RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 ABCC1P33527 1531 aa11.04□□□□□ -0.64
CD44-237ENST00000534082 KIDINS220Q9ULH0 1771 aa11.03□□□□□ -0.64
CD44-237ENST00000534082 CLTCQ00610 1675 aaKnown RBP11.02□□□□□ -0.64
CD44-237ENST00000534082 RGS17Q9UGC6 210 aaPredicted RBP11.02□□□□□ -0.65
CD44-237ENST00000534082 NEURL4Q96JN8 1562 aa11.02□□□□□ -0.65
CD44-237ENST00000534082 ITSN2Q9NZM3 1697 aa11.01□□□□□ -0.65
CD44-237ENST00000534082 POLR1AO95602 1720 aaPredicted RBP11.01□□□□□ -0.65
CD44-237ENST00000534082 TROQ12816 1431 aaPredicted RBP11□□□□□ -0.65
CD44-237ENST00000534082 A2ML1A8K2U0 1454 aa11□□□□□ -0.65
CD44-237ENST00000534082 VWDEQ8N2E2 1590 aa10.99□□□□□ -0.65
CD44-237ENST00000534082 PREX2Q70Z35 1606 aa10.99□□□□□ -0.65
CD44-237ENST00000534082 CDC42BPBQ9Y5S2 1711 aa10.99□□□□□ -0.65
CD44-237ENST00000534082 CLIP1P30622 1438 aa10.99□□□□□ -0.65
CD44-237ENST00000534082 DNMT1P26358 1616 aaKnown RBP10.98□□□□□ -0.65
CD44-237ENST00000534082 CDK11AQ9UQ88 783 aaPredicted RBP10.98□□□□□ -0.65
CD44-237ENST00000534082 RNF17Q9BXT8 1623 aaKnown RBP10.97□□□□□ -0.65
CD44-237ENST00000534082 PLXNC1O60486 1568 aa10.96□□□□□ -0.65
CD44-237ENST00000534082 SAMD9LQ8IVG5 1584 aa10.96□□□□□ -0.65
CD44-237ENST00000534082 ATP1B4Q9UN42 357 aaPredicted RBP10.96□□□□□ -0.65
CD44-237ENST00000534082 SETD1AO15047 1707 aaKnown RBP10.95□□□□□ -0.66
CD44-237ENST00000534082 POTEAQ6S8J7 498 aa10.94□□□□□ -0.66
CD44-237ENST00000534082 SYNMO15061 1565 aa10.94□□□□□ -0.66
CD44-237ENST00000534082 SRCAPQ6ZRS2 3230 aa10.93□□□□□ -0.66
CD44-237ENST00000534082 FMN1Q68DA7 1419 aa10.92□□□□□ -0.66
CD44-237ENST00000534082 ATP7AQ04656 1500 aa10.92□□□□□ -0.66
CD44-237ENST00000534082 LRRC7Q96NW7 1537 aa10.92□□□□□ -0.66
CD44-237ENST00000534082 A2MP01023 1474 aa10.92□□□□□ -0.66
CD44-237ENST00000534082 NPHP4O75161 1426 aaPredicted RBP10.92□□□□□ -0.66
CD44-237ENST00000534082 SPAG9O60271 1321 aaKnown RBP10.91□□□□□ -0.66
CD44-237ENST00000534082 SYCP2Q9BX26 1530 aa10.91□□□□□ -0.66
CD44-237ENST00000534082 INO80Q9ULG1 1556 aaPredicted RBP10.9□□□□□ -0.66
CD44-237ENST00000534082 MED14O60244 1454 aa10.9□□□□□ -0.66
CD44-237ENST00000534082 GGT6Q6P531 493 aa10.9□□□□□ -0.66
CD44-237ENST00000534082 DEPDC5O75140 1603 aa10.9□□□□□ -0.66
CD44-237ENST00000534082 TNRQ92752 1358 aa10.9□□□□□ -0.67
CD44-237ENST00000534082 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.9□□□□□ -0.67
CD44-237ENST00000534082 STRCP1A6NGW2 1772 aa10.89□□□□□ -0.67
CD44-237ENST00000534082 LRRIQ1Q96JM4 1722 aa10.89□□□□□ -0.67
CD44-237ENST00000534082 IQGAP1P46940 1657 aa10.89□□□□□ -0.67
CD44-237ENST00000534082 CDC42BPAQ5VT25 1732 aa10.88□□□□□ -0.67
CD44-237ENST00000534082 POTEHQ6S545 545 aa10.88□□□□□ -0.67
CD44-237ENST00000534082 ANKLE2Q86XL3 938 aa10.88□□□□□ -0.67
CD44-237ENST00000534082 EEA1Q15075 1411 aa10.86□□□□□ -0.67
CD44-237ENST00000534082 PZPP20742 1482 aa10.86□□□□□ -0.67
CD44-237ENST00000534082 FAM135AQ9P2D6 1515 aa10.85□□□□□ -0.67
CD44-237ENST00000534082 AKT1S1Q96B36 256 aa10.85□□□□□ -0.67
CD44-237ENST00000534082 ZNF777Q9ULD5 760 aaPredicted RBP10.85□□□□□ -0.67
CD44-237ENST00000534082 ARHGAP35Q9NRY4 1499 aa10.85□□□□□ -0.67
CD44-237ENST00000534082 UGGT1Q9NYU2 1555 aa10.85□□□□□ -0.67
CD44-237ENST00000534082 FBXO31Q5XUX0 539 aaPredicted RBP10.84□□□□□ -0.67
CD44-237ENST00000534082 NLRP1Q9C000 1473 aa10.84□□□□□ -0.67
CD44-237ENST00000534082 ADGBQ8N7X0 1667 aa10.84□□□□□ -0.67
CD44-237ENST00000534082 HNRNPMP52272 730 aaKnown RBP eCLIP10.83□□□□□ -0.68
CD44-237ENST00000534082 THEMISQ8N1K5 641 aaPredicted RBP10.83□□□□□ -0.68
CD44-237ENST00000534082 KDM5DQ9BY66 1539 aa10.83□□□□□ -0.68
CD44-237ENST00000534082 CCDC18Q5T9S5 1454 aa10.82□□□□□ -0.68
CD44-237ENST00000534082 UPF1Q92900 1129 aaKnown RBP eCLIP10.82□□□□□ -0.68
CD44-237ENST00000534082 FAM135BQ49AJ0 1406 aa10.82□□□□□ -0.68
CD44-237ENST00000534082 KIAA1107Q9UPP5 1409 aa10.82□□□□□ -0.68
CD44-237ENST00000534082 PLEKHH2Q8IVE3 1493 aa10.81□□□□□ -0.68
CD44-237ENST00000534082 MKRN4PQ13434 485 aaPredicted RBP10.81□□□□□ -0.68
CD44-237ENST00000534082 ZC3H13Q5T200 1668 aaKnown RBP10.81□□□□□ -0.68
CD44-237ENST00000534082 GPATCH8Q9UKJ3 1502 aaKnown RBP10.8□□□□□ -0.68
CD44-237ENST00000534082 MIA2Q96PC5 1412 aa10.8□□□□□ -0.68
CD44-237ENST00000534082 XIRP1Q702N8 1843 aaKnown RBP10.79□□□□□ -0.68
CD44-237ENST00000534082 CHRDL2Q6WN34 429 aa10.78□□□□□ -0.68
CD44-237ENST00000534082 ROBO1Q9Y6N7 1651 aa10.78□□□□□ -0.68
CD44-237ENST00000534082 REM2Q8IYK8 340 aaPredicted RBP10.76□□□□□ -0.69
CD44-237ENST00000534082 DHX29Q7Z478 1369 aaKnown RBP10.76□□□□□ -0.69
CD44-237ENST00000534082 CASKIN1Q8WXD9 1431 aa10.75□□□□□ -0.69
CD44-237ENST00000534082 SPDYE2BA6NHP3 402 aa10.75□□□□□ -0.69
CD44-237ENST00000534082 SPDYE6P0CI01 402 aa10.75□□□□□ -0.69
CD44-237ENST00000534082 SPDYE2Q495Y8 402 aa10.75□□□□□ -0.69
CD44-237ENST00000534082 SCAF11Q99590 1463 aaKnown RBP10.74□□□□□ -0.69
CD44-237ENST00000534082 TRIM52Q96A61 297 aa10.74□□□□□ -0.69
CD44-237ENST00000534082 CFDP1Q9UEE9 299 aaPredicted RBP10.74□□□□□ -0.69
CD44-237ENST00000534082 WASHC2CQ9Y4E1 1318 aa10.74□□□□□ -0.69
CD44-237ENST00000534082 LRRC9Q6ZRR7 1453 aa10.74□□□□□ -0.69
CD44-237ENST00000534082 KIF3BO15066 747 aa10.73□□□□□ -0.69
CD44-237ENST00000534082 JCADQ9P266 1359 aa10.73□□□□□ -0.69
CD44-237ENST00000534082 RTEL1-TNFRSF6BF6WH68 1400 aa10.73□□□□□ -0.69
CD44-237ENST00000534082 UBTFP17480 764 aaKnown RBP10.72□□□□□ -0.69
CD44-237ENST00000534082 TMEM94Q12767 1356 aa10.72□□□□□ -0.69
CD44-237ENST00000534082 MAP3K1Q13233 1512 aa10.72□□□□□ -0.69
CD44-237ENST00000534082 LRP6O75581 1613 aa10.72□□□□□ -0.69
CD44-237ENST00000534082 PHLPP1O60346 1717 aa10.71□□□□□ -0.69
CD44-237ENST00000534082 CCNB3Q8WWL7 1395 aa10.71□□□□□ -0.69
CD44-237ENST00000534082 MBD5Q9P267 1494 aa10.71□□□□□ -0.69
CD44-237ENST00000534082 UBR1Q8IWV7 1749 aa10.7□□□□□ -0.7
CD44-237ENST00000534082 ERVK-7P63135 1459 aa10.7□□□□□ -0.7
CD44-237ENST00000534082 FYCO1Q9BQS8 1478 aa10.7□□□□□ -0.7
CD44-237ENST00000534082 ZNF692Q9BU19 519 aaPredicted RBP10.7□□□□□ -0.7
CD44-237ENST00000534082 SLIT1O75093 1534 aa10.69□□□□□ -0.7
CD44-237ENST00000534082 ARHGAP23Q9P227 1491 aa10.69□□□□□ -0.7
CD44-237ENST00000534082 ZNF772Q68DY9 489 aaPredicted RBP10.69□□□□□ -0.7
CD44-237ENST00000534082 NCOA2Q15596 1464 aa10.68□□□□□ -0.7
CD44-237ENST00000534082 CDK12Q9NYV4 1490 aaPredicted RBP10.68□□□□□ -0.7
CD44-237ENST00000534082 ZNF644Q9H582 1327 aaPredicted RBP10.68□□□□□ -0.7
CD44-237ENST00000534082 MEX3CQ5U5Q3 659 aaKnown RBP10.68□□□□□ -0.7
CD44-237ENST00000534082 COL16A1Q07092 1604 aaPredicted RBP10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms