RNA–Protein interactions for RNA: ENST00000531042.5

CPSF1-205, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-205ENST00000531042 CEP170BQ9Y4F5 1589 aaPredicted RBP24.89■■□□□ 1.58
CPSF1-205ENST00000531042 FAM135AQ9P2D6 1515 aa24.89■■□□□ 1.57
CPSF1-205ENST00000531042 KDM5DQ9BY66 1539 aa24.88■■□□□ 1.57
CPSF1-205ENST00000531042 PLA2R1Q13018 1463 aa24.84■■□□□ 1.57
CPSF1-205ENST00000531042 NCKAP5LQ9HCH0 1330 aa24.84■■□□□ 1.57
CPSF1-205ENST00000531042 WASHC2CQ9Y4E1 1318 aa24.84■■□□□ 1.57
CPSF1-205ENST00000531042 PZPP20742 1482 aa24.83■■□□□ 1.56
CPSF1-205ENST00000531042 APLP2Q06481 763 aa24.82■■□□□ 1.56
CPSF1-205ENST00000531042 FBXO31Q5XUX0 539 aaPredicted RBP24.82■■□□□ 1.56
CPSF1-205ENST00000531042 LTBP4Q8N2S1 1624 aa24.82■■□□□ 1.56
CPSF1-205ENST00000531042 A2ML1A8K2U0 1454 aa24.82■■□□□ 1.56
CPSF1-205ENST00000531042 PKD2Q13563 968 aa24.81■■□□□ 1.56
CPSF1-205ENST00000531042 DNMT1P26358 1616 aaKnown RBP24.8■■□□□ 1.56
CPSF1-205ENST00000531042 TCOF1Q13428 1488 aaKnown RBP24.8■■□□□ 1.56
CPSF1-205ENST00000531042 RNF17Q9BXT8 1623 aaKnown RBP24.79■■□□□ 1.56
CPSF1-205ENST00000531042 TNRQ92752 1358 aa24.79■■□□□ 1.56
CPSF1-205ENST00000531042 EIF2AK4Q9P2K8 1649 aaKnown RBP24.78■■□□□ 1.56
CPSF1-205ENST00000531042 PTPN23Q9H3S7 1636 aa24.75■■□□□ 1.55
CPSF1-205ENST00000531042 ZC3H13Q5T200 1668 aaKnown RBP24.73■■□□□ 1.55
CPSF1-205ENST00000531042 DUOX2Q9NRD8 1548 aa24.73■■□□□ 1.55
CPSF1-205ENST00000531042 CROCC2H7BZ55 1655 aa24.72■■□□□ 1.55
CPSF1-205ENST00000531042 ABCC3O15438 1527 aa24.72■■□□□ 1.55
CPSF1-205ENST00000531042 ABCC5O15440 1437 aa24.72■■□□□ 1.55
CPSF1-205ENST00000531042 MROH1Q8NDA8 1641 aa24.72■■□□□ 1.55
CPSF1-205ENST00000531042 IQSEC2Q5JU85 1478 aa24.71■■□□□ 1.55
CPSF1-205ENST00000531042 SHANK2Q9UPX8 1470 aa24.7■■□□□ 1.55
CPSF1-205ENST00000531042 ZNF335Q9H4Z2 1342 aaPredicted RBP24.7■■□□□ 1.54
CPSF1-205ENST00000531042 FGD6Q6ZV73 1430 aa24.69■■□□□ 1.54
CPSF1-205ENST00000531042 NLRP1Q9C000 1473 aa24.69■■□□□ 1.54
CPSF1-205ENST00000531042 KIF15Q9NS87 1388 aa24.67■■□□□ 1.54
CPSF1-205ENST00000531042 POLR1AO95602 1720 aaPredicted RBP24.67■■□□□ 1.54
CPSF1-205ENST00000531042 DAPK1P53355 1430 aa24.67■■□□□ 1.54
CPSF1-205ENST00000531042 SPATA31D1Q6ZQQ2 1576 aa24.66■■□□□ 1.54
CPSF1-205ENST00000531042 CEP152O94986 1710 aa24.66■■□□□ 1.54
CPSF1-205ENST00000531042 RRP7BPQ9NSQ0 103 aa24.65■■□□□ 1.54
CPSF1-205ENST00000531042 NEURL4Q96JN8 1562 aa24.64■■□□□ 1.54
CPSF1-205ENST00000531042 UGGT1Q9NYU2 1555 aa24.64■■□□□ 1.54
CPSF1-205ENST00000531042 THEMISQ8N1K5 641 aaPredicted RBP24.64■■□□□ 1.54
CPSF1-205ENST00000531042 ERBINQ96RT1 1412 aa24.63■■□□□ 1.53
CPSF1-205ENST00000531042 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.63■■□□□ 1.533e-7■■■□□ 15.5
CPSF1-205ENST00000531042 ERVK-7P63135 1459 aa24.62■■□□□ 1.53
CPSF1-205ENST00000531042 PRDM15P57071 1507 aaPredicted RBP24.61■■□□□ 1.53
CPSF1-205ENST00000531042 ANKLE2Q86XL3 938 aa24.61■■□□□ 1.53
CPSF1-205ENST00000531042 CFAP65Q6ZU64 1925 aaKnown RBP24.59■■□□□ 1.53
CPSF1-205ENST00000531042 DEPDC5O75140 1603 aa24.57■■□□□ 1.52
CPSF1-205ENST00000531042 ANKRD30AQ9BXX3 1397 aa24.56■■□□□ 1.52
CPSF1-205ENST00000531042 CHIC2Q9UKJ5 165 aa24.56■■□□□ 1.52
CPSF1-205ENST00000531042 ARHGAP31Q2M1Z3 1444 aa24.55■■□□□ 1.52
CPSF1-205ENST00000531042 MED14O60244 1454 aa24.55■■□□□ 1.52
CPSF1-205ENST00000531042 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.53■■□□□ 1.524e-7■■■□□ 16.7
CPSF1-205ENST00000531042 NPHP4O75161 1426 aaPredicted RBP24.52■■□□□ 1.52
CPSF1-205ENST00000531042 UBAP1LF5GYI3 381 aa24.51■■□□□ 1.51
CPSF1-205ENST00000531042 UBR1Q8IWV7 1749 aa24.51■■□□□ 1.51
CPSF1-205ENST00000531042 KANK1Q14678 1352 aa24.51■■□□□ 1.51
CPSF1-205ENST00000531042 CPS1P31327 1500 aa24.5■■□□□ 1.51
CPSF1-205ENST00000531042 ADGRL2O95490 1459 aa24.49■■□□□ 1.51
CPSF1-205ENST00000531042 VWDEQ8N2E2 1590 aa24.49■■□□□ 1.51
CPSF1-205ENST00000531042 IQGAP1P46940 1657 aa24.49■■□□□ 1.51
CPSF1-205ENST00000531042 FAM50AQ14320 339 aaKnown RBP24.48■■□□□ 1.51
CPSF1-205ENST00000531042 LMTK2Q8IWU2 1503 aa24.46■■□□□ 1.51
CPSF1-205ENST00000531042 SLIT1O75093 1534 aa24.41■■□□□ 1.5
CPSF1-205ENST00000531042 ARHGAP23Q9P227 1491 aa24.41■■□□□ 1.5
CPSF1-205ENST00000531042 PIK3C2BO00750 1634 aa24.41■■□□□ 1.5
CPSF1-205ENST00000531042 SCAF11Q99590 1463 aaKnown RBP24.4■■□□□ 1.5
CPSF1-205ENST00000531042 DISP3Q9P2K9 1392 aa24.39■■□□□ 1.49
CPSF1-205ENST00000531042 ANKRD50Q9ULJ7 1429 aa24.38■■□□□ 1.49
CPSF1-205ENST00000531042 LTKP29376 864 aa24.38■■□□□ 1.49
CPSF1-205ENST00000531042 EFCAB6Q5THR3 1501 aa24.38■■□□□ 1.49
CPSF1-205ENST00000531042 STRCP1A6NGW2 1772 aa24.38■■□□□ 1.49
CPSF1-205ENST00000531042 TXNDC2Q86VQ3 553 aa24.37■■□□□ 1.49
CPSF1-205ENST00000531042 SYNMO15061 1565 aa24.36■■□□□ 1.49
CPSF1-205ENST00000531042 KDM5AP29375 1690 aaKnown RBP24.36■■□□□ 1.49
CPSF1-205ENST00000531042 TOM1O60784 492 aa24.35■■□□□ 1.49
CPSF1-205ENST00000531042 IDI1Q13907 227 aa24.35■■□□□ 1.49
CPSF1-205ENST00000531042 NOS1P29475 1434 aa24.35■■□□□ 1.49
CPSF1-205ENST00000531042 TMEM2Q9UHN6 1383 aa24.33■■□□□ 1.49
CPSF1-205ENST00000531042 STAG3Q9UJ98 1225 aa24.33■■□□□ 1.49
CPSF1-205ENST00000531042 EID1Q9Y6B2 187 aa24.33■■□□□ 1.49
CPSF1-205ENST00000531042 LRRC7Q96NW7 1537 aa24.31■■□□□ 1.48
CPSF1-205ENST00000531042 PIP4K2BP78356 416 aa24.31■■□□□ 1.48
CPSF1-205ENST00000531042 SCAF1Q9H7N4 1312 aaKnown RBP24.3■■□□□ 1.48
CPSF1-205ENST00000531042 RPRD2Q5VT52 1461 aaKnown RBP24.29■■□□□ 1.48
CPSF1-205ENST00000531042 TET3O43151 1660 aa24.28■■□□□ 1.48
CPSF1-205ENST00000531042 ROCK1Q13464 1354 aa24.28■■□□□ 1.48
CPSF1-205ENST00000531042 ALKQ9UM73 1620 aa24.28■■□□□ 1.48
CPSF1-205ENST00000531042 SLC52A1Q9NWF4 448 aa24.27■■□□□ 1.48
CPSF1-205ENST00000531042 UNC13BO14795 1591 aa24.27■■□□□ 1.48
CPSF1-205ENST00000531042 ADGRB3O60242 1522 aa24.26■■□□□ 1.47
CPSF1-205ENST00000531042 ILDR2Q71H61 639 aa24.26■■□□□ 1.47
CPSF1-205ENST00000531042 HSPA1LP34931 641 aa24.25■■□□□ 1.47
CPSF1-205ENST00000531042 GCC2Q8IWJ2 1684 aa24.24■■□□□ 1.47
CPSF1-205ENST00000531042 PPARGC1BQ86YN6 1023 aaKnown RBP24.24■■□□□ 1.47
CPSF1-205ENST00000531042 ITGAEP38570 1179 aa24.19■■□□□ 1.46
CPSF1-205ENST00000531042 XIRP1Q702N8 1843 aaKnown RBP24.19■■□□□ 1.46
CPSF1-205ENST00000531042 E9PCH4 1651 aa24.18■■□□□ 1.46
CPSF1-205ENST00000531042 IQGAP3Q86VI3 1631 aa24.17■■□□□ 1.46
CPSF1-205ENST00000531042 MYO5BQ9ULV0 1848 aa24.17■■□□□ 1.46
CPSF1-205ENST00000531042 TMEM131LA2VDJ0 1609 aa24.15■■□□□ 1.46
CPSF1-205ENST00000531042 SLC26A8Q96RN1 970 aa24.15■■□□□ 1.46
CPSF1-205ENST00000531042 ZFYVE9O95405 1425 aa24.13■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms