RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 IQSEC2Q5JU85 1478 aa18.05■□□□□ 0.48
VPS28-214ENST00000531032 A2ML1A8K2U0 1454 aa18.04■□□□□ 0.48
VPS28-214ENST00000531032 NCKAP5LQ9HCH0 1330 aa18.03■□□□□ 0.48
VPS28-214ENST00000531032 PZPP20742 1482 aa18.03■□□□□ 0.48
VPS28-214ENST00000531032 PKD2Q13563 968 aa18.03■□□□□ 0.48
VPS28-214ENST00000531032 MAST1Q9Y2H9 1570 aa18.03■□□□□ 0.48
VPS28-214ENST00000531032 DNMT1P26358 1616 aaKnown RBP18.02■□□□□ 0.48
VPS28-214ENST00000531032 TSPY4P0CV99 314 aa18.01■□□□□ 0.47
VPS28-214ENST00000531032 TSPY10P0CW01 314 aa18.01■□□□□ 0.47
VPS28-214ENST00000531032 MIA2Q96PC5 1412 aa18■□□□□ 0.47
VPS28-214ENST00000531032 KANK4Q5T7N3 995 aaPredicted RBP18■□□□□ 0.47
VPS28-214ENST00000531032 RNF17Q9BXT8 1623 aaKnown RBP18■□□□□ 0.47
VPS28-214ENST00000531032 MYOM3Q5VTT5 1437 aa17.99■□□□□ 0.47
VPS28-214ENST00000531032 TNRQ92752 1358 aa17.99■□□□□ 0.47
VPS28-214ENST00000531032 WASHC2CQ9Y4E1 1318 aa17.98■□□□□ 0.47
VPS28-214ENST00000531032 FBXO31Q5XUX0 539 aaPredicted RBP17.97■□□□□ 0.47
VPS28-214ENST00000531032 EIF2AK4Q9P2K8 1649 aaKnown RBP17.97■□□□□ 0.47
VPS28-214ENST00000531032 ZNF335Q9H4Z2 1342 aaPredicted RBP17.97■□□□□ 0.47
VPS28-214ENST00000531032 ZC3H13Q5T200 1668 aaKnown RBP17.96■□□□□ 0.47
VPS28-214ENST00000531032 POLR1AO95602 1720 aaPredicted RBP17.95■□□□□ 0.46
VPS28-214ENST00000531032 NEURL4Q96JN8 1562 aa17.94■□□□□ 0.46
VPS28-214ENST00000531032 NLRP1Q9C000 1473 aa17.94■□□□□ 0.46
VPS28-214ENST00000531032 ABCC3O15438 1527 aa17.93■□□□□ 0.46
VPS28-214ENST00000531032 MROH1Q8NDA8 1641 aa17.93■□□□□ 0.46
VPS28-214ENST00000531032 SPATA31D1Q6ZQQ2 1576 aa17.91■□□□□ 0.46
VPS28-214ENST00000531032 CROCC2H7BZ55 1655 aa17.9■□□□□ 0.46
VPS28-214ENST00000531032 DUOX2Q9NRD8 1548 aa17.9■□□□□ 0.46
VPS28-214ENST00000531032 UGGT1Q9NYU2 1555 aa17.9■□□□□ 0.46
VPS28-214ENST00000531032 SHANK2Q9UPX8 1470 aa17.89■□□□□ 0.45
VPS28-214ENST00000531032 PTPN23Q9H3S7 1636 aa17.88■□□□□ 0.45
VPS28-214ENST00000531032 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.88■□□□□ 0.453e-6■■□□□ 12.6
VPS28-214ENST00000531032 DEPDC5O75140 1603 aa17.87■□□□□ 0.45
VPS28-214ENST00000531032 ABCC5O15440 1437 aa17.87■□□□□ 0.45
VPS28-214ENST00000531032 ERVK-7P63135 1459 aa17.87■□□□□ 0.45
VPS28-214ENST00000531032 CEP152O94986 1710 aa17.86■□□□□ 0.45
VPS28-214ENST00000531032 THEMISQ8N1K5 641 aaPredicted RBP17.86■□□□□ 0.45
VPS28-214ENST00000531032 MED14O60244 1454 aa17.86■□□□□ 0.45
VPS28-214ENST00000531032 PRDM15P57071 1507 aaPredicted RBP17.85■□□□□ 0.45
VPS28-214ENST00000531032 ANKLE2Q86XL3 938 aa17.85■□□□□ 0.45
VPS28-214ENST00000531032 KIF15Q9NS87 1388 aa17.85■□□□□ 0.45
VPS28-214ENST00000531032 CPS1P31327 1500 aa17.84■□□□□ 0.45
VPS28-214ENST00000531032 ERBINQ96RT1 1412 aa17.84■□□□□ 0.45
VPS28-214ENST00000531032 APLP2Q06481 763 aa17.84■□□□□ 0.45
VPS28-214ENST00000531032 DAPK1P53355 1430 aa17.83■□□□□ 0.45
VPS28-214ENST00000531032 FGD6Q6ZV73 1430 aa17.83■□□□□ 0.45
VPS28-214ENST00000531032 DISP3Q9P2K9 1392 aa17.83■□□□□ 0.45
VPS28-214ENST00000531032 UBAP1LF5GYI3 381 aa17.83■□□□□ 0.44
VPS28-214ENST00000531032 VWDEQ8N2E2 1590 aa17.83■□□□□ 0.44
VPS28-214ENST00000531032 NPHP4O75161 1426 aaPredicted RBP17.82■□□□□ 0.44
VPS28-214ENST00000531032 IQGAP1P46940 1657 aa17.81■□□□□ 0.44
VPS28-214ENST00000531032 ARHGAP31Q2M1Z3 1444 aa17.81■□□□□ 0.44
VPS28-214ENST00000531032 UBR1Q8IWV7 1749 aa17.79■□□□□ 0.44
VPS28-214ENST00000531032 RRP7BPQ9NSQ0 103 aa17.78■□□□□ 0.44
VPS28-214ENST00000531032 CFAP65Q6ZU64 1925 aaKnown RBP17.77■□□□□ 0.44
VPS28-214ENST00000531032 ANKRD30AQ9BXX3 1397 aa17.75■□□□□ 0.43
VPS28-214ENST00000531032 SLIT1O75093 1534 aa17.74■□□□□ 0.43
VPS28-214ENST00000531032 ILDR2Q71H61 639 aa17.74■□□□□ 0.43
VPS28-214ENST00000531032 ARHGAP23Q9P227 1491 aa17.74■□□□□ 0.43
VPS28-214ENST00000531032 LMTK2Q8IWU2 1503 aa17.73■□□□□ 0.43
VPS28-214ENST00000531032 SCAF11Q99590 1463 aaKnown RBP17.73■□□□□ 0.43
VPS28-214ENST00000531032 STRCP1A6NGW2 1772 aa17.73■□□□□ 0.43
VPS28-214ENST00000531032 ADGRL2O95490 1459 aa17.72■□□□□ 0.43
VPS28-214ENST00000531032 KANK1Q14678 1352 aa17.72■□□□□ 0.43
VPS28-214ENST00000531032 SYNMO15061 1565 aa17.71■□□□□ 0.43
VPS28-214ENST00000531032 TOM1O60784 492 aa17.71■□□□□ 0.43
VPS28-214ENST00000531032 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.71■□□□□ 0.439e-9■■■□□ 15.1
VPS28-214ENST00000531032 PIK3C2BO00750 1634 aa17.7■□□□□ 0.42
VPS28-214ENST00000531032 ALKQ9UM73 1620 aa17.7■□□□□ 0.42
VPS28-214ENST00000531032 CHIC2Q9UKJ5 165 aa17.7■□□□□ 0.42
VPS28-214ENST00000531032 KDM5AP29375 1690 aaKnown RBP17.7■□□□□ 0.42
VPS28-214ENST00000531032 LRRC7Q96NW7 1537 aa17.68■□□□□ 0.42
VPS28-214ENST00000531032 EFCAB6Q5THR3 1501 aa17.67■□□□□ 0.42
VPS28-214ENST00000531032 LTKP29376 864 aa17.67■□□□□ 0.42
VPS28-214ENST00000531032 PIP4K2BP78356 416 aa17.67■□□□□ 0.42
VPS28-214ENST00000531032 SCAF1Q9H7N4 1312 aaKnown RBP17.66■□□□□ 0.42
VPS28-214ENST00000531032 TMEM2Q9UHN6 1383 aa17.66■□□□□ 0.42
VPS28-214ENST00000531032 SOCS7O14512 581 aa17.65■□□□□ 0.42
VPS28-214ENST00000531032 HSPA1LP34931 641 aa17.65■□□□□ 0.42
VPS28-214ENST00000531032 TXNDC2Q86VQ3 553 aa17.65■□□□□ 0.42
VPS28-214ENST00000531032 NOS1P29475 1434 aa17.64■□□□□ 0.42
VPS28-214ENST00000531032 EID1Q9Y6B2 187 aa17.63■□□□□ 0.41
VPS28-214ENST00000531032 ANKRD50Q9ULJ7 1429 aa17.63■□□□□ 0.41
VPS28-214ENST00000531032 IDI1Q13907 227 aa17.62■□□□□ 0.41
VPS28-214ENST00000531032 FAM50AQ14320 339 aaKnown RBP17.62■□□□□ 0.41
VPS28-214ENST00000531032 RPRD2Q5VT52 1461 aaKnown RBP17.61■□□□□ 0.41
VPS28-214ENST00000531032 ADGRB3O60242 1522 aa17.61■□□□□ 0.41
VPS28-214ENST00000531032 STAG3Q9UJ98 1225 aa17.6■□□□□ 0.41
VPS28-214ENST00000531032 MED1Q15648 1581 aaPredicted RBP17.6■□□□□ 0.41
VPS28-214ENST00000531032 XIRP1Q702N8 1843 aaKnown RBP17.59■□□□□ 0.41
VPS28-214ENST00000531032 TET3O43151 1660 aa17.58■□□□□ 0.41
VPS28-214ENST00000531032 SLC52A1Q9NWF4 448 aa17.57■□□□□ 0.4
VPS28-214ENST00000531032 UNC13BO14795 1591 aa17.57■□□□□ 0.4
VPS28-214ENST00000531032 GCC2Q8IWJ2 1684 aa17.55■□□□□ 0.4
VPS28-214ENST00000531032 ROCK1Q13464 1354 aa17.53■□□□□ 0.4
VPS28-214ENST00000531032 ZFYVE9O95405 1425 aa17.51■□□□□ 0.39
VPS28-214ENST00000531032 KCNA6P17658 529 aa17.51■□□□□ 0.39
VPS28-214ENST00000531032 NWD1Q149M9 1564 aa17.51■□□□□ 0.39
VPS28-214ENST00000531032 MYO5BQ9ULV0 1848 aa17.51■□□□□ 0.39
VPS28-214ENST00000531032 TMEM131LA2VDJ0 1609 aa17.5■□□□□ 0.39
VPS28-214ENST00000531032 SLC26A8Q96RN1 970 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms