RNA–Protein interactions for RNA: ENST00000535810.1

CHD4-204, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2

Gene CHD4, Length 607 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-204ENST00000535810 FOXD4L1Q9NU39 408 aa13.88□□□□□ -0.19
CHD4-204ENST00000535810 C3P01024 1663 aa13.88□□□□□ -0.19
CHD4-204ENST00000535810 ESF1Q9H501 851 aaKnown RBP13.87□□□□□ -0.19
CHD4-204ENST00000535810 PREX1Q8TCU6 1659 aa13.86□□□□□ -0.19
CHD4-204ENST00000535810 DHX29Q7Z478 1369 aaKnown RBP13.85□□□□□ -0.19
CHD4-204ENST00000535810 MROH2AA6NES4 1674 aa13.85□□□□□ -0.19
CHD4-204ENST00000535810 MAST1Q9Y2H9 1570 aa13.84□□□□□ -0.19
CHD4-204ENST00000535810 TSPY4P0CV99 314 aa13.83□□□□□ -0.2
CHD4-204ENST00000535810 TSPY10P0CW01 314 aa13.83□□□□□ -0.2
CHD4-204ENST00000535810 ZMYM3Q14202 1370 aa13.83□□□□□ -0.2
CHD4-204ENST00000535810 UHRF1BP1Q6BDS2 1440 aa13.82□□□□□ -0.2
CHD4-204ENST00000535810 FGD6Q6ZV73 1430 aa13.82□□□□□ -0.2
CHD4-204ENST00000535810 CLTCQ00610 1675 aaKnown RBP13.82□□□□□ -0.2
CHD4-204ENST00000535810 GGT6Q6P531 493 aa13.82□□□□□ -0.2
CHD4-204ENST00000535810 PTPN23Q9H3S7 1636 aa13.82□□□□□ -0.2
CHD4-204ENST00000535810 SETD1BQ9UPS6 1966 aaKnown RBP13.82□□□□□ -0.2
CHD4-204ENST00000535810 DCAF8L1A6NGE4 600 aa13.81□□□□□ -0.2
CHD4-204ENST00000535810 NPATQ14207 1427 aa13.81□□□□□ -0.2
CHD4-204ENST00000535810 TCOF1Q13428 1488 aaKnown RBP13.8□□□□□ -0.2
CHD4-204ENST00000535810 SHANK2Q9UPX8 1470 aa13.8□□□□□ -0.2
CHD4-204ENST00000535810 KIF3BO15066 747 aa13.79□□□□□ -0.2
CHD4-204ENST00000535810 SLC4A2P04920 1241 aa13.79□□□□□ -0.2
CHD4-204ENST00000535810 PTPRTO14522 1441 aa13.79□□□□□ -0.2
CHD4-204ENST00000535810 ABCC5O15440 1437 aa13.79□□□□□ -0.2
CHD4-204ENST00000535810 CROCC2H7BZ55 1655 aa13.79□□□□□ -0.2
CHD4-204ENST00000535810 PTPRKQ15262 1439 aa13.78□□□□□ -0.2
CHD4-204ENST00000535810 IQSEC2Q5JU85 1478 aa13.78□□□□□ -0.2
CHD4-204ENST00000535810 FAM135AQ9P2D6 1515 aa13.78□□□□□ -0.2
CHD4-204ENST00000535810 DNMT1P26358 1616 aaKnown RBP13.77□□□□□ -0.21
CHD4-204ENST00000535810 KDM5DQ9BY66 1539 aa13.77□□□□□ -0.21
CHD4-204ENST00000535810 RNF17Q9BXT8 1623 aaKnown RBP13.76□□□□□ -0.21
CHD4-204ENST00000535810 DAPK1P53355 1430 aa13.76□□□□□ -0.21
CHD4-204ENST00000535810 EIF2AK4Q9P2K8 1649 aaKnown RBP13.75□□□□□ -0.21
CHD4-204ENST00000535810 DUOX2Q9NRD8 1548 aa13.74□□□□□ -0.21
CHD4-204ENST00000535810 MYO3AQ8NEV4 1616 aa13.74□□□□□ -0.21
CHD4-204ENST00000535810 STRCQ7RTU9 1775 aa13.73□□□□□ -0.21
CHD4-204ENST00000535810 KIF15Q9NS87 1388 aa13.73□□□□□ -0.21
CHD4-204ENST00000535810 PZPP20742 1482 aa13.73□□□□□ -0.21
CHD4-204ENST00000535810 MROH1Q8NDA8 1641 aa13.72□□□□□ -0.21
CHD4-204ENST00000535810 WASHC2CQ9Y4E1 1318 aa13.72□□□□□ -0.21
CHD4-204ENST00000535810 ZNF142P52746 1687 aaPredicted RBP13.72□□□□□ -0.21
CHD4-204ENST00000535810 LTBP4Q8N2S1 1624 aa13.72□□□□□ -0.21
CHD4-204ENST00000535810 ABCC3O15438 1527 aa13.71□□□□□ -0.21
CHD4-204ENST00000535810 ERBINQ96RT1 1412 aa13.71□□□□□ -0.22
CHD4-204ENST00000535810 CEP170BQ9Y4F5 1589 aaPredicted RBP13.71□□□□□ -0.22
CHD4-204ENST00000535810 RRP7BPQ9NSQ0 103 aa13.7□□□□□ -0.22
CHD4-204ENST00000535810 NCOA1Q15788 1441 aa13.7□□□□□ -0.22
CHD4-204ENST00000535810 ZC3H13Q5T200 1668 aaKnown RBP13.69□□□□□ -0.22
CHD4-204ENST00000535810 ANKRD30AQ9BXX3 1397 aa13.69□□□□□ -0.22
CHD4-204ENST00000535810 PRDM15P57071 1507 aaPredicted RBP13.69□□□□□ -0.22
CHD4-204ENST00000535810 CAMSAP1Q5T5Y3 1602 aa13.68□□□□□ -0.22
CHD4-204ENST00000535810 FAM50AQ14320 339 aaKnown RBP13.68□□□□□ -0.22
CHD4-204ENST00000535810 FBXO31Q5XUX0 539 aaPredicted RBP13.68□□□□□ -0.22
CHD4-204ENST00000535810 TNRQ92752 1358 aa13.68□□□□□ -0.22
CHD4-204ENST00000535810 ADGRL2O95490 1459 aa13.67□□□□□ -0.22
CHD4-204ENST00000535810 CHIC2Q9UKJ5 165 aa13.67□□□□□ -0.22
CHD4-204ENST00000535810 A2ML1A8K2U0 1454 aa13.67□□□□□ -0.22
CHD4-204ENST00000535810 DEPDC5O75140 1603 aa13.66□□□□□ -0.22
CHD4-204ENST00000535810 UBAP1LF5GYI3 381 aa13.66□□□□□ -0.22
CHD4-204ENST00000535810 PLA2R1Q13018 1463 aa13.66□□□□□ -0.22
CHD4-204ENST00000535810 CEP152O94986 1710 aa13.64□□□□□ -0.23
CHD4-204ENST00000535810 NLRP1Q9C000 1473 aa13.63□□□□□ -0.23
CHD4-204ENST00000535810 PPARGC1BQ86YN6 1023 aaKnown RBP13.63□□□□□ -0.23
CHD4-204ENST00000535810 ERVK-7P63135 1459 aa13.62□□□□□ -0.23
CHD4-204ENST00000535810 ARHGAP31Q2M1Z3 1444 aa13.61□□□□□ -0.23
CHD4-204ENST00000535810 VWDEQ8N2E2 1590 aa13.61□□□□□ -0.23
CHD4-204ENST00000535810 NCKAP5LQ9HCH0 1330 aa13.61□□□□□ -0.23
CHD4-204ENST00000535810 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.6□□□□□ -0.237e-11■■■□□ 18.6
CHD4-204ENST00000535810 ANKRD50Q9ULJ7 1429 aa13.6□□□□□ -0.23
CHD4-204ENST00000535810 LMTK2Q8IWU2 1503 aa13.59□□□□□ -0.23
CHD4-204ENST00000535810 PKD2Q13563 968 aa13.59□□□□□ -0.23
CHD4-204ENST00000535810 ZNF335Q9H4Z2 1342 aaPredicted RBP13.59□□□□□ -0.23
CHD4-204ENST00000535810 ROCK1Q13464 1354 aa13.58□□□□□ -0.23
CHD4-204ENST00000535810 KANK1Q14678 1352 aa13.58□□□□□ -0.23
CHD4-204ENST00000535810 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.58□□□□□ -0.23
CHD4-204ENST00000535810 UGGT1Q9NYU2 1555 aa13.58□□□□□ -0.23
CHD4-204ENST00000535810 NEURL4Q96JN8 1562 aa13.56□□□□□ -0.24
CHD4-204ENST00000535810 EFCAB6Q5THR3 1501 aa13.55□□□□□ -0.24
CHD4-204ENST00000535810 HSPA1LP34931 641 aa13.55□□□□□ -0.24
CHD4-204ENST00000535810 POLR1AO95602 1720 aaPredicted RBP13.55□□□□□ -0.24
CHD4-204ENST00000535810 RRBP1Q9P2E9 1410 aaKnown RBP13.55□□□□□ -0.24
CHD4-204ENST00000535810 CFAP65Q6ZU64 1925 aaKnown RBP13.54□□□□□ -0.24
CHD4-204ENST00000535810 THEMISQ8N1K5 641 aaPredicted RBP13.54□□□□□ -0.24
CHD4-204ENST00000535810 UNC13BO14795 1591 aa13.54□□□□□ -0.24
CHD4-204ENST00000535810 ITGAEP38570 1179 aa13.53□□□□□ -0.24
CHD4-204ENST00000535810 MED1Q15648 1581 aaPredicted RBP13.52□□□□□ -0.25
CHD4-204ENST00000535810 UBR1Q8IWV7 1749 aa13.52□□□□□ -0.25
CHD4-204ENST00000535810 MED14O60244 1454 aa13.51□□□□□ -0.25
CHD4-204ENST00000535810 NOS1P29475 1434 aa13.51□□□□□ -0.25
CHD4-204ENST00000535810 TOM1O60784 492 aa13.51□□□□□ -0.25
CHD4-204ENST00000535810 MYCNP04198 464 aaPredicted RBP13.51□□□□□ -0.25
CHD4-204ENST00000535810 ANKLE2Q86XL3 938 aa13.51□□□□□ -0.25
CHD4-204ENST00000535810 SYNMO15061 1565 aa13.5□□□□□ -0.25
CHD4-204ENST00000535810 RPRD2Q5VT52 1461 aaKnown RBP13.5□□□□□ -0.25
CHD4-204ENST00000535810 TET3O43151 1660 aa13.5□□□□□ -0.25
CHD4-204ENST00000535810 NPHP4O75161 1426 aaPredicted RBP13.49□□□□□ -0.25
CHD4-204ENST00000535810 PIK3C2BO00750 1634 aa13.49□□□□□ -0.25
CHD4-204ENST00000535810 SLIT1O75093 1534 aa13.49□□□□□ -0.25
CHD4-204ENST00000535810 ARHGAP23Q9P227 1491 aa13.48□□□□□ -0.25
CHD4-204ENST00000535810 PIP4K2BP78356 416 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms