RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-208ENST00000536710 RIMBP2O15034 1052 aa10.82□□□□□ -0.68
PRKDC-208ENST00000536710 NUDT7P0C024 238 aa10.82□□□□□ -0.68
PRKDC-208ENST00000536710 ZNF454Q8N9F8 522 aa10.82□□□□□ -0.68
PRKDC-208ENST00000536710 ARSIQ5FYB1 569 aa10.81□□□□□ -0.68
PRKDC-208ENST00000536710 DDRGK1Q96HY6 314 aa10.81□□□□□ -0.68
PRKDC-208ENST00000536710 FOSBP53539 338 aa10.8□□□□□ -0.68
PRKDC-208ENST00000536710 KHSRPQ92945 711 aaKnown RBP eCLIP10.8□□□□□ -0.686e-6■■□□□ 14.5
PRKDC-208ENST00000536710 SCUBE2Q9NQ36 999 aa10.8□□□□□ -0.68
PRKDC-208ENST00000536710 KDM4FA0A1W2PPD8 638 aa10.79□□□□□ -0.68
PRKDC-208ENST00000536710 POTEJP0CG39 1038 aa10.79□□□□□ -0.68
PRKDC-208ENST00000536710 ZNF710Q8N1W2 664 aa10.79□□□□□ -0.68
PRKDC-208ENST00000536710 ZDHHC16Q969W1 377 aa10.78□□□□□ -0.68
PRKDC-208ENST00000536710 C6orf132Q5T0Z8 1188 aa10.77□□□□□ -0.69
PRKDC-208ENST00000536710 GIGYF2Q6Y7W6 1299 aaKnown RBP10.77□□□□□ -0.69
PRKDC-208ENST00000536710 POTEB2H3BUK9 544 aa10.76□□□□□ -0.69
PRKDC-208ENST00000536710 HOXB3P14651 431 aaPredicted RBP10.76□□□□□ -0.69
PRKDC-208ENST00000536710 PLEKHG3A1L390 1219 aa10.75□□□□□ -0.69
PRKDC-208ENST00000536710 MAMSTRQ6ZN01 415 aa10.75□□□□□ -0.69
PRKDC-208ENST00000536710 CERKQ8TCT0 537 aa10.75□□□□□ -0.69
PRKDC-208ENST00000536710 CLCN1P35523 988 aa10.74□□□□□ -0.69
PRKDC-208ENST00000536710 MDM2Q00987 491 aaPredicted RBP10.74□□□□□ -0.69
PRKDC-208ENST00000536710 FAM161AQ3B820 660 aa10.74□□□□□ -0.69
PRKDC-208ENST00000536710 ZSWIM6Q9HCJ5 1215 aa10.74□□□□□ -0.69
PRKDC-208ENST00000536710 PADI6Q6TGC4 694 aa10.73□□□□□ -0.69
PRKDC-208ENST00000536710 ADAM33Q9BZ11 813 aa10.73□□□□□ -0.69
PRKDC-208ENST00000536710 GPR153Q6NV75 609 aa10.72□□□□□ -0.69
PRKDC-208ENST00000536710 REPIN1Q9BWE0 567 aaKnown RBP10.72□□□□□ -0.69
PRKDC-208ENST00000536710 OATP04181 439 aa10.71□□□□□ -0.69
PRKDC-208ENST00000536710 MS4A1P11836 297 aa10.71□□□□□ -0.69
PRKDC-208ENST00000536710 GPCPD1Q9NPB8 672 aa10.71□□□□□ -0.69
PRKDC-208ENST00000536710 PHOX2BQ99453 314 aa10.7□□□□□ -0.7
PRKDC-208ENST00000536710 LHX6Q9UPM6 363 aa10.7□□□□□ -0.7
PRKDC-208ENST00000536710 METTL3Q86U44 580 aaKnown RBP10.69□□□□□ -0.7
PRKDC-208ENST00000536710 PPP4R3BQ5MIZ7 849 aa10.68□□□□□ -0.7
PRKDC-208ENST00000536710 NLRP7Q8WX94 980 aa10.68□□□□□ -0.7
PRKDC-208ENST00000536710 PRSS12P56730 875 aa10.67□□□□□ -0.7
PRKDC-208ENST00000536710 ADGRG1Q9Y653 693 aa10.67□□□□□ -0.7
PRKDC-208ENST00000536710 SSTR3P32745 418 aaPredicted RBP10.66□□□□□ -0.7
PRKDC-208ENST00000536710 CDCA7LQ96GN5 454 aa10.66□□□□□ -0.7
PRKDC-208ENST00000536710 RBM27Q9P2N5 1060 aaKnown RBP10.66□□□□□ -0.7
PRKDC-208ENST00000536710 PSDA5PKW4 1024 aaPredicted RBP10.65□□□□□ -0.7
PRKDC-208ENST00000536710 PXYLP1Q8TE99 480 aa10.65□□□□□ -0.7
PRKDC-208ENST00000536710 SNPHO15079 494 aa10.64□□□□□ -0.71
PRKDC-208ENST00000536710 RBM46Q8TBY0 533 aaKnown RBP10.64□□□□□ -0.71
PRKDC-208ENST00000536710 PCMTD1Q96MG8 357 aaPredicted RBP10.64□□□□□ -0.71
PRKDC-208ENST00000536710 TMUB1Q9BVT8 246 aa10.64□□□□□ -0.71
PRKDC-208ENST00000536710 ATP1B4Q9UN42 357 aaPredicted RBP10.64□□□□□ -0.71
PRKDC-208ENST00000536710 SUPT5HO00267 1087 aaKnown RBP10.62□□□□□ -0.71
PRKDC-208ENST00000536710 PTPREP23469 700 aa10.62□□□□□ -0.71
PRKDC-208ENST00000536710 TTC13Q8NBP0 860 aa10.62□□□□□ -0.71
PRKDC-208ENST00000536710 BEGAINQ9BUH8 593 aa10.62□□□□□ -0.71
PRKDC-208ENST00000536710 GOPCQ9HD26 462 aa10.62□□□□□ -0.71
PRKDC-208ENST00000536710 COL9A1P20849 921 aa10.61□□□□□ -0.71
PRKDC-208ENST00000536710 BCL2L12Q9HB09 334 aa10.61□□□□□ -0.71
PRKDC-208ENST00000536710 FAM217BQ9NTX9 383 aaPredicted RBP10.61□□□□□ -0.71
PRKDC-208ENST00000536710 RSPH6AQ9H0K4 717 aa10.59□□□□□ -0.71
PRKDC-208ENST00000536710 PPP1R3GB7ZBB8 358 aa10.58□□□□□ -0.72
PRKDC-208ENST00000536710 HOXB1P14653 301 aaPredicted RBP10.58□□□□□ -0.72
PRKDC-208ENST00000536710 SH3D19Q5HYK7 790 aa10.58□□□□□ -0.72
PRKDC-208ENST00000536710 FAM198AQ9UFP1 575 aa10.57□□□□□ -0.72
PRKDC-208ENST00000536710 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.55□□□□□ -0.72
PRKDC-208ENST00000536710 RCCD1A6NED2 376 aa10.55□□□□□ -0.72
PRKDC-208ENST00000536710 KCNH8Q96L42 1107 aa10.55□□□□□ -0.72
PRKDC-208ENST00000536710 ZMYND15Q9H091 742 aa10.55□□□□□ -0.72
PRKDC-208ENST00000536710 TSKSQ9UJT2 592 aa10.55□□□□□ -0.72
PRKDC-208ENST00000536710 NBPF26B4DH59 902 aa10.54□□□□□ -0.72
PRKDC-208ENST00000536710 SKIV2LQ15477 1246 aaKnown RBP10.54□□□□□ -0.72
PRKDC-208ENST00000536710 NUDT18Q6ZVK8 323 aa10.54□□□□□ -0.72
PRKDC-208ENST00000536710 KCNK17Q96T54 332 aa10.54□□□□□ -0.72
PRKDC-208ENST00000536710 POLR3EQ9NVU0 708 aa10.54□□□□□ -0.72
PRKDC-208ENST00000536710 PNMA3Q9UL41 463 aa10.54□□□□□ -0.72
PRKDC-208ENST00000536710 FLIIQ13045 1269 aa10.53□□□□□ -0.72
PRKDC-208ENST00000536710 PACS2Q86VP3 889 aa10.53□□□□□ -0.72
PRKDC-208ENST00000536710 TRIM6-TRIM34B2RNG4 842 aa10.52□□□□□ -0.73
PRKDC-208ENST00000536710 EYA1Q99502 592 aa10.52□□□□□ -0.73
PRKDC-208ENST00000536710 TATDN2Q93075 761 aa10.51□□□□□ -0.73
PRKDC-208ENST00000536710 DNAJB2P25686 324 aa10.5□□□□□ -0.73
PRKDC-208ENST00000536710 PROX2Q3B8N5 592 aa10.5□□□□□ -0.73
PRKDC-208ENST00000536710 DDX11L8A8MPP1 907 aa10.49□□□□□ -0.73
PRKDC-208ENST00000536710 SMAPO00193 183 aa10.49□□□□□ -0.73
PRKDC-208ENST00000536710 MYSM1Q5VVJ2 828 aa10.49□□□□□ -0.73
PRKDC-208ENST00000536710 PROCA1Q8NCQ7 364 aaPredicted RBP10.49□□□□□ -0.73
PRKDC-208ENST00000536710 TBC1D2Q9BYX2 928 aa10.49□□□□□ -0.73
PRKDC-208ENST00000536710 C3orf80F5H4A9 247 aa10.48□□□□□ -0.73
PRKDC-208ENST00000536710 DIXDC1Q155Q3 683 aa10.48□□□□□ -0.73
PRKDC-208ENST00000536710 SULF1Q8IWU6 871 aa10.48□□□□□ -0.73
PRKDC-208ENST00000536710 OTUD5Q96G74 571 aa10.48□□□□□ -0.73
PRKDC-208ENST00000536710 CLK2P49760 499 aaKnown RBP10.47□□□□□ -0.73
PRKDC-208ENST00000536710 ARXQ96QS3 562 aa10.46□□□□□ -0.73
PRKDC-208ENST00000536710 ERBB3P21860 1342 aa10.46□□□□□ -0.73
PRKDC-208ENST00000536710 NUTM1Q86Y26 1132 aa10.45□□□□□ -0.74
PRKDC-208ENST00000536710 TMEM134Q9H6X4 195 aa10.45□□□□□ -0.74
PRKDC-208ENST00000536710 CD46P15529 392 aa10.44□□□□□ -0.74
PRKDC-208ENST00000536710 PSEN2P49810 448 aa10.44□□□□□ -0.74
PRKDC-208ENST00000536710 RDH13Q8NBN7 331 aa10.44□□□□□ -0.74
PRKDC-208ENST00000536710 KIAA1468Q9P260 1216 aa10.44□□□□□ -0.74
PRKDC-208ENST00000536710 ONECUT3O60422 494 aaPredicted RBP10.43□□□□□ -0.74
PRKDC-208ENST00000536710 VARS2Q5ST30 1063 aaKnown RBP10.43□□□□□ -0.74
PRKDC-208ENST00000536710 SPIRE2Q8WWL2 714 aa10.43□□□□□ -0.74
PRKDC-208ENST00000536710 UBTFP17480 764 aaKnown RBP10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms