RNA–Protein interactions for RNA: ENST00000533818.5

CSDE1-215, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-215ENST00000533818 DEPDC5O75140 1603 aa17.83■□□□□ 0.44
CSDE1-215ENST00000533818 FAM135AQ9P2D6 1515 aa17.82■□□□□ 0.44
CSDE1-215ENST00000533818 FMN1Q68DA7 1419 aa17.81■□□□□ 0.44
CSDE1-215ENST00000533818 PREX2Q70Z35 1606 aa17.81■□□□□ 0.44
CSDE1-215ENST00000533818 PLXNC1O60486 1568 aa17.81■□□□□ 0.44
CSDE1-215ENST00000533818 IQGAP1P46940 1657 aa17.8■□□□□ 0.44
CSDE1-215ENST00000533818 UGGT1Q9NYU2 1555 aa17.79■□□□□ 0.44
CSDE1-215ENST00000533818 ATP7AQ04656 1500 aa17.78■□□□□ 0.44
CSDE1-215ENST00000533818 ZNF772Q68DY9 489 aaPredicted RBP17.78■□□□□ 0.44
CSDE1-215ENST00000533818 MIA2Q96PC5 1412 aa17.78■□□□□ 0.44
CSDE1-215ENST00000533818 NLRP1Q9C000 1473 aa17.76■□□□□ 0.43
CSDE1-215ENST00000533818 PZPP20742 1482 aa17.75■□□□□ 0.43
CSDE1-215ENST00000533818 SYCP2Q9BX26 1530 aa17.74■□□□□ 0.43
CSDE1-215ENST00000533818 RXRBP28702 533 aa17.74■□□□□ 0.43
CSDE1-215ENST00000533818 JCADQ9P266 1359 aa17.74■□□□□ 0.43
CSDE1-215ENST00000533818 MEX3CQ5U5Q3 659 aaKnown RBP17.73■□□□□ 0.43
CSDE1-215ENST00000533818 WASHC2CQ9Y4E1 1318 aa17.72■□□□□ 0.43
CSDE1-215ENST00000533818 INO80Q9ULG1 1556 aaPredicted RBP17.7■□□□□ 0.42
CSDE1-215ENST00000533818 KIF3BO15066 747 aa17.69■□□□□ 0.42
CSDE1-215ENST00000533818 KDM5DQ9BY66 1539 aa17.68■□□□□ 0.42
CSDE1-215ENST00000533818 ROBO1Q9Y6N7 1651 aa17.68■□□□□ 0.42
CSDE1-215ENST00000533818 KIAA1107Q9UPP5 1409 aa17.68■□□□□ 0.42
CSDE1-215ENST00000533818 TMEM94Q12767 1356 aa17.67■□□□□ 0.42
CSDE1-215ENST00000533818 CDC42BPAQ5VT25 1732 aa17.67■□□□□ 0.42
CSDE1-215ENST00000533818 ZRANB1Q9UGI0 708 aa17.66■□□□□ 0.42
CSDE1-215ENST00000533818 DHX29Q7Z478 1369 aaKnown RBP17.66■□□□□ 0.42
CSDE1-215ENST00000533818 XIRP1Q702N8 1843 aaKnown RBP17.65■□□□□ 0.42
CSDE1-215ENST00000533818 CFDP1Q9UEE9 299 aaPredicted RBP17.65■□□□□ 0.42
CSDE1-215ENST00000533818 SPATA31A6Q5VVP1 1343 aa17.65■□□□□ 0.42
CSDE1-215ENST00000533818 PLEKHH2Q8IVE3 1493 aa17.64■□□□□ 0.41
CSDE1-215ENST00000533818 LTKP29376 864 aa17.64■□□□□ 0.41
CSDE1-215ENST00000533818 FOXD1Q16676 465 aa17.64■□□□□ 0.41
CSDE1-215ENST00000533818 TXNDC2Q86VQ3 553 aa17.64■□□□□ 0.41
CSDE1-215ENST00000533818 GPATCH8Q9UKJ3 1502 aaKnown RBP17.63■□□□□ 0.41
CSDE1-215ENST00000533818 CHIC1Q5VXU3 224 aa17.63■□□□□ 0.41
CSDE1-215ENST00000533818 PROSER2Q86WR7 435 aaPredicted RBP17.63■□□□□ 0.41
CSDE1-215ENST00000533818 RBM33Q96EV2 1170 aaKnown RBP17.63■□□□□ 0.41
CSDE1-215ENST00000533818 ZC3H13Q5T200 1668 aaKnown RBP17.63■□□□□ 0.41
CSDE1-215ENST00000533818 ADGBQ8N7X0 1667 aa17.63■□□□□ 0.41
CSDE1-215ENST00000533818 SCAF11Q99590 1463 aaKnown RBP17.63■□□□□ 0.41
CSDE1-215ENST00000533818 CDK12Q9NYV4 1490 aaPredicted RBP17.63■□□□□ 0.41
CSDE1-215ENST00000533818 LRP6O75581 1613 aa17.62■□□□□ 0.41
CSDE1-215ENST00000533818 SLAIN2Q9P270 581 aa17.62■□□□□ 0.41
CSDE1-215ENST00000533818 LRRC9Q6ZRR7 1453 aa17.62■□□□□ 0.41
CSDE1-215ENST00000533818 ARHGAP35Q9NRY4 1499 aa17.62■□□□□ 0.41
CSDE1-215ENST00000533818 PHLPP1O60346 1717 aa17.59■□□□□ 0.41
CSDE1-215ENST00000533818 LRRIQ1Q96JM4 1722 aa17.59■□□□□ 0.41
CSDE1-215ENST00000533818 EEA1Q15075 1411 aa17.59■□□□□ 0.41
CSDE1-215ENST00000533818 NUTM2BA6NNL0 878 aaPredicted RBP17.58■□□□□ 0.4
CSDE1-215ENST00000533818 NUTM2EB1AL46 878 aaPredicted RBP17.58■□□□□ 0.4
CSDE1-215ENST00000533818 UBTFP17480 764 aaKnown RBP17.58■□□□□ 0.4
CSDE1-215ENST00000533818 NUTM2DQ5VT03 806 aaPredicted RBP17.58■□□□□ 0.4
CSDE1-215ENST00000533818 NUTM2AQ8IVF1 878 aaPredicted RBP17.58■□□□□ 0.4
CSDE1-215ENST00000533818 EID1Q9Y6B2 187 aa17.58■□□□□ 0.4
CSDE1-215ENST00000533818 KCNA6P17658 529 aa17.57■□□□□ 0.4
CSDE1-215ENST00000533818 CCDC18Q5T9S5 1454 aa17.56■□□□□ 0.4
CSDE1-215ENST00000533818 EHMT2Q96KQ7 1210 aa17.56■□□□□ 0.4
CSDE1-215ENST00000533818 RTEL1-TNFRSF6BF6WH68 1400 aa17.55■□□□□ 0.4
CSDE1-215ENST00000533818 FGD6Q6ZV73 1430 aa17.55■□□□□ 0.4
CSDE1-215ENST00000533818 MSH6P52701 1360 aa17.54■□□□□ 0.4
CSDE1-215ENST00000533818 ZNF644Q9H582 1327 aaPredicted RBP17.53■□□□□ 0.4
CSDE1-215ENST00000533818 MAP3K1Q13233 1512 aa17.53■□□□□ 0.4
CSDE1-215ENST00000533818 SETBP1Q9Y6X0 1596 aa17.53■□□□□ 0.4
CSDE1-215ENST00000533818 CCNB3Q8WWL7 1395 aa17.52■□□□□ 0.39
CSDE1-215ENST00000533818 AFF2P51816 1311 aa17.51■□□□□ 0.39
CSDE1-215ENST00000533818 ARHGAP23Q9P227 1491 aa17.5■□□□□ 0.39
CSDE1-215ENST00000533818 RGS12O14924 1447 aa17.5■□□□□ 0.39
CSDE1-215ENST00000533818 RBM6P78332 1123 aaKnown RBP17.5■□□□□ 0.39
CSDE1-215ENST00000533818 COL16A1Q07092 1604 aaPredicted RBP17.5■□□□□ 0.39
CSDE1-215ENST00000533818 NCOA2Q15596 1464 aa17.5■□□□□ 0.39
CSDE1-215ENST00000533818 CASKIN1Q8WXD9 1431 aa17.49■□□□□ 0.39
CSDE1-215ENST00000533818 QTRT2Q9H974 415 aaKnown RBP17.49■□□□□ 0.39
CSDE1-215ENST00000533818 ERVK-7P63135 1459 aa17.49■□□□□ 0.39
CSDE1-215ENST00000533818 SLIT1O75093 1534 aa17.48■□□□□ 0.39
CSDE1-215ENST00000533818 SLC26A8Q96RN1 970 aa17.48■□□□□ 0.39
CSDE1-215ENST00000533818 MBD5Q9P267 1494 aa17.48■□□□□ 0.39
CSDE1-215ENST00000533818 ATAD2Q6PL18 1390 aa17.47■□□□□ 0.39
CSDE1-215ENST00000533818 PRDM15P57071 1507 aaPredicted RBP17.47■□□□□ 0.39
CSDE1-215ENST00000533818 UBR1Q8IWV7 1749 aa17.46■□□□□ 0.39
CSDE1-215ENST00000533818 TMEM2Q9UHN6 1383 aa17.42■□□□□ 0.38
CSDE1-215ENST00000533818 NGLY1Q96IV0 654 aa17.42■□□□□ 0.38
CSDE1-215ENST00000533818 TIAM1Q13009 1591 aa17.41■□□□□ 0.38
CSDE1-215ENST00000533818 C8orf37Q96NL8 207 aa17.41■□□□□ 0.38
CSDE1-215ENST00000533818 STAG3Q9UJ98 1225 aa17.41■□□□□ 0.38
CSDE1-215ENST00000533818 NKTRP30414 1462 aaKnown RBP17.41■□□□□ 0.38
CSDE1-215ENST00000533818 ABCC3O15438 1527 aa17.41■□□□□ 0.38
CSDE1-215ENST00000533818 SHPRHQ149N8 1683 aa17.39■□□□□ 0.37
CSDE1-215ENST00000533818 CCDC125Q86Z20 511 aa17.38■□□□□ 0.37
CSDE1-215ENST00000533818 C14orf37Q86TY3 774 aa17.37■□□□□ 0.37
CSDE1-215ENST00000533818 BCANQ96GW7 911 aa17.37■□□□□ 0.37
CSDE1-215ENST00000533818 RSPH4AQ5TD94 716 aa17.36■□□□□ 0.37
CSDE1-215ENST00000533818 AHDC1Q5TGY3 1603 aaPredicted RBP17.35■□□□□ 0.37
CSDE1-215ENST00000533818 TET3O43151 1660 aa17.34■□□□□ 0.37
CSDE1-215ENST00000533818 CCDC141Q6ZP82 1450 aa17.34■□□□□ 0.37
CSDE1-215ENST00000533818 CADPS2Q86UW7 1296 aa17.34■□□□□ 0.37
CSDE1-215ENST00000533818 FYCO1Q9BQS8 1478 aa17.33■□□□□ 0.37
CSDE1-215ENST00000533818 ATF3P18847 181 aa17.33■□□□□ 0.36
CSDE1-215ENST00000533818 MTUS2Q5JR59 1369 aa17.32■□□□□ 0.36
CSDE1-215ENST00000533818 TSPY4P0CV99 314 aa17.32■□□□□ 0.36
CSDE1-215ENST00000533818 TSPY10P0CW01 314 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms