RNA–Protein interactions for RNA: ENST00000538176.5

CCDC78-215, Transcript of coiled-coil domain containing 78, human

TSL 2

Gene CCDC78, Length 1,166 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCDC78-215	ENST00000538176	DUOX2	Q9NRD8	1548 aa		33.2	■■■□□ 2.91
CCDC78-215	ENST00000538176	DAPK1	P53355	1430 aa		33.19	■■■□□ 2.9
CCDC78-215	ENST00000538176	EIF2AK4	Q9P2K8	1649 aa	Known RBP	33.19	■■■□□ 2.9
CCDC78-215	ENST00000538176	DNMT1	P26358	1616 aa	Known RBP	33.17	■■■□□ 2.9
CCDC78-215	ENST00000538176	ILDR1	Q86SU0	546 aa	Predicted RBP	33.16	■■■□□ 2.9
CCDC78-215	ENST00000538176	KIF15	Q9NS87	1388 aa		33.15	■■■□□ 2.9
CCDC78-215	ENST00000538176	CROCC2	H7BZ55	1655 aa		33.14	■■■□□ 2.9
CCDC78-215	ENST00000538176	RNF17	Q9BXT8	1623 aa	Known RBP	33.13	■■■□□ 2.89
CCDC78-215	ENST00000538176	ANKRD30A	Q9BXX3	1397 aa		33.13	■■■□□ 2.89
CCDC78-215	ENST00000538176	RRP7BP	Q9NSQ0	103 aa		33.13	■■■□□ 2.89
CCDC78-215	ENST00000538176	PZP	P20742	1482 aa		33.12	■■■□□ 2.89
CCDC78-215	ENST00000538176	ERBIN	Q96RT1	1412 aa		33.11	■■■□□ 2.89
CCDC78-215	ENST00000538176	STRC	Q7RTU9	1775 aa		33.11	■■■□□ 2.89
CCDC78-215	ENST00000538176	FAM50A	Q14320	339 aa	Known RBP	33.09	■■■□□ 2.89
CCDC78-215	ENST00000538176	PTPRT	O14522	1441 aa		33.09	■■■□□ 2.89
CCDC78-215	ENST00000538176	NCOA1	Q15788	1441 aa		33.07	■■■□□ 2.88
CCDC78-215	ENST00000538176	ZC3H13	Q5T200	1668 aa	Known RBP	33.07	■■■□□ 2.88
CCDC78-215	ENST00000538176	MYO3A	Q8NEV4	1616 aa		33.06	■■■□□ 2.88
CCDC78-215	ENST00000538176	ZNF142	P52746	1687 aa	Predicted RBP	33.06	■■■□□ 2.88
CCDC78-215	ENST00000538176	TNR	Q92752	1358 aa		33.06	■■■□□ 2.88
CCDC78-215	ENST00000538176	FBXO31	Q5XUX0	539 aa	Predicted RBP	33.05	■■■□□ 2.88
CCDC78-215	ENST00000538176	FBXO41	Q8TF61	875 aa		33.05	■■■□□ 2.88
CCDC78-215	ENST00000538176	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	33.04	■■■□□ 2.88
CCDC78-215	ENST00000538176	PKD2	Q13563	968 aa		33.04	■■■□□ 2.88
CCDC78-215	ENST00000538176	CHIC2	Q9UKJ5	165 aa		33.04	■■■□□ 2.88
CCDC78-215	ENST00000538176	CAMSAP1	Q5T5Y3	1602 aa		33.03	■■■□□ 2.88
CCDC78-215	ENST00000538176	A2ML1	A8K2U0	1454 aa		33.03	■■■□□ 2.88
CCDC78-215	ENST00000538176	PLA2R1	Q13018	1463 aa		33.02	■■■□□ 2.88
CCDC78-215	ENST00000538176	ABCC3	O15438	1527 aa		33.02	■■■□□ 2.88
CCDC78-215	ENST00000538176	ADGRL2	O95490	1459 aa		32.99	■■■□□ 2.87
CCDC78-215	ENST00000538176	KANK1	Q14678	1352 aa		32.97	■■■□□ 2.87
CCDC78-215	ENST00000538176	CERK	Q8TCT0	537 aa		32.97	■■■□□ 2.87
CCDC78-215	ENST00000538176	NLRP1	Q9C000	1473 aa		32.97	■■■□□ 2.87
CCDC78-215	ENST00000538176	MROH1	Q8NDA8	1641 aa		32.96	■■■□□ 2.87
CCDC78-215	ENST00000538176	PRDM15	P57071	1507 aa	Predicted RBP	32.94	■■■□□ 2.86
CCDC78-215	ENST00000538176	THEMIS	Q8N1K5	641 aa	Predicted RBP	32.94	■■■□□ 2.86
CCDC78-215	ENST00000538176	ARHGAP31	Q2M1Z3	1444 aa		32.92	■■■□□ 2.86
CCDC78-215	ENST00000538176	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	32.91	■■■□□ 2.86
CCDC78-215	ENST00000538176	NCKAP5L	Q9HCH0	1330 aa		32.91	■■■□□ 2.86
CCDC78-215	ENST00000538176	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	32.91	■■■□□ 2.86
CCDC78-215	ENST00000538176	DEPDC5	O75140	1603 aa		32.89	■■■□□ 2.86
CCDC78-215	ENST00000538176	SPATA31D1	Q6ZQQ2	1576 aa		32.89	■■■□□ 2.86
CCDC78-215	ENST00000538176	ERVK-7	P63135	1459 aa		32.86	■■■□□ 2.85
CCDC78-215	ENST00000538176	ANKRD50	Q9ULJ7	1429 aa		32.85	■■■□□ 2.85
CCDC78-215	ENST00000538176	CEP152	O94986	1710 aa		32.85	■■■□□ 2.85
CCDC78-215	ENST00000538176	ANKLE2	Q86XL3	938 aa		32.84	■■■□□ 2.85
CCDC78-215	ENST00000538176	ROCK1	Q13464	1354 aa		32.83	■■■□□ 2.85
CCDC78-215	ENST00000538176	UGGT1	Q9NYU2	1555 aa		32.83	■■■□□ 2.85
CCDC78-215	ENST00000538176	LMTK2	Q8IWU2	1503 aa		32.81	■■■□□ 2.84
CCDC78-215	ENST00000538176	PPARGC1B	Q86YN6	1023 aa	Known RBP	32.8	■■■□□ 2.84
CCDC78-215	ENST00000538176	VWDE	Q8N2E2	1590 aa		32.77	■■■□□ 2.84
CCDC78-215	ENST00000538176	CFAP65	Q6ZU64	1925 aa	Known RBP	32.75	■■■□□ 2.83
CCDC78-215	ENST00000538176	LTBP4	Q8N2S1	1624 aa		32.71	■■■□□ 2.83
CCDC78-215	ENST00000538176	POLR1A	O95602	1720 aa	Predicted RBP	32.7	■■■□□ 2.83
CCDC78-215	ENST00000538176	IQSEC2	Q5JU85	1478 aa		32.69	■■■□□ 2.82
CCDC78-215	ENST00000538176	ITGAE	P38570	1179 aa		32.68	■■■□□ 2.82
CCDC78-215	ENST00000538176	MED14	O60244	1454 aa		32.67	■■■□□ 2.82
CCDC78-215	ENST00000538176	RRBP1	Q9P2E9	1410 aa	Known RBP	32.66	■■■□□ 2.82
CCDC78-215	ENST00000538176	RPRD2	Q5VT52	1461 aa	Known RBP	32.66	■■■□□ 2.82
CCDC78-215	ENST00000538176	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	32.65	■■■□□ 2.82
CCDC78-215	ENST00000538176	EFCAB6	Q5THR3	1501 aa		32.64	■■■□□ 2.82
CCDC78-215	ENST00000538176	SLC52A1	Q9NWF4	448 aa		32.64	■■■□□ 2.82
CCDC78-215	ENST00000538176	STAG3	Q9UJ98	1225 aa		32.63	■■■□□ 2.81
CCDC78-215	ENST00000538176	NEURL4	Q96JN8	1562 aa		32.62	■■■□□ 2.81
CCDC78-215	ENST00000538176	NPHP4	O75161	1426 aa	Predicted RBP	32.61	■■■□□ 2.81
CCDC78-215	ENST00000538176	UBR1	Q8IWV7	1749 aa		32.61	■■■□□ 2.81
CCDC78-215	ENST00000538176	NOS1	P29475	1434 aa		32.6	■■■□□ 2.81
CCDC78-215	ENST00000538176	IDI1	Q13907	227 aa		32.59	■■■□□ 2.81
CCDC78-215	ENST00000538176	EID1	Q9Y6B2	187 aa		32.59	■■■□□ 2.81
CCDC78-215	ENST00000538176	UNC13B	O14795	1591 aa		32.58	■■■□□ 2.81
CCDC78-215	ENST00000538176	SLIT1	O75093	1534 aa		32.56	■■■□□ 2.8
CCDC78-215	ENST00000538176	TET3	O43151	1660 aa		32.56	■■■□□ 2.8
CCDC78-215	ENST00000538176	KDM5A	P29375	1690 aa	Known RBP	32.56	■■■□□ 2.8
CCDC78-215	ENST00000538176	TXNDC2	Q86VQ3	553 aa		32.55	■■■□□ 2.8
CCDC78-215	ENST00000538176	ARHGAP23	Q9P227	1491 aa		32.54	■■■□□ 2.8
CCDC78-215	ENST00000538176	SCAF11	Q99590	1463 aa	Known RBP	32.52	■■■□□ 2.8
CCDC78-215	ENST00000538176	PIK3C2B	O00750	1634 aa		32.51	■■■□□ 2.8
CCDC78-215	ENST00000538176	NUP155	O75694	1391 aa		32.51	■■■□□ 2.79
CCDC78-215	ENST00000538176	TMEM2	Q9UHN6	1383 aa		32.51	■■■□□ 2.79
CCDC78-215	ENST00000538176	CPS1	P31327	1500 aa		32.51	■■■□□ 2.79
CCDC78-215	ENST00000538176	IQGAP1	P46940	1657 aa		32.5	■■■□□ 2.79
CCDC78-215	ENST00000538176	GCC2	Q8IWJ2	1684 aa		32.5	■■■□□ 2.79
CCDC78-215	ENST00000538176	SYNM	O15061	1565 aa		32.49	■■■□□ 2.79
CCDC78-215	ENST00000538176	LTK	P29376	864 aa		32.48	■■■□□ 2.79
CCDC78-215	ENST00000538176	IQGAP3	Q86VI3	1631 aa		32.47	■■■□□ 2.79
CCDC78-215	ENST00000538176	HDGF	P51858	240 aa	Known RBP	32.45	■■■□□ 2.79
CCDC78-215	ENST00000538176	ADGRB3	O60242	1522 aa		32.4	■■■□□ 2.78
CCDC78-215	ENST00000538176	UBAP1L	F5GYI3	381 aa		32.38	■■■□□ 2.77
CCDC78-215	ENST00000538176	NAIP	Q13075	1403 aa		32.37	■■■□□ 2.77
CCDC78-215	ENST00000538176		E9PCH4	1651 aa		32.37	■■■□□ 2.77
CCDC78-215	ENST00000538176	TOM1	O60784	492 aa		32.33	■■■□□ 2.77
CCDC78-215	ENST00000538176	HFM1	A2PYH4	1435 aa		32.32	■■■□□ 2.76
CCDC78-215	ENST00000538176	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	32.31	■■■□□ 2.76
CCDC78-215	ENST00000538176	CHGA	P10645	457 aa	Known RBP	32.27	■■■□□ 2.76
CCDC78-215	ENST00000538176	TMEM131L	A2VDJ0	1609 aa		32.26	■■■□□ 2.76
CCDC78-215	ENST00000538176	PPP1R15A	O75807	674 aa	Predicted RBP	32.24	■■■□□ 2.75
CCDC78-215	ENST00000538176	BCAN	Q96GW7	911 aa		32.24	■■■□□ 2.75
CCDC78-215	ENST00000538176	ZFYVE9	O95405	1425 aa		32.23	■■■□□ 2.75
CCDC78-215	ENST00000538176	RIMS2	Q9UQ26	1411 aa		32.23	■■■□□ 2.75
CCDC78-215	ENST00000538176	TRIM52	Q96A61	297 aa		32.22	■■■□□ 2.75

Retrieved 100 of 20,778 RNA–protein pairs in 88.9 ms