RNA–Protein interactions for RNA: ENST00000525209.5

CD44-213, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 574 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-213ENST00000525209 PCDH10Q9P2E7 1040 aa6.83□□□□□ -1.32
CD44-213ENST00000525209 SERPINA10Q9UK55 444 aa6.83□□□□□ -1.32
CD44-213ENST00000525209 TRIM66O15016 1216 aa6.82□□□□□ -1.32
CD44-213ENST00000525209 BRD2P25440 801 aaKnown RBP6.82□□□□□ -1.32
CD44-213ENST00000525209 EMP3P54852 163 aa6.82□□□□□ -1.32
CD44-213ENST00000525209 IRF5Q13568 498 aa6.81□□□□□ -1.32
CD44-213ENST00000525209 E2F4Q16254 413 aa6.81□□□□□ -1.32
CD44-213ENST00000525209 KRI1Q8N9T8 703 aaKnown RBP6.81□□□□□ -1.32
CD44-213ENST00000525209 RETREG2Q8NC44 543 aa6.81□□□□□ -1.32
CD44-213ENST00000525209 FBXW7Q969H0 707 aa6.81□□□□□ -1.32
CD44-213ENST00000525209 FAM117AQ9C073 453 aa6.81□□□□□ -1.32
CD44-213ENST00000525209 POTEB3A0JP26 581 aa6.8□□□□□ -1.32
CD44-213ENST00000525209 FAM205CA6NFA0 338 aa6.8□□□□□ -1.32
CD44-213ENST00000525209 PPP1R37O75864 691 aa6.8□□□□□ -1.32
CD44-213ENST00000525209 POTEBQ6S5H4 581 aa6.8□□□□□ -1.32
CD44-213ENST00000525209 FAM177A1Q8N128 213 aaPredicted RBP6.8□□□□□ -1.32
CD44-213ENST00000525209 CCDC97Q96F63 343 aaPredicted RBP6.8□□□□□ -1.32
CD44-213ENST00000525209 ZNF710Q8N1W2 664 aa6.79□□□□□ -1.32
CD44-213ENST00000525209 AMOTL2Q9Y2J4 779 aa6.79□□□□□ -1.32
CD44-213ENST00000525209 PLEKHG3A1L390 1219 aa6.78□□□□□ -1.32
CD44-213ENST00000525209 DOK7Q18PE1 504 aa6.78□□□□□ -1.32
CD44-213ENST00000525209 ZNF777Q9ULD5 760 aaPredicted RBP6.78□□□□□ -1.32
CD44-213ENST00000525209 HS3ST6Q96QI5 342 aa6.77□□□□□ -1.33
CD44-213ENST00000525209 DHX37Q8IY37 1157 aaKnown RBP6.76□□□□□ -1.33
CD44-213ENST00000525209 DDRGK1Q96HY6 314 aa6.76□□□□□ -1.33
CD44-213ENST00000525209 C2orf72A6NCS6 295 aa6.75□□□□□ -1.33
CD44-213ENST00000525209 HOXB1P14653 301 aaPredicted RBP6.75□□□□□ -1.33
CD44-213ENST00000525209 PATL2C9JE40 543 aaKnown RBP6.74□□□□□ -1.33
CD44-213ENST00000525209 PROSER2Q86WR7 435 aaPredicted RBP6.74□□□□□ -1.33
CD44-213ENST00000525209 UBE2Q2Q8WVN8 375 aa6.74□□□□□ -1.33
CD44-213ENST00000525209 KHSRPQ92945 711 aaKnown RBP eCLIP6.74□□□□□ -1.33
CD44-213ENST00000525209 POLR3GLQ9BT43 218 aa6.74□□□□□ -1.33
CD44-213ENST00000525209 RIMBP2O15034 1052 aa6.73□□□□□ -1.33
CD44-213ENST00000525209 FNBP4Q8N3X1 1017 aaPredicted RBP6.73□□□□□ -1.33
CD44-213ENST00000525209 GOPCQ9HD26 462 aa6.73□□□□□ -1.33
CD44-213ENST00000525209 ERBB3P21860 1342 aa6.73□□□□□ -1.33
CD44-213ENST00000525209 KIF3CO14782 793 aa6.72□□□□□ -1.33
CD44-213ENST00000525209 ARSIQ5FYB1 569 aa6.72□□□□□ -1.33
CD44-213ENST00000525209 GPIHBP1Q8IV16 184 aa6.72□□□□□ -1.33
CD44-213ENST00000525209 PDE4CQ08493 712 aa6.71□□□□□ -1.34
CD44-213ENST00000525209 MCM6Q14566 821 aa6.71□□□□□ -1.34
CD44-213ENST00000525209 GPR153Q6NV75 609 aa6.71□□□□□ -1.34
CD44-213ENST00000525209 CCDC125Q86Z20 511 aa6.71□□□□□ -1.34
CD44-213ENST00000525209 KRTAP3-3Q9BYR6 98 aa6.71□□□□□ -1.34
CD44-213ENST00000525209 KRTAP3-2Q9BYR7 98 aa6.71□□□□□ -1.34
CD44-213ENST00000525209 VARS2Q5ST30 1063 aaKnown RBP6.7□□□□□ -1.34
CD44-213ENST00000525209 TMC2Q8TDI7 906 aa6.7□□□□□ -1.34
CD44-213ENST00000525209 PPP1R15AO75807 674 aaPredicted RBP6.69□□□□□ -1.34
CD44-213ENST00000525209 RBM26Q5T8P6 1007 aaKnown RBP6.69□□□□□ -1.34
CD44-213ENST00000525209 SPNS2Q8IVW8 549 aa6.69□□□□□ -1.34
CD44-213ENST00000525209 KCNA1Q09470 495 aa6.68□□□□□ -1.34
CD44-213ENST00000525209 ZSWIM6Q9HCJ5 1215 aa6.68□□□□□ -1.34
CD44-213ENST00000525209 ARIH1Q9Y4X5 557 aaPredicted RBP6.68□□□□□ -1.34
CD44-213ENST00000525209 PPM1GO15355 546 aaPredicted RBP6.67□□□□□ -1.34
CD44-213ENST00000525209 IGSF5Q9NSI5 407 aa6.67□□□□□ -1.34
CD44-213ENST00000525209 CANXP27824 592 aaKnown RBP6.66□□□□□ -1.34
CD44-213ENST00000525209 NUDT7P0C024 238 aa6.65□□□□□ -1.34
CD44-213ENST00000525209 MMRN1Q13201 1228 aa6.65□□□□□ -1.34
CD44-213ENST00000525209 BRD1O95696 1058 aa6.64□□□□□ -1.35
CD44-213ENST00000525209 CCDC27Q2M243 656 aa6.64□□□□□ -1.35
CD44-213ENST00000525209 FAM9AQ8IZU1 332 aaPredicted RBP6.64□□□□□ -1.35
CD44-213ENST00000525209 POM121Q96HA1 1249 aa6.64□□□□□ -1.35
CD44-213ENST00000525209 PCDHGA4Q9Y5G9 962 aa6.64□□□□□ -1.35
CD44-213ENST00000525209 ACIN1Q9UKV3 1341 aaKnown RBP6.64□□□□□ -1.35
CD44-213ENST00000525209 PCMTD1Q96MG8 357 aaPredicted RBP6.63□□□□□ -1.35
CD44-213ENST00000525209 CWC22Q9HCG8 908 aaKnown RBP6.63□□□□□ -1.35
CD44-213ENST00000525209 UNCXA6NJT0 531 aa6.62□□□□□ -1.35
CD44-213ENST00000525209 DSG2Q14126 1118 aa6.62□□□□□ -1.35
CD44-213ENST00000525209 PLPP6Q8IY26 295 aa6.62□□□□□ -1.35
CD44-213ENST00000525209 AMHR2Q16671 573 aa6.61□□□□□ -1.35
CD44-213ENST00000525209 PARP9Q8IXQ6 854 aa6.61□□□□□ -1.35
CD44-213ENST00000525209 GPHNQ9NQX3 736 aaPredicted RBP6.61□□□□□ -1.35
CD44-213ENST00000525209 MYT1LQ9UL68 1186 aa6.61□□□□□ -1.35
CD44-213ENST00000525209 LHX6Q9UPM6 363 aa6.61□□□□□ -1.35
CD44-213ENST00000525209 SLC34A2O95436 690 aa6.6□□□□□ -1.35
CD44-213ENST00000525209 MLLT3P42568 568 aaPredicted RBP6.6□□□□□ -1.35
CD44-213ENST00000525209 FOXK1P85037 733 aa6.6□□□□□ -1.35
CD44-213ENST00000525209 ZNF687Q8N1G0 1237 aa6.6□□□□□ -1.35
CD44-213ENST00000525209 MINK1Q8N4C8 1332 aaPredicted RBP6.58□□□□□ -1.36
CD44-213ENST00000525209 NCKAP5LQ9HCH0 1330 aa6.58□□□□□ -1.36
CD44-213ENST00000525209 TAF7LQ5H9L4 462 aa6.58□□□□□ -1.36
CD44-213ENST00000525209 SND1Q7KZF4 910 aaKnown RBP eCLIP6.58□□□□□ -1.36
CD44-213ENST00000525209 RBM47A0AV96 593 aaKnown RBP6.57□□□□□ -1.36
CD44-213ENST00000525209 UPF1Q92900 1129 aaKnown RBP eCLIP6.57□□□□□ -1.36
CD44-213ENST00000525209 CRISPLD2Q9H0B8 497 aa6.57□□□□□ -1.36
CD44-213ENST00000525209 AXIN2Q9Y2T1 843 aa6.57□□□□□ -1.36
CD44-213ENST00000525209 GPR37O15354 613 aa6.56□□□□□ -1.36
CD44-213ENST00000525209 ANKRD13DQ6ZTN6 518 aa6.56□□□□□ -1.36
CD44-213ENST00000525209 CERS3Q8IU89 383 aa6.56□□□□□ -1.36
CD44-213ENST00000525209 PTCD2Q8WV60 388 aaKnown RBP6.56□□□□□ -1.36
CD44-213ENST00000525209 USTQ9Y2C2 406 aa6.56□□□□□ -1.36
CD44-213ENST00000525209 ZNF330Q9Y3S2 320 aaPredicted RBP6.56□□□□□ -1.36
CD44-213ENST00000525209 KDM4FA0A1W2PPD8 638 aa6.55□□□□□ -1.36
CD44-213ENST00000525209 PPP1R15BQ5SWA1 713 aa6.55□□□□□ -1.36
CD44-213ENST00000525209 POTEEQ6S8J3 1075 aa6.55□□□□□ -1.36
CD44-213ENST00000525209 CCDC102AQ96A19 550 aa6.55□□□□□ -1.36
CD44-213ENST00000525209 SPATA32Q96LK8 384 aa6.55□□□□□ -1.36
CD44-213ENST00000525209 COG6Q9Y2V7 657 aa6.55□□□□□ -1.36
CD44-213ENST00000525209 CADPSQ9ULU8 1353 aa6.55□□□□□ -1.36
CD44-213ENST00000525209 ARID4BQ4LE39 1312 aaPredicted RBP6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms