1426 aaPredicted RBP22.39■■□□□ 1.17
SMARCA4-206ENST00000538456 RNF17Q9BXT8 1623 aaKnown RBP22.39■■□□□ 1.17
SMARCA4-206ENST00000538456 TSPY4P0CV99 314 aa22.38■■□□□ 1.17
SMARCA4-206ENST00000538456 TSPY10P0CW01 314 aa22.38■■□□□ 1.17
SMARCA4-206ENST00000538456 ABCC3O15438 1527 aa22.36■■□□□ 1.17
SMARCA4-206ENST00000538456 ZC3H13Q5T200 1668 aaKnown RBP22.36■■□□□ 1.17
SMARCA4-206ENST00000538456 MED14O60244 1454 aa22.35■■□□□ 1.17
SMARCA4-206ENST00000538456 CFAP65Q6ZU64 1925 aaKnown RBP22.33■■□□□ 1.17
SMARCA4-206ENST00000538456 STRCP1A6NGW2 1772 aa22.33■■□□□ 1.17
SMARCA4-206ENST00000538456 ALKQ9UM73 1620 aa22.33■■□□□ 1.17
SMARCA4-206ENST00000538456 CEP152O94986 1710 aa22.33■■□□□ 1.17
SMARCA4-206ENST00000538456 MAST1Q9Y2H9 1570 aa22.33■■□□□ 1.16
SMARCA4-206ENST00000538456 EIF2AK4Q9P2K8 1649 aaKnown RBP22.32■■□□□ 1.16
SMARCA4-206ENST00000538456 LRRC9Q6ZRR7 1453 aa22.32■■□□□ 1.16
SMARCA4-206ENST00000538456 ERVK-7P63135 1459 aa22.3■■□□□ 1.16
SMARCA4-206ENST00000538456 MROH1Q8NDA8 1641 aa22.3■■□□□ 1.16
SMARCA4-206ENST00000538456 SENP3Q9H4L4 574 aaPredicted RBP22.29■■□□□ 1.16
SMARCA4-206ENST00000538456 SYNMO15061 1565 aa22.27■■□□□ 1.16
SMARCA4-206ENST00000538456 UBR1Q8IWV7 1749 aa22.27■■□□□ 1.16
SMARCA4-206ENST00000538456 VPS8Q8N3P4 1428 aa22.27■■□□□ 1.16
SMARCA4-206ENST00000538456 LRRC7Q96NW7 1537 aa22.26■■□□□ 1.15
SMARCA4-206ENST00000538456 PHF23Q9BUL5 403 aaPredicted RBP22.24■■□□□ 1.15
SMARCA4-206ENST00000538456 MYOM3Q5VTT5 1437 aa22.23■■□□□ 1.15
SMARCA4-206ENST00000538456 KANK4Q5T7N3 995 aaPredicted RBP22.22■■□□□ 1.15
SMARCA4-206ENST00000538456 DUOX2Q9NRD8 1548 aa22.21■■□□□ 1.15
SMARCA4-206ENST00000538456 SCAF11Q99590 1463 aaKnown RBP22.21■■□□□ 1.15
SMARCA4-206ENST00000538456 CROCC2H7BZ55 1655 aa22.18■■□□□ 1.14
SMARCA4-206ENST00000538456 PRDM15P57071 1507 aaPredicted RBP22.18■■□□□ 1.14
SMARCA4-206ENST00000538456 MAP3K1Q13233 1512 aa22.16■■□□□ 1.14
SMARCA4-206ENST00000538456 KIF15Q9NS87 1388 aa22.15■■□□□ 1.14
SMARCA4-206ENST00000538456 LOC105371045A0A1W2PR82 267 aa22.15■■□□□ 1.14
SMARCA4-206ENST00000538456 SLIT1O75093 1534 aa22.15■■□□□ 1.14
SMARCA4-206ENST00000538456 XIRP1Q702N8 1843 aaKnown RBP22.15■■□□□ 1.14
SMARCA4-206ENST00000538456 ARHGAP23Q9P227 1491 aa22.15■■□□□ 1.14
SMARCA4-206ENST00000538456 LTKP29376 864 aa22.14■■□□□ 1.13
SMARCA4-206ENST00000538456 TXNDC2Q86VQ3 553 aa22.14■■□□□ 1.13
SMARCA4-206ENST00000538456 PIK3C2BO00750 1634 aa22.13■■□□□ 1.13
SMARCA4-206ENST00000538456 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.12■■□□□ 1.132e-10■■■□□ 17.6
SMARCA4-206ENST00000538456 RRP7BPQ9NSQ0 103 aa22.12■■□□□ 1.13
SMARCA4-206ENST00000538456 ARHGAP31Q2M1Z3 1444 aa22.12■■□□□ 1.13
SMARCA4-206ENST00000538456 ERBINQ96RT1 1412 aa22.12■■□□□ 1.13
SMARCA4-206ENST00000538456 PTPN23Q9H3S7 1636 aa22.1■■□□□ 1.13
SMARCA4-206ENST00000538456 ABCC5O15440 1437 aa22.1■■□□□ 1.13
SMARCA4-206ENST00000538456 EID1Q9Y6B2 187 aa22.09■■□□□ 1.13
SMARCA4-206ENST00000538456 STAG3Q9UJ98 1225 aa22.06■■□□□ 1.12
SMARCA4-206ENST00000538456 TMEM2Q9UHN6 1383 aa22.06■■□□□ 1.12
SMARCA4-206ENST00000538456 DAPK1P53355 1430 aa22.05■■□□□ 1.12
SMARCA4-206ENST00000538456 KANK1Q14678 1352 aa22.04■■□□□ 1.12
SMARCA4-206ENST00000538456 EFCAB6Q5THR3 1501 aa22.04■■□□□ 1.12
SMARCA4-206ENST00000538456 KDM5AP29375 1690 aaKnown RBP22.02■■□□□ 1.12
SMARCA4-206ENST00000538456 CHIC2Q9UKJ5 165 aa22■■□□□ 1.11
SMARCA4-206ENST00000538456 TMEM94Q12767 1356 aa21.99■■□□□ 1.11
SMARCA4-206ENST00000538456 FGD6Q6ZV73 1430 aa21.99■■□□□ 1.11
SMARCA4-206ENST00000538456 RGS17Q9UGC6 210 aaPredicted RBP21.99■■□□□ 1.11
SMARCA4-206ENST00000538456 LMTK2Q8IWU2 1503 aa21.98■■□□□ 1.11
SMARCA4-206ENST00000538456 IDI1Q13907 227 aa21.98■■□□□ 1.11
SMARCA4-206ENST00000538456 ROBO1Q9Y6N7 1651 aa21.98■■□□□ 1.11
SMARCA4-206ENST00000538456 APLP2Q06481 763 aa21.97■■□□□ 1.11
SMARCA4-206ENST00000538456 RBM33Q96EV2 1170 aaKnown RBP21.97■■□□□ 1.11
SMARCA4-206ENST00000538456 SLC26A8Q96RN1 970 aa21.97■■□□□ 1.11
SMARCA4-206ENST00000538456 ANKRD30AQ9BXX3 1397 aa21.97■■□□□ 1.11
SMARCA4-206ENST00000538456 FAM135BQ49AJ0 1406 aa21.97■■□□□ 1.11
SMARCA4-206ENST00000538456 ADGRB3O60242 1522 aa21.96■■□□□ 1.11
SMARCA4-206ENST00000538456 TET3O43151 1660 aa21.95■■□□□ 1.1
SMARCA4-206ENST00000538456 KCNA6P17658 529 aa21.94■■□□□ 1.1
SMARCA4-206ENST00000538456 PROSER2Q86WR7 435 aaPredicted RBP21.93■■□□□ 1.1
SMARCA4-206ENST00000538456 NWD1Q149M9 1564 aa21.91■■□□□ 1.1
SMARCA4-206ENST00000538456 NOS1P29475 1434 aa21.91■■□□□ 1.1
SMARCA4-206ENST00000538456 BCANQ96GW7 911 aa21.91■■□□□ 1.1
SMARCA4-206ENST00000538456 MYO5BQ9ULV0 1848 aa21.91■■□□□ 1.1
SMARCA4-206ENST00000538456 NKTRP30414 1462 aaKnown RBP21.9■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms