RNA–Protein interactions for RNA: ENST00000533309.5

TRIM3-213, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 1,647 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-213ENST00000533309 BCORL1Q5H9F3 1711 aa23.51■■□□□ 1.35
TRIM3-213ENST00000533309 IQGAP3Q86VI3 1631 aa23.5■■□□□ 1.35
TRIM3-213ENST00000533309 MPHOSPH9Q99550 1183 aa23.49■■□□□ 1.35
TRIM3-213ENST00000533309 NUP155O75694 1391 aa23.49■■□□□ 1.35
TRIM3-213ENST00000533309 MROH1Q8NDA8 1641 aa23.48■■□□□ 1.35
TRIM3-213ENST00000533309 RNF17Q9BXT8 1623 aaKnown RBP23.47■■□□□ 1.35
TRIM3-213ENST00000533309 ARHGEF40Q8TER5 1519 aa23.46■■□□□ 1.35
TRIM3-213ENST00000533309 FAM135AQ9P2D6 1515 aa23.46■■□□□ 1.35
TRIM3-213ENST00000533309 ZEB1P37275 1124 aaPredicted RBP23.45■■□□□ 1.34
TRIM3-213ENST00000533309 PRDM15P57071 1507 aaPredicted RBP23.45■■□□□ 1.34
TRIM3-213ENST00000533309 REREQ9P2R6 1566 aa23.44■■□□□ 1.34
TRIM3-213ENST00000533309 VWDEQ8N2E2 1590 aa23.43■■□□□ 1.34
TRIM3-213ENST00000533309 SLC4A1APQ9BWU0 796 aaKnown RBP23.43■■□□□ 1.34
TRIM3-213ENST00000533309 ATP10AO60312 1499 aa23.42■■□□□ 1.34
TRIM3-213ENST00000533309 KIF3BO15066 747 aa23.41■■□□□ 1.34
TRIM3-213ENST00000533309 SIGLEC1Q9BZZ2 1709 aa23.4■■□□□ 1.34
TRIM3-213ENST00000533309 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.38■■□□□ 1.33
TRIM3-213ENST00000533309 FOXD1Q16676 465 aa23.37■■□□□ 1.33
TRIM3-213ENST00000533309 TET3O43151 1660 aa23.35■■□□□ 1.33
TRIM3-213ENST00000533309 PKD2Q13563 968 aa23.35■■□□□ 1.33
TRIM3-213ENST00000533309 ANKRD30BQ9BXX2 1392 aa23.35■■□□□ 1.33
TRIM3-213ENST00000533309 AGLP35573 1532 aa23.35■■□□□ 1.33
TRIM3-213ENST00000533309 CEP152O94986 1710 aa23.34■■□□□ 1.33
TRIM3-213ENST00000533309 SIN3AQ96ST3 1273 aa23.33■■□□□ 1.33
TRIM3-213ENST00000533309 E9PCH4 1651 aa23.32■■□□□ 1.32
TRIM3-213ENST00000533309 LMTK2Q8IWU2 1503 aa23.31■■□□□ 1.32
TRIM3-213ENST00000533309 KANK1Q14678 1352 aa23.3■■□□□ 1.32
TRIM3-213ENST00000533309 EFCAB6Q5THR3 1501 aa23.27■■□□□ 1.32
TRIM3-213ENST00000533309 ZC3H13Q5T200 1668 aaKnown RBP23.27■■□□□ 1.32
TRIM3-213ENST00000533309 ABCC3O15438 1527 aa23.27■■□□□ 1.32
TRIM3-213ENST00000533309 GGT6Q6P531 493 aa23.26■■□□□ 1.31
TRIM3-213ENST00000533309 NEUROD1Q13562 356 aa23.25■■□□□ 1.31
TRIM3-213ENST00000533309 PLA2R1Q13018 1463 aa23.24■■□□□ 1.31
TRIM3-213ENST00000533309 RPRD2Q5VT52 1461 aaKnown RBP23.24■■□□□ 1.31
TRIM3-213ENST00000533309 CAMSAP1Q5T5Y3 1602 aa23.23■■□□□ 1.31
TRIM3-213ENST00000533309 SPHKAPQ2M3C7 1700 aa23.23■■□□□ 1.31
TRIM3-213ENST00000533309 TRPM2O94759 1503 aa23.17■■□□□ 1.3
TRIM3-213ENST00000533309 PTPRTO14522 1441 aa23.17■■□□□ 1.3
TRIM3-213ENST00000533309 WASHC2CQ9Y4E1 1318 aa23.16■■□□□ 1.3
TRIM3-213ENST00000533309 TIMELESSQ9UNS1 1208 aa23.16■■□□□ 1.3
TRIM3-213ENST00000533309 NPATQ14207 1427 aa23.15■■□□□ 1.3
TRIM3-213ENST00000533309 CFAP65Q6ZU64 1925 aaKnown RBP23.15■■□□□ 1.3
TRIM3-213ENST00000533309 CLTCQ00610 1675 aaKnown RBP23.14■■□□□ 1.3
TRIM3-213ENST00000533309 TONSLQ96HA7 1378 aa23.14■■□□□ 1.29
TRIM3-213ENST00000533309 ARHGAP31Q2M1Z3 1444 aa23.12■■□□□ 1.29
TRIM3-213ENST00000533309 CCDC144AA2RUR9 1427 aa23.12■■□□□ 1.29
TRIM3-213ENST00000533309 PPP6R1Q9UPN7 881 aa23.11■■□□□ 1.29
TRIM3-213ENST00000533309 CLTCL1P53675 1640 aa23.11■■□□□ 1.29
TRIM3-213ENST00000533309 MLECQ14165 292 aa23.08■■□□□ 1.28
TRIM3-213ENST00000533309 PREX1Q8TCU6 1659 aa23.07■■□□□ 1.28
TRIM3-213ENST00000533309 ARID4BQ4LE39 1312 aaPredicted RBP23.07■■□□□ 1.28
TRIM3-213ENST00000533309 UGGT1Q9NYU2 1555 aa23.06■■□□□ 1.28
TRIM3-213ENST00000533309 NOS1P29475 1434 aa23.05■■□□□ 1.28
TRIM3-213ENST00000533309 SYNMO15061 1565 aa23.05■■□□□ 1.28
TRIM3-213ENST00000533309 CNTLNQ9NXG0 1405 aa23.04■■□□□ 1.28
TRIM3-213ENST00000533309 L3MBTL2Q969R5 705 aa23.04■■□□□ 1.28
TRIM3-213ENST00000533309 PPP1R15AO75807 674 aaPredicted RBP23.03■■□□□ 1.28
TRIM3-213ENST00000533309 PIK3C2BO00750 1634 aa23.02■■□□□ 1.28
TRIM3-213ENST00000533309 MROH2AA6NES4 1674 aa23.02■■□□□ 1.28
TRIM3-213ENST00000533309 FER1L4A9Z1Z3 1794 aa23.01■■□□□ 1.27
TRIM3-213ENST00000533309 KIF1BO60333 1816 aa23.01■■□□□ 1.27
TRIM3-213ENST00000533309 SPATA31E1Q6ZUB1 1445 aa23.01■■□□□ 1.27
TRIM3-213ENST00000533309 NEURL4Q96JN8 1562 aa22.99■■□□□ 1.27
TRIM3-213ENST00000533309 ERVK-7P63135 1459 aa22.99■■□□□ 1.27
TRIM3-213ENST00000533309 SPATA31D1Q6ZQQ2 1576 aa22.97■■□□□ 1.27
TRIM3-213ENST00000533309 ADGRB3O60242 1522 aa22.94■■□□□ 1.26
TRIM3-213ENST00000533309 ZMYM3Q14202 1370 aa22.94■■□□□ 1.26
TRIM3-213ENST00000533309 FBXO31Q5XUX0 539 aaPredicted RBP22.93■■□□□ 1.26
TRIM3-213ENST00000533309 ESF1Q9H501 851 aaKnown RBP22.92■■□□□ 1.26
TRIM3-213ENST00000533309 C3P01024 1663 aa22.92■■□□□ 1.26
TRIM3-213ENST00000533309 ADAMTSL3P82987 1691 aa22.92■■□□□ 1.26
TRIM3-213ENST00000533309 MADDQ8WXG6 1647 aa22.91■■□□□ 1.26
TRIM3-213ENST00000533309 IFT172Q9UG01 1749 aa22.9■■□□□ 1.26
TRIM3-213ENST00000533309 RGL3Q3MIN7 710 aa22.9■■□□□ 1.26
TRIM3-213ENST00000533309 UHRF1BP1Q6BDS2 1440 aa22.89■■□□□ 1.25
TRIM3-213ENST00000533309 MYO5BQ9ULV0 1848 aa22.89■■□□□ 1.25
TRIM3-213ENST00000533309 NBPF8Q3BBV2 869 aa22.88■■□□□ 1.25
TRIM3-213ENST00000533309 RIMS1Q86UR5 1692 aaKnown RBP22.86■■□□□ 1.25
TRIM3-213ENST00000533309 DCAF11Q8TEB1 546 aa22.86■■□□□ 1.25
TRIM3-213ENST00000533309 SLC52A1Q9NWF4 448 aa22.86■■□□□ 1.25
TRIM3-213ENST00000533309 TMEM131LA2VDJ0 1609 aa22.85■■□□□ 1.25
TRIM3-213ENST00000533309 IDI1Q13907 227 aa22.84■■□□□ 1.25
TRIM3-213ENST00000533309 PPLO60437 1756 aa22.84■■□□□ 1.25
TRIM3-213ENST00000533309 PRAG1Q86YV5 1406 aa22.82■■□□□ 1.24
TRIM3-213ENST00000533309 KDM2AQ9Y2K7 1162 aa22.81■■□□□ 1.24
TRIM3-213ENST00000533309 TRPM1Q7Z4N2 1603 aa22.8■■□□□ 1.24
TRIM3-213ENST00000533309 MYOM2P54296 1465 aa22.79■■□□□ 1.24
TRIM3-213ENST00000533309 RALGAPBQ86X10 1494 aa22.79■■□□□ 1.24
TRIM3-213ENST00000533309 TNRQ92752 1358 aa22.79■■□□□ 1.24
TRIM3-213ENST00000533309 CHGAP10645 457 aaKnown RBP22.78■■□□□ 1.24
TRIM3-213ENST00000533309 CEBPAP49715 358 aaPredicted RBP22.78■■□□□ 1.24
TRIM3-213ENST00000533309 NEXMIFQ5QGS0 1516 aa22.78■■□□□ 1.24
TRIM3-213ENST00000533309 ZNF326Q5BKZ1 582 aaKnown RBP22.77■■□□□ 1.24
TRIM3-213ENST00000533309 KDM5AP29375 1690 aaKnown RBP22.76■■□□□ 1.23
TRIM3-213ENST00000533309 NRXN1Q9ULB1 1477 aa22.74■■□□□ 1.23
TRIM3-213ENST00000533309 STAC3Q96MF2 364 aa22.74■■□□□ 1.23
TRIM3-213ENST00000533309 A2ML1A8K2U0 1454 aa22.73■■□□□ 1.23
TRIM3-213ENST00000533309 UBR1Q8IWV7 1749 aa22.73■■□□□ 1.23
TRIM3-213ENST00000533309 RPGRIP1LQ68CZ1 1315 aa22.72■■□□□ 1.23
TRIM3-213ENST00000533309 NLRP1Q9C000 1473 aa22.71■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms