RNA–Protein interactions for RNA: ENST00000536548.5

CPSF7-216, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 4

Gene CPSF7, Length 598 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-216ENST00000536548 UPF1Q92900 1129 aaKnown RBP eCLIP11.22□□□□□ -0.61
CPSF7-216ENST00000536548 ATP1B4Q9UN42 357 aaPredicted RBP11.22□□□□□ -0.61
CPSF7-216ENST00000536548 ITSN2Q9NZM3 1697 aa11.2□□□□□ -0.62
CPSF7-216ENST00000536548 A2ML1A8K2U0 1454 aa11.2□□□□□ -0.62
CPSF7-216ENST00000536548 LRRC7Q96NW7 1537 aa11.19□□□□□ -0.62
CPSF7-216ENST00000536548 RNF17Q9BXT8 1623 aaKnown RBP11.19□□□□□ -0.62
CPSF7-216ENST00000536548 ABCC1P33527 1531 aa11.19□□□□□ -0.62
CPSF7-216ENST00000536548 GGT6Q6P531 493 aa11.18□□□□□ -0.62
CPSF7-216ENST00000536548 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.17□□□□□ -0.621e-11■■□□□ 12.1
CPSF7-216ENST00000536548 FBXO31Q5XUX0 539 aaPredicted RBP11.16□□□□□ -0.62
CPSF7-216ENST00000536548 ANKLE2Q86XL3 938 aa11.16□□□□□ -0.62
CPSF7-216ENST00000536548 SUPT16HQ9Y5B9 1047 aaKnown RBP11.16□□□□□ -0.62
CPSF7-216ENST00000536548 NPHP4O75161 1426 aaPredicted RBP11.15□□□□□ -0.62
CPSF7-216ENST00000536548 SAMD9LQ8IVG5 1584 aa11.15□□□□□ -0.62
CPSF7-216ENST00000536548 DHX57Q6P158 1386 aaKnown RBP11.15□□□□□ -0.63
CPSF7-216ENST00000536548 PREX2Q70Z35 1606 aa11.13□□□□□ -0.63
CPSF7-216ENST00000536548 TROQ12816 1431 aaPredicted RBP11.13□□□□□ -0.63
CPSF7-216ENST00000536548 TRIM52Q96A61 297 aa11.13□□□□□ -0.63
CPSF7-216ENST00000536548 CDK11AQ9UQ88 783 aaPredicted RBP11.13□□□□□ -0.63
CPSF7-216ENST00000536548 XIRP1Q702N8 1843 aaKnown RBP11.13□□□□□ -0.63
CPSF7-216ENST00000536548 IQGAP1P46940 1657 aa11.13□□□□□ -0.63
CPSF7-216ENST00000536548 LRRIQ1Q96JM4 1722 aa11.12□□□□□ -0.63
CPSF7-216ENST00000536548 MED14O60244 1454 aa11.12□□□□□ -0.63
CPSF7-216ENST00000536548 SYNMO15061 1565 aa11.11□□□□□ -0.63
CPSF7-216ENST00000536548 PLXNC1O60486 1568 aa11.11□□□□□ -0.63
CPSF7-216ENST00000536548 SPAG9O60271 1321 aaKnown RBP11.1□□□□□ -0.63
CPSF7-216ENST00000536548 DEPDC5O75140 1603 aa11.1□□□□□ -0.63
CPSF7-216ENST00000536548 HNRNPMP52272 730 aaKnown RBP eCLIP11.1□□□□□ -0.63
CPSF7-216ENST00000536548 ZNF777Q9ULD5 760 aaPredicted RBP11.1□□□□□ -0.63
CPSF7-216ENST00000536548 TNRQ92752 1358 aa11.1□□□□□ -0.63
CPSF7-216ENST00000536548 A2MP01023 1474 aa11.1□□□□□ -0.63
CPSF7-216ENST00000536548 CDC42BPAQ5VT25 1732 aa11.09□□□□□ -0.63
CPSF7-216ENST00000536548 THEMISQ8N1K5 641 aaPredicted RBP11.09□□□□□ -0.63
CPSF7-216ENST00000536548 ANP32EQ9BTT0 268 aa11.09□□□□□ -0.63
CPSF7-216ENST00000536548 ATP7AQ04656 1500 aa11.08□□□□□ -0.64
CPSF7-216ENST00000536548 SYCP2Q9BX26 1530 aa11.08□□□□□ -0.64
CPSF7-216ENST00000536548 FAM135BQ49AJ0 1406 aa11.08□□□□□ -0.64
CPSF7-216ENST00000536548 RRBP1Q9P2E9 1410 aaKnown RBP11.08□□□□□ -0.64
CPSF7-216ENST00000536548 ROBO1Q9Y6N7 1651 aa11.08□□□□□ -0.64
CPSF7-216ENST00000536548 UGGT1Q9NYU2 1555 aa11.07□□□□□ -0.64
CPSF7-216ENST00000536548 ZC3H13Q5T200 1668 aaKnown RBP11.06□□□□□ -0.64
CPSF7-216ENST00000536548 TSHZ2Q9NRE2 1034 aa11.06□□□□□ -0.64
CPSF7-216ENST00000536548 INO80Q9ULG1 1556 aaPredicted RBP11.06□□□□□ -0.64
CPSF7-216ENST00000536548 FAM135AQ9P2D6 1515 aa11.04□□□□□ -0.64
CPSF7-216ENST00000536548 RBM33Q96EV2 1170 aaKnown RBP11.03□□□□□ -0.64
CPSF7-216ENST00000536548 PZPP20742 1482 aa11.03□□□□□ -0.64
CPSF7-216ENST00000536548 FMN1Q68DA7 1419 aa11.02□□□□□ -0.64
CPSF7-216ENST00000536548 MIA2Q96PC5 1412 aa11.02□□□□□ -0.64
CPSF7-216ENST00000536548 LRP6O75581 1613 aa11.02□□□□□ -0.65
CPSF7-216ENST00000536548 EP400Q96L91 3159 aa11.02□□□□□ -0.65
CPSF7-216ENST00000536548 ADGBQ8N7X0 1667 aa11.01□□□□□ -0.65
CPSF7-216ENST00000536548 PHLPP1O60346 1717 aa11.01□□□□□ -0.65
CPSF7-216ENST00000536548 NLRP1Q9C000 1473 aa11.01□□□□□ -0.65
CPSF7-216ENST00000536548 CCNB3Q8WWL7 1395 aa11□□□□□ -0.65
CPSF7-216ENST00000536548 RXRBP28702 533 aa10.99□□□□□ -0.65
CPSF7-216ENST00000536548 ZNF772Q68DY9 489 aaPredicted RBP10.99□□□□□ -0.65
CPSF7-216ENST00000536548 JCADQ9P266 1359 aa10.99□□□□□ -0.65
CPSF7-216ENST00000536548 KIF3BO15066 747 aa10.98□□□□□ -0.65
CPSF7-216ENST00000536548 NEFLP07196 543 aa10.98□□□□□ -0.65
CPSF7-216ENST00000536548 LTKP29376 864 aa10.98□□□□□ -0.65
CPSF7-216ENST00000536548 MEX3CQ5U5Q3 659 aaKnown RBP10.98□□□□□ -0.65
CPSF7-216ENST00000536548 WASHC2CQ9Y4E1 1318 aa10.98□□□□□ -0.65
CPSF7-216ENST00000536548 TMEM94Q12767 1356 aa10.98□□□□□ -0.65
CPSF7-216ENST00000536548 ARHGAP35Q9NRY4 1499 aa10.98□□□□□ -0.65
CPSF7-216ENST00000536548 SETBP1Q9Y6X0 1596 aa10.98□□□□□ -0.65
CPSF7-216ENST00000536548 TIMELESSQ9UNS1 1208 aa10.97□□□□□ -0.65
CPSF7-216ENST00000536548 MAP3K1Q13233 1512 aa10.97□□□□□ -0.65
CPSF7-216ENST00000536548 KDM5DQ9BY66 1539 aa10.97□□□□□ -0.65
CPSF7-216ENST00000536548 GPATCH8Q9UKJ3 1502 aaKnown RBP10.97□□□□□ -0.65
CPSF7-216ENST00000536548 COL16A1Q07092 1604 aaPredicted RBP10.95□□□□□ -0.66
CPSF7-216ENST00000536548 SCAF11Q99590 1463 aaKnown RBP10.94□□□□□ -0.66
CPSF7-216ENST00000536548 KIAA1107Q9UPP5 1409 aa10.94□□□□□ -0.66
CPSF7-216ENST00000536548 CFAP65Q6ZU64 1925 aaKnown RBP10.94□□□□□ -0.66
CPSF7-216ENST00000536548 DHX29Q7Z478 1369 aaKnown RBP10.94□□□□□ -0.66
CPSF7-216ENST00000536548 TXNDC2Q86VQ3 553 aa10.94□□□□□ -0.66
CPSF7-216ENST00000536548 UBR1Q8IWV7 1749 aa10.94□□□□□ -0.66
CPSF7-216ENST00000536548 ZNF644Q9H582 1327 aaPredicted RBP10.93□□□□□ -0.66
CPSF7-216ENST00000536548 CFDP1Q9UEE9 299 aaPredicted RBP10.93□□□□□ -0.66
CPSF7-216ENST00000536548 CDK12Q9NYV4 1490 aaPredicted RBP10.93□□□□□ -0.66
CPSF7-216ENST00000536548 CCER2I3L3R5 266 aa10.92□□□□□ -0.66
CPSF7-216ENST00000536548 KANK4Q5T7N3 995 aaPredicted RBP10.92□□□□□ -0.66
CPSF7-216ENST00000536548 PROSER2Q86WR7 435 aaPredicted RBP10.92□□□□□ -0.66
CPSF7-216ENST00000536548 SLAIN2Q9P270 581 aa10.92□□□□□ -0.66
CPSF7-216ENST00000536548 ZRANB1Q9UGI0 708 aa10.92□□□□□ -0.66
CPSF7-216ENST00000536548 RGS12O14924 1447 aa10.92□□□□□ -0.66
CPSF7-216ENST00000536548 SPATA31A6Q5VVP1 1343 aa10.91□□□□□ -0.66
CPSF7-216ENST00000536548 NUTM2BA6NNL0 878 aaPredicted RBP10.91□□□□□ -0.66
CPSF7-216ENST00000536548 NUTM2EB1AL46 878 aaPredicted RBP10.91□□□□□ -0.66
CPSF7-216ENST00000536548 NUTM2DQ5VT03 806 aaPredicted RBP10.91□□□□□ -0.66
CPSF7-216ENST00000536548 NUTM2AQ8IVF1 878 aaPredicted RBP10.91□□□□□ -0.66
CPSF7-216ENST00000536548 NCOA2Q15596 1464 aa10.9□□□□□ -0.66
CPSF7-216ENST00000536548 LRRC9Q6ZRR7 1453 aa10.9□□□□□ -0.66
CPSF7-216ENST00000536548 PLEKHH2Q8IVE3 1493 aa10.9□□□□□ -0.66
CPSF7-216ENST00000536548 SETD5Q9C0A6 1442 aa10.9□□□□□ -0.66
CPSF7-216ENST00000536548 RAB3GAP2Q9H2M9 1393 aa10.9□□□□□ -0.67
CPSF7-216ENST00000536548 AFF2P51816 1311 aa10.89□□□□□ -0.67
CPSF7-216ENST00000536548 FKBP8Q14318 412 aa10.89□□□□□ -0.67
CPSF7-216ENST00000536548 CCDC18Q5T9S5 1454 aa10.88□□□□□ -0.67
CPSF7-216ENST00000536548 ARHGAP23Q9P227 1491 aa10.88□□□□□ -0.67
CPSF7-216ENST00000536548 KCNA6P17658 529 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms