RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 PKD2Q13563 968 aa13.94□□□□□ -0.18
CD44-232ENST00000531118 INO80Q9ULG1 1556 aaPredicted RBP13.94□□□□□ -0.18
CD44-232ENST00000531118 PTPRKQ15262 1439 aa13.93□□□□□ -0.18
CD44-232ENST00000531118 DNMT1P26358 1616 aaKnown RBP13.93□□□□□ -0.18
CD44-232ENST00000531118 SYCP2Q9BX26 1530 aa13.92□□□□□ -0.18
CD44-232ENST00000531118 ZMYM3Q14202 1370 aa13.92□□□□□ -0.18
CD44-232ENST00000531118 ATP7AQ04656 1500 aa13.91□□□□□ -0.18
CD44-232ENST00000531118 A2ML1A8K2U0 1454 aa13.91□□□□□ -0.18
CD44-232ENST00000531118 ARHGAP35Q9NRY4 1499 aa13.91□□□□□ -0.18
CD44-232ENST00000531118 CDK11AQ9UQ88 783 aaPredicted RBP13.9□□□□□ -0.18
CD44-232ENST00000531118 VWDEQ8N2E2 1590 aa13.89□□□□□ -0.19
CD44-232ENST00000531118 PIP4K2BP78356 416 aa13.89□□□□□ -0.19
CD44-232ENST00000531118 SHANK2Q9UPX8 1470 aa13.88□□□□□ -0.19
CD44-232ENST00000531118 RNF17Q9BXT8 1623 aaKnown RBP13.88□□□□□ -0.19
CD44-232ENST00000531118 SYNMO15061 1565 aa13.87□□□□□ -0.19
CD44-232ENST00000531118 ADGBQ8N7X0 1667 aa13.86□□□□□ -0.19
CD44-232ENST00000531118 ATP1B4Q9UN42 357 aaPredicted RBP13.86□□□□□ -0.19
CD44-232ENST00000531118 TOM1O60784 492 aa13.85□□□□□ -0.19
CD44-232ENST00000531118 A2MP01023 1474 aa13.85□□□□□ -0.19
CD44-232ENST00000531118 CCDC18Q5T9S5 1454 aa13.85□□□□□ -0.19
CD44-232ENST00000531118 STRCP1A6NGW2 1772 aa13.83□□□□□ -0.19
CD44-232ENST00000531118 DEPDC5O75140 1603 aa13.82□□□□□ -0.2
CD44-232ENST00000531118 IQGAP1P46940 1657 aa13.82□□□□□ -0.2
CD44-232ENST00000531118 SETD1AO15047 1707 aaKnown RBP13.79□□□□□ -0.2
CD44-232ENST00000531118 CACNB1Q02641 598 aaPredicted RBP13.79□□□□□ -0.2
CD44-232ENST00000531118 SPAG9O60271 1321 aaKnown RBP13.79□□□□□ -0.2
CD44-232ENST00000531118 FAM135AQ9P2D6 1515 aa13.78□□□□□ -0.2
CD44-232ENST00000531118 MED14O60244 1454 aa13.77□□□□□ -0.21
CD44-232ENST00000531118 PZPP20742 1482 aa13.77□□□□□ -0.21
CD44-232ENST00000531118 PLEKHH2Q8IVE3 1493 aa13.77□□□□□ -0.21
CD44-232ENST00000531118 KDM5DQ9BY66 1539 aa13.77□□□□□ -0.21
CD44-232ENST00000531118 SPINK5Q9NQ38 1064 aaPredicted RBP13.77□□□□□ -0.21
CD44-232ENST00000531118 ZNF219Q9P2Y4 722 aaPredicted RBP13.77□□□□□ -0.21
CD44-232ENST00000531118 NPHP4O75161 1426 aaPredicted RBP13.76□□□□□ -0.21
CD44-232ENST00000531118 CASKIN1Q8WXD9 1431 aa13.76□□□□□ -0.21
CD44-232ENST00000531118 TNRQ92752 1358 aa13.76□□□□□ -0.21
CD44-232ENST00000531118 CAPN15O75808 1086 aa13.76□□□□□ -0.21
CD44-232ENST00000531118 LRRC7Q96NW7 1537 aa13.75□□□□□ -0.21
CD44-232ENST00000531118 GPATCH8Q9UKJ3 1502 aaKnown RBP13.75□□□□□ -0.21
CD44-232ENST00000531118 ATF5Q9Y2D1 282 aaPredicted RBP13.75□□□□□ -0.21
CD44-232ENST00000531118 ZC3H13Q5T200 1668 aaKnown RBP13.75□□□□□ -0.21
CD44-232ENST00000531118 KIAA1107Q9UPP5 1409 aa13.74□□□□□ -0.21
CD44-232ENST00000531118 UGGT1Q9NYU2 1555 aa13.74□□□□□ -0.21
CD44-232ENST00000531118 XIRP1Q702N8 1843 aaKnown RBP13.74□□□□□ -0.21
CD44-232ENST00000531118 GGT6Q6P531 493 aa13.73□□□□□ -0.21
CD44-232ENST00000531118 RGS17Q9UGC6 210 aaPredicted RBP13.73□□□□□ -0.21
CD44-232ENST00000531118 FYCO1Q9BQS8 1478 aa13.73□□□□□ -0.21
CD44-232ENST00000531118 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.72□□□□□ -0.21
CD44-232ENST00000531118 ZNF777Q9ULD5 760 aaPredicted RBP13.72□□□□□ -0.21
CD44-232ENST00000531118 NLRP1Q9C000 1473 aa13.72□□□□□ -0.21
CD44-232ENST00000531118 HNRNPMP52272 730 aaKnown RBP eCLIP13.69□□□□□ -0.22
CD44-232ENST00000531118 TIAM1Q13009 1591 aa13.68□□□□□ -0.22
CD44-232ENST00000531118 UBTFP17480 764 aaKnown RBP13.67□□□□□ -0.22
CD44-232ENST00000531118 ANKLE2Q86XL3 938 aa13.67□□□□□ -0.22
CD44-232ENST00000531118 FBXO31Q5XUX0 539 aaPredicted RBP13.65□□□□□ -0.22
CD44-232ENST00000531118 RTEL1-TNFRSF6BF6WH68 1400 aa13.64□□□□□ -0.23
CD44-232ENST00000531118 MIA2Q96PC5 1412 aa13.64□□□□□ -0.23
CD44-232ENST00000531118 UBR1Q8IWV7 1749 aa13.64□□□□□ -0.23
CD44-232ENST00000531118 MBD5Q9P267 1494 aa13.64□□□□□ -0.23
CD44-232ENST00000531118 DHX29Q7Z478 1369 aaKnown RBP13.63□□□□□ -0.23
CD44-232ENST00000531118 CCNB3Q8WWL7 1395 aa13.63□□□□□ -0.23
CD44-232ENST00000531118 POTEAQ6S8J7 498 aa13.63□□□□□ -0.23
CD44-232ENST00000531118 ROBO1Q9Y6N7 1651 aa13.63□□□□□ -0.23
CD44-232ENST00000531118 THEMISQ8N1K5 641 aaPredicted RBP13.61□□□□□ -0.23
CD44-232ENST00000531118 CFDP1Q9UEE9 299 aaPredicted RBP13.61□□□□□ -0.23
CD44-232ENST00000531118 CCDC141Q6ZP82 1450 aa13.61□□□□□ -0.23
CD44-232ENST00000531118 ABCC3O15438 1527 aa13.6□□□□□ -0.23
CD44-232ENST00000531118 ERVK-7P63135 1459 aa13.6□□□□□ -0.23
CD44-232ENST00000531118 SCAF11Q99590 1463 aaKnown RBP13.6□□□□□ -0.23
CD44-232ENST00000531118 EHBP1L1Q8N3D4 1523 aa13.59□□□□□ -0.23
CD44-232ENST00000531118 CEP152O94986 1710 aa13.59□□□□□ -0.23
CD44-232ENST00000531118 MAP3K1Q13233 1512 aa13.58□□□□□ -0.24
CD44-232ENST00000531118 FAM135BQ49AJ0 1406 aa13.57□□□□□ -0.24
CD44-232ENST00000531118 ARHGAP23Q9P227 1491 aa13.56□□□□□ -0.24
CD44-232ENST00000531118 SLIT1O75093 1534 aa13.56□□□□□ -0.24
CD44-232ENST00000531118 KIF3BO15066 747 aa13.56□□□□□ -0.24
CD44-232ENST00000531118 MROH1Q8NDA8 1641 aa13.56□□□□□ -0.24
CD44-232ENST00000531118 EIF2AK4Q9P2K8 1649 aaKnown RBP13.56□□□□□ -0.24
CD44-232ENST00000531118 PHLPP1O60346 1717 aa13.56□□□□□ -0.24
CD44-232ENST00000531118 CAMSAP2Q08AD1 1489 aa13.55□□□□□ -0.24
CD44-232ENST00000531118 NCOA2Q15596 1464 aa13.55□□□□□ -0.24
CD44-232ENST00000531118 LRRC9Q6ZRR7 1453 aa13.55□□□□□ -0.24
CD44-232ENST00000531118 ZNF644Q9H582 1327 aaPredicted RBP13.55□□□□□ -0.24
CD44-232ENST00000531118 WASHC2CQ9Y4E1 1318 aa13.55□□□□□ -0.24
CD44-232ENST00000531118 CFAP65Q6ZU64 1925 aaKnown RBP13.54□□□□□ -0.24
CD44-232ENST00000531118 MTUS2Q5JR59 1369 aa13.54□□□□□ -0.24
CD44-232ENST00000531118 ARHGEF5Q12774 1597 aa13.53□□□□□ -0.24
CD44-232ENST00000531118 DSG3P32926 999 aa13.52□□□□□ -0.25
CD44-232ENST00000531118 NWD1Q149M9 1564 aa13.52□□□□□ -0.25
CD44-232ENST00000531118 COL16A1Q07092 1604 aaPredicted RBP13.51□□□□□ -0.25
CD44-232ENST00000531118 CEP162Q5TB80 1403 aa13.51□□□□□ -0.25
CD44-232ENST00000531118 PIK3C2BO00750 1634 aa13.5□□□□□ -0.25
CD44-232ENST00000531118 MAST1Q9Y2H9 1570 aa13.49□□□□□ -0.25
CD44-232ENST00000531118 TMEM94Q12767 1356 aa13.49□□□□□ -0.25
CD44-232ENST00000531118 LRP6O75581 1613 aa13.49□□□□□ -0.25
CD44-232ENST00000531118 NKTRP30414 1462 aaKnown RBP13.48□□□□□ -0.25
CD44-232ENST00000531118 KDM5AP29375 1690 aaKnown RBP13.47□□□□□ -0.25
CD44-232ENST00000531118 POLA2Q14181 598 aa13.47□□□□□ -0.25
CD44-232ENST00000531118 PRDM15P57071 1507 aaPredicted RBP13.47□□□□□ -0.25
CD44-232ENST00000531118 JCADQ9P266 1359 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms