RNA–Protein interactions for RNA: ENST00000529542.1

HIF3A-213, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 5

Gene HIF3A, Length 1,031 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-213ENST00000529542 WASHC2CQ9Y4E1 1318 aa22.71■■□□□ 1.23
HIF3A-213ENST00000529542 VPS8Q8N3P4 1428 aa22.71■■□□□ 1.23
HIF3A-213ENST00000529542 ARHGEF5Q12774 1597 aa22.71■■□□□ 1.23
HIF3A-213ENST00000529542 KDM5DQ9BY66 1539 aa22.69■■□□□ 1.22
HIF3A-213ENST00000529542 PZPP20742 1482 aa22.68■■□□□ 1.22
HIF3A-213ENST00000529542 LRRC9Q6ZRR7 1453 aa22.68■■□□□ 1.22
HIF3A-213ENST00000529542 TNRQ92752 1358 aa22.68■■□□□ 1.22
HIF3A-213ENST00000529542 ZNF335Q9H4Z2 1342 aaPredicted RBP22.67■■□□□ 1.22
HIF3A-213ENST00000529542 MAP3K1Q13233 1512 aa22.66■■□□□ 1.22
HIF3A-213ENST00000529542 DNMT1P26358 1616 aaKnown RBP22.64■■□□□ 1.22
HIF3A-213ENST00000529542 DISP3Q9P2K9 1392 aa22.64■■□□□ 1.22
HIF3A-213ENST00000529542 FBXO31Q5XUX0 539 aaPredicted RBP22.64■■□□□ 1.21
HIF3A-213ENST00000529542 THEMISQ8N1K5 641 aaPredicted RBP22.63■■□□□ 1.21
HIF3A-213ENST00000529542 MIA2Q96PC5 1412 aa22.63■■□□□ 1.21
HIF3A-213ENST00000529542 NLRP1Q9C000 1473 aa22.61■■□□□ 1.21
HIF3A-213ENST00000529542 ANKLE2Q86XL3 938 aa22.61■■□□□ 1.21
HIF3A-213ENST00000529542 LOC105371045A0A1W2PR82 267 aa22.6■■□□□ 1.21
HIF3A-213ENST00000529542 MAST1Q9Y2H9 1570 aa22.59■■□□□ 1.21
HIF3A-213ENST00000529542 UBAP1LF5GYI3 381 aa22.59■■□□□ 1.21
HIF3A-213ENST00000529542 MYOM3Q5VTT5 1437 aa22.57■■□□□ 1.2
HIF3A-213ENST00000529542 KANK4Q5T7N3 995 aaPredicted RBP22.56■■□□□ 1.2
HIF3A-213ENST00000529542 RNF17Q9BXT8 1623 aaKnown RBP22.54■■□□□ 1.2
HIF3A-213ENST00000529542 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.53■■□□□ 1.2
HIF3A-213ENST00000529542 CPS1P31327 1500 aa22.53■■□□□ 1.2
HIF3A-213ENST00000529542 UGGT1Q9NYU2 1555 aa22.53■■□□□ 1.2
HIF3A-213ENST00000529542 POLR1AO95602 1720 aaPredicted RBP22.53■■□□□ 1.2
HIF3A-213ENST00000529542 EIF2AK4Q9P2K8 1649 aaKnown RBP22.53■■□□□ 1.2
HIF3A-213ENST00000529542 ZC3H13Q5T200 1668 aaKnown RBP22.52■■□□□ 1.2
HIF3A-213ENST00000529542 APLP2Q06481 763 aa22.51■■□□□ 1.19
HIF3A-213ENST00000529542 NEURL4Q96JN8 1562 aa22.5■■□□□ 1.19
HIF3A-213ENST00000529542 MED14O60244 1454 aa22.5■■□□□ 1.19
HIF3A-213ENST00000529542 SHANK2Q9UPX8 1470 aa22.5■■□□□ 1.19
HIF3A-213ENST00000529542 ABCC3O15438 1527 aa22.5■■□□□ 1.19
HIF3A-213ENST00000529542 TOM1O60784 492 aa22.49■■□□□ 1.19
HIF3A-213ENST00000529542 DEPDC5O75140 1603 aa22.49■■□□□ 1.19
HIF3A-213ENST00000529542 DUOX2Q9NRD8 1548 aa22.48■■□□□ 1.19
HIF3A-213ENST00000529542 SPATA31D1Q6ZQQ2 1576 aa22.48■■□□□ 1.19
HIF3A-213ENST00000529542 ILDR2Q71H61 639 aa22.48■■□□□ 1.19
HIF3A-213ENST00000529542 SOCS7O14512 581 aa22.47■■□□□ 1.19
HIF3A-213ENST00000529542 NPHP4O75161 1426 aaPredicted RBP22.47■■□□□ 1.19
HIF3A-213ENST00000529542 ERVK-7P63135 1459 aa22.45■■□□□ 1.18
HIF3A-213ENST00000529542 ARHGAP31Q2M1Z3 1444 aa22.42■■□□□ 1.18
HIF3A-213ENST00000529542 ERBINQ96RT1 1412 aa22.42■■□□□ 1.18
HIF3A-213ENST00000529542 KIF15Q9NS87 1388 aa22.42■■□□□ 1.18
HIF3A-213ENST00000529542 MROH1Q8NDA8 1641 aa22.41■■□□□ 1.18
HIF3A-213ENST00000529542 VWDEQ8N2E2 1590 aa22.4■■□□□ 1.18
HIF3A-213ENST00000529542 ABCC5O15440 1437 aa22.4■■□□□ 1.18
HIF3A-213ENST00000529542 RRP7BPQ9NSQ0 103 aa22.38■■□□□ 1.17
HIF3A-213ENST00000529542 SCAF1Q9H7N4 1312 aaKnown RBP22.37■■□□□ 1.17
HIF3A-213ENST00000529542 IQGAP1P46940 1657 aa22.37■■□□□ 1.17
HIF3A-213ENST00000529542 KANK1Q14678 1352 aa22.37■■□□□ 1.17
HIF3A-213ENST00000529542 PRDM15P57071 1507 aaPredicted RBP22.36■■□□□ 1.17
HIF3A-213ENST00000529542 PTPN23Q9H3S7 1636 aa22.36■■□□□ 1.17
HIF3A-213ENST00000529542 PIP4K2BP78356 416 aa22.36■■□□□ 1.17
HIF3A-213ENST00000529542 DAPK1P53355 1430 aa22.35■■□□□ 1.17
HIF3A-213ENST00000529542 FGD6Q6ZV73 1430 aa22.34■■□□□ 1.17
HIF3A-213ENST00000529542 ANKRD30AQ9BXX3 1397 aa22.34■■□□□ 1.17
HIF3A-213ENST00000529542 CEP152O94986 1710 aa22.34■■□□□ 1.17
HIF3A-213ENST00000529542 HSPA1LP34931 641 aa22.33■■□□□ 1.17
HIF3A-213ENST00000529542 SCAF11Q99590 1463 aaKnown RBP22.33■■□□□ 1.16
HIF3A-213ENST00000529542 CROCC2H7BZ55 1655 aa22.33■■□□□ 1.16
HIF3A-213ENST00000529542 EID1Q9Y6B2 187 aa22.32■■□□□ 1.16
HIF3A-213ENST00000529542 ARHGAP23Q9P227 1491 aa22.31■■□□□ 1.16
HIF3A-213ENST00000529542 TXNDC2Q86VQ3 553 aa22.31■■□□□ 1.16
HIF3A-213ENST00000529542 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.31■■□□□ 1.16
HIF3A-213ENST00000529542 UBR1Q8IWV7 1749 aa22.31■■□□□ 1.16
HIF3A-213ENST00000529542 SLIT1O75093 1534 aa22.31■■□□□ 1.16
HIF3A-213ENST00000529542 CFAP65Q6ZU64 1925 aaKnown RBP22.29■■□□□ 1.16
HIF3A-213ENST00000529542 LRRC7Q96NW7 1537 aa22.28■■□□□ 1.16
HIF3A-213ENST00000529542 SYNMO15061 1565 aa22.27■■□□□ 1.16
HIF3A-213ENST00000529542 LTKP29376 864 aa22.27■■□□□ 1.16
HIF3A-213ENST00000529542 STAG3Q9UJ98 1225 aa22.27■■□□□ 1.16
HIF3A-213ENST00000529542 LMTK2Q8IWU2 1503 aa22.26■■□□□ 1.15
HIF3A-213ENST00000529542 CHIC2Q9UKJ5 165 aa22.25■■□□□ 1.15
HIF3A-213ENST00000529542 TMEM2Q9UHN6 1383 aa22.24■■□□□ 1.15
HIF3A-213ENST00000529542 KDM5AP29375 1690 aaKnown RBP22.21■■□□□ 1.15
HIF3A-213ENST00000529542 IDI1Q13907 227 aa22.21■■□□□ 1.15
HIF3A-213ENST00000529542 ADGRL2O95490 1459 aa22.21■■□□□ 1.15
HIF3A-213ENST00000529542 ALKQ9UM73 1620 aa22.2■■□□□ 1.15
HIF3A-213ENST00000529542 STRCP1A6NGW2 1772 aa22.2■■□□□ 1.14
HIF3A-213ENST00000529542 SLC52A1Q9NWF4 448 aa22.2■■□□□ 1.14
HIF3A-213ENST00000529542 PIK3C2BO00750 1634 aa22.18■■□□□ 1.14
HIF3A-213ENST00000529542 MED1Q15648 1581 aaPredicted RBP22.18■■□□□ 1.14
HIF3A-213ENST00000529542 EFCAB6Q5THR3 1501 aa22.18■■□□□ 1.14
HIF3A-213ENST00000529542 NOS1P29475 1434 aa22.17■■□□□ 1.14
HIF3A-213ENST00000529542 FAM50AQ14320 339 aaKnown RBP22.15■■□□□ 1.14
HIF3A-213ENST00000529542 RPRD2Q5VT52 1461 aaKnown RBP22.15■■□□□ 1.14
HIF3A-213ENST00000529542 ANKRD50Q9ULJ7 1429 aa22.14■■□□□ 1.13
HIF3A-213ENST00000529542 KCNA6P17658 529 aa22.13■■□□□ 1.13
HIF3A-213ENST00000529542 HDGFP51858 240 aaKnown RBP22.12■■□□□ 1.13
HIF3A-213ENST00000529542 PHF23Q9BUL5 403 aaPredicted RBP22.12■■□□□ 1.13
HIF3A-213ENST00000529542 TET3O43151 1660 aa22.08■■□□□ 1.13
HIF3A-213ENST00000529542 FAM135BQ49AJ0 1406 aa22.08■■□□□ 1.13
HIF3A-213ENST00000529542 ADGRB3O60242 1522 aa22.08■■□□□ 1.13
HIF3A-213ENST00000529542 TMEM94Q12767 1356 aa22.07■■□□□ 1.12
HIF3A-213ENST00000529542 PROSER2Q86WR7 435 aaPredicted RBP22.06■■□□□ 1.12
HIF3A-213ENST00000529542 SLC26A8Q96RN1 970 aa22.06■■□□□ 1.12
HIF3A-213ENST00000529542 BCANQ96GW7 911 aa22.04■■□□□ 1.12
HIF3A-213ENST00000529542 XIRP1Q702N8 1843 aaKnown RBP22.03■■□□□ 1.12
HIF3A-213ENST00000529542 NKTRP30414 1462 aaKnown RBP22.03■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms