RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 DOK7Q18PE1 504 aa9.25□□□□□ -0.93
CD44-220ENST00000525688 TSR1Q2NL82 804 aaKnown RBP9.25□□□□□ -0.93
CD44-220ENST00000525688 CERKQ8TCT0 537 aa9.25□□□□□ -0.93
CD44-220ENST00000525688 RBM33Q96EV2 1170 aaKnown RBP9.25□□□□□ -0.93
CD44-220ENST00000525688 ZSWIM6Q9HCJ5 1215 aa9.25□□□□□ -0.93
CD44-220ENST00000525688 PLEKHG3A1L390 1219 aa9.24□□□□□ -0.93
CD44-220ENST00000525688 HOXB3P14651 431 aaPredicted RBP9.24□□□□□ -0.93
CD44-220ENST00000525688 ZDHHC16Q969W1 377 aa9.22□□□□□ -0.93
CD44-220ENST00000525688 TMUB1Q9BVT8 246 aa9.22□□□□□ -0.93
CD44-220ENST00000525688 POTEB2H3BUK9 544 aa9.21□□□□□ -0.94
CD44-220ENST00000525688 TTLL12Q14166 644 aaPredicted RBP9.21□□□□□ -0.94
CD44-220ENST00000525688 C6orf132Q5T0Z8 1188 aa9.21□□□□□ -0.94
CD44-220ENST00000525688 GPR153Q6NV75 609 aa9.21□□□□□ -0.94
CD44-220ENST00000525688 GOPCQ9HD26 462 aa9.21□□□□□ -0.94
CD44-220ENST00000525688 RIMBP2O15034 1052 aa9.2□□□□□ -0.94
CD44-220ENST00000525688 GIGYF2Q6Y7W6 1299 aaKnown RBP9.2□□□□□ -0.94
CD44-220ENST00000525688 RBM27Q9P2N5 1060 aaKnown RBP9.2□□□□□ -0.94
CD44-220ENST00000525688 NUDT7P0C024 238 aa9.19□□□□□ -0.94
CD44-220ENST00000525688 CLCN1P35523 988 aa9.19□□□□□ -0.94
CD44-220ENST00000525688 ARSIQ5FYB1 569 aa9.19□□□□□ -0.94
CD44-220ENST00000525688 MAMSTRQ6ZN01 415 aa9.19□□□□□ -0.94
CD44-220ENST00000525688 ZNF454Q8N9F8 522 aa9.19□□□□□ -0.94
CD44-220ENST00000525688 REPIN1Q9BWE0 567 aaKnown RBP9.19□□□□□ -0.94
CD44-220ENST00000525688 OATP04181 439 aa9.18□□□□□ -0.94
CD44-220ENST00000525688 TTC13Q8NBP0 860 aa9.18□□□□□ -0.94
CD44-220ENST00000525688 PHOX2BQ99453 314 aa9.18□□□□□ -0.94
CD44-220ENST00000525688 SCUBE2Q9NQ36 999 aa9.18□□□□□ -0.94
CD44-220ENST00000525688 MS4A1P11836 297 aa9.17□□□□□ -0.94
CD44-220ENST00000525688 KHSRPQ92945 711 aaKnown RBP eCLIP9.17□□□□□ -0.94
CD44-220ENST00000525688 GPCPD1Q9NPB8 672 aa9.17□□□□□ -0.94
CD44-220ENST00000525688 ADAM33Q9BZ11 813 aa9.16□□□□□ -0.94
CD44-220ENST00000525688 PADI6Q6TGC4 694 aa9.15□□□□□ -0.94
CD44-220ENST00000525688 METTL3Q86U44 580 aaKnown RBP9.15□□□□□ -0.94
CD44-220ENST00000525688 ADGRG1Q9Y653 693 aa9.15□□□□□ -0.94
CD44-220ENST00000525688 PSDA5PKW4 1024 aaPredicted RBP9.14□□□□□ -0.95
CD44-220ENST00000525688 MDM2Q00987 491 aaPredicted RBP9.13□□□□□ -0.95
CD44-220ENST00000525688 ZNF710Q8N1W2 664 aa9.13□□□□□ -0.95
CD44-220ENST00000525688 PXYLP1Q8TE99 480 aa9.13□□□□□ -0.95
CD44-220ENST00000525688 PRSS12P56730 875 aa9.12□□□□□ -0.95
CD44-220ENST00000525688 SSTR3P32745 418 aaPredicted RBP9.11□□□□□ -0.95
CD44-220ENST00000525688 LHX6Q9UPM6 363 aa9.11□□□□□ -0.95
CD44-220ENST00000525688 FAM161AQ3B820 660 aa9.1□□□□□ -0.95
CD44-220ENST00000525688 SH3D19Q5HYK7 790 aa9.1□□□□□ -0.95
CD44-220ENST00000525688 PPP4R3BQ5MIZ7 849 aa9.1□□□□□ -0.95
CD44-220ENST00000525688 CDCA7LQ96GN5 454 aa9.1□□□□□ -0.95
CD44-220ENST00000525688 BCL2L12Q9HB09 334 aa9.1□□□□□ -0.95
CD44-220ENST00000525688 SNPHO15079 494 aa9.09□□□□□ -0.95
CD44-220ENST00000525688 FAM217BQ9NTX9 383 aaPredicted RBP9.09□□□□□ -0.95
CD44-220ENST00000525688 RBM46Q8TBY0 533 aaKnown RBP9.08□□□□□ -0.96
CD44-220ENST00000525688 HOXB1P14653 301 aaPredicted RBP9.07□□□□□ -0.96
CD44-220ENST00000525688 PCMTD1Q96MG8 357 aaPredicted RBP9.07□□□□□ -0.96
CD44-220ENST00000525688 RSPH6AQ9H0K4 717 aa9.07□□□□□ -0.96
CD44-220ENST00000525688 COL9A1P20849 921 aa9.06□□□□□ -0.96
CD44-220ENST00000525688 BEGAINQ9BUH8 593 aa9.06□□□□□ -0.96
CD44-220ENST00000525688 ZMYND15Q9H091 742 aa9.06□□□□□ -0.96
CD44-220ENST00000525688 PPP1R3GB7ZBB8 358 aa9.05□□□□□ -0.96
CD44-220ENST00000525688 PTPREP23469 700 aa9.05□□□□□ -0.96
CD44-220ENST00000525688 SKIV2LQ15477 1246 aaKnown RBP9.05□□□□□ -0.96
CD44-220ENST00000525688 EYA1Q99502 592 aa9.05□□□□□ -0.96
CD44-220ENST00000525688 FAM198AQ9UFP1 575 aa9.05□□□□□ -0.96
CD44-220ENST00000525688 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.04□□□□□ -0.96
CD44-220ENST00000525688 FLIIQ13045 1269 aa9.04□□□□□ -0.96
CD44-220ENST00000525688 NLRP7Q8WX94 980 aa9.03□□□□□ -0.96
CD44-220ENST00000525688 ARXQ96QS3 562 aa9.03□□□□□ -0.96
CD44-220ENST00000525688 ONECUT3O60422 494 aaPredicted RBP9.02□□□□□ -0.97
CD44-220ENST00000525688 TSKSQ9UJT2 592 aa9.02□□□□□ -0.97
CD44-220ENST00000525688 RCCD1A6NED2 376 aa9.01□□□□□ -0.97
CD44-220ENST00000525688 TRIM6-TRIM34B2RNG4 842 aa9□□□□□ -0.97
CD44-220ENST00000525688 DIXDC1Q155Q3 683 aa9□□□□□ -0.97
CD44-220ENST00000525688 NBPF26B4DH59 902 aa8.98□□□□□ -0.97
CD44-220ENST00000525688 SUPT5HO00267 1087 aaKnown RBP8.98□□□□□ -0.97
CD44-220ENST00000525688 MYSM1Q5VVJ2 828 aa8.98□□□□□ -0.97
CD44-220ENST00000525688 NUDT18Q6ZVK8 323 aa8.98□□□□□ -0.97
CD44-220ENST00000525688 PACS2Q86VP3 889 aa8.98□□□□□ -0.97
CD44-220ENST00000525688 TATDN2Q93075 761 aa8.98□□□□□ -0.97
CD44-220ENST00000525688 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.98□□□□□ -0.97
CD44-220ENST00000525688 DNAJB2P25686 324 aa8.97□□□□□ -0.97
CD44-220ENST00000525688 TBC1D2Q9BYX2 928 aa8.97□□□□□ -0.97
CD44-220ENST00000525688 C3orf80F5H4A9 247 aa8.96□□□□□ -0.98
CD44-220ENST00000525688 CD46P15529 392 aa8.96□□□□□ -0.98
CD44-220ENST00000525688 SULF1Q8IWU6 871 aa8.96□□□□□ -0.98
CD44-220ENST00000525688 PROCA1Q8NCQ7 364 aaPredicted RBP8.96□□□□□ -0.98
CD44-220ENST00000525688 OTUD5Q96G74 571 aa8.96□□□□□ -0.98
CD44-220ENST00000525688 TMEM134Q9H6X4 195 aa8.95□□□□□ -0.98
CD44-220ENST00000525688 POLR3EQ9NVU0 708 aa8.95□□□□□ -0.98
CD44-220ENST00000525688 PNMA3Q9UL41 463 aa8.95□□□□□ -0.98
CD44-220ENST00000525688 CLK2P49760 499 aaKnown RBP8.94□□□□□ -0.98
CD44-220ENST00000525688 TUSC1Q2TAM9 212 aa8.93□□□□□ -0.98
CD44-220ENST00000525688 KCNH8Q96L42 1107 aa8.93□□□□□ -0.98
CD44-220ENST00000525688 KCNK17Q96T54 332 aa8.93□□□□□ -0.98
CD44-220ENST00000525688 PROX2Q3B8N5 592 aa8.92□□□□□ -0.98
CD44-220ENST00000525688 SPIRE2Q8WWL2 714 aa8.92□□□□□ -0.98
CD44-220ENST00000525688 ZBED2Q9BTP6 218 aa8.92□□□□□ -0.98
CD44-220ENST00000525688 A6NJR5 290 aa8.91□□□□□ -0.98
CD44-220ENST00000525688 MCM6Q14566 821 aa8.91□□□□□ -0.98
CD44-220ENST00000525688 SLC4A5Q9BY07 1137 aa8.91□□□□□ -0.98
CD44-220ENST00000525688 GJA5P36382 358 aa8.9□□□□□ -0.98
CD44-220ENST00000525688 PPP2R2DQ66LE6 453 aa8.9□□□□□ -0.98
CD44-220ENST00000525688 DDX11L8A8MPP1 907 aa8.89□□□□□ -0.99
CD44-220ENST00000525688 ARHGAP33O14559 1287 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms