RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 FOXD4L5Q5VV16 416 aaPredicted RBP8.79□□□□□ -1
USP47-204ENST00000525078 FOXD4L4Q8WXT5 416 aaPredicted RBP8.79□□□□□ -1
USP47-204ENST00000525078 NUTM2FA1L443 756 aa8.78□□□□□ -1
USP47-204ENST00000525078 SPDYE16A6NNV3 312 aaPredicted RBP8.78□□□□□ -1
USP47-204ENST00000525078 GPR37O15354 613 aa8.78□□□□□ -1
USP47-204ENST00000525078 IGSF3O75054 1194 aa8.78□□□□□ -1
USP47-204ENST00000525078 RETREG2Q8NC44 543 aa8.78□□□□□ -1
USP47-204ENST00000525078 DPYSL4O14531 572 aa8.77□□□□□ -1.01
USP47-204ENST00000525078 FBXW7Q969H0 707 aa8.77□□□□□ -1.01
USP47-204ENST00000525078 ATP1B4Q9UN42 357 aaPredicted RBP8.77□□□□□ -1.01
USP47-204ENST00000525078 PPP1R15BQ5SWA1 713 aa8.75□□□□□ -1.01
USP47-204ENST00000525078 PDIA6Q15084 440 aa8.73□□□□□ -1.01
USP47-204ENST00000525078 ZNF428Q96B54 188 aa8.73□□□□□ -1.01
USP47-204ENST00000525078 POM121Q96HA1 1249 aa8.73□□□□□ -1.01
USP47-204ENST00000525078 FNBP4Q8N3X1 1017 aaPredicted RBP8.72□□□□□ -1.01
USP47-204ENST00000525078 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.72□□□□□ -1.01
USP47-204ENST00000525078 E9PSI1 815 aa8.71□□□□□ -1.02
USP47-204ENST00000525078 GNPATO15228 680 aa8.71□□□□□ -1.02
USP47-204ENST00000525078 IRF5Q13568 498 aa8.71□□□□□ -1.02
USP47-204ENST00000525078 PDCD7Q8N8D1 485 aaKnown RBP8.71□□□□□ -1.02
USP47-204ENST00000525078 TMEM121BQ9BXQ6 578 aaPredicted RBP8.71□□□□□ -1.02
USP47-204ENST00000525078 GRXCR2A6NFK2 248 aa8.7□□□□□ -1.02
USP47-204ENST00000525078 SNPHO15079 494 aa8.7□□□□□ -1.02
USP47-204ENST00000525078 PDE4CQ08493 712 aa8.7□□□□□ -1.02
USP47-204ENST00000525078 GIGYF2Q6Y7W6 1299 aaKnown RBP8.7□□□□□ -1.02
USP47-204ENST00000525078 MS4A4AQ96JQ5 239 aa8.7□□□□□ -1.02
USP47-204ENST00000525078 ACIN1Q9UKV3 1341 aaKnown RBP8.7□□□□□ -1.02
USP47-204ENST00000525078 SH3D19Q5HYK7 790 aa8.69□□□□□ -1.02
USP47-204ENST00000525078 HMGB1P09429 215 aaKnown RBP8.68□□□□□ -1.02
USP47-204ENST00000525078 MS4A1P11836 297 aa8.68□□□□□ -1.02
USP47-204ENST00000525078 MMRN1Q13201 1228 aa8.68□□□□□ -1.02
USP47-204ENST00000525078 SPNS2Q8IVW8 549 aa8.68□□□□□ -1.02
USP47-204ENST00000525078 MARVELD3Q96A59 401 aa8.68□□□□□ -1.02
USP47-204ENST00000525078 EMILIN3Q9NT22 766 aa8.68□□□□□ -1.02
USP47-204ENST00000525078 PATL2C9JE40 543 aaKnown RBP8.67□□□□□ -1.02
USP47-204ENST00000525078 GOLGA2Q08379 1002 aa8.67□□□□□ -1.02
USP47-204ENST00000525078 HIC1Q14526 733 aa8.67□□□□□ -1.02
USP47-204ENST00000525078 ZNF330Q9Y3S2 320 aaPredicted RBP8.67□□□□□ -1.02
USP47-204ENST00000525078 FCHSD2O94868 740 aa8.66□□□□□ -1.02
USP47-204ENST00000525078 GPHNQ9NQX3 736 aaPredicted RBP8.66□□□□□ -1.02
USP47-204ENST00000525078 PPP1R15AO75807 674 aaPredicted RBP8.65□□□□□ -1.02
USP47-204ENST00000525078 FECHP22830 423 aa8.64□□□□□ -1.03
USP47-204ENST00000525078 SKIV2LQ15477 1246 aaKnown RBP8.64□□□□□ -1.03
USP47-204ENST00000525078 L3MBTL3Q96JM7 780 aaPredicted RBP8.63□□□□□ -1.03
USP47-204ENST00000525078 COG6Q9Y2V7 657 aa8.63□□□□□ -1.03
USP47-204ENST00000525078 ILDR1Q86SU0 546 aaPredicted RBP8.62□□□□□ -1.03
USP47-204ENST00000525078 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.62□□□□□ -1.034e-7■■■□□ 17.7
USP47-204ENST00000525078 MYT1LQ9UL68 1186 aa8.62□□□□□ -1.03
USP47-204ENST00000525078 SPDYE5A6NIY4 337 aa8.61□□□□□ -1.03
USP47-204ENST00000525078 C3orf67Q6ZVT6 689 aa8.61□□□□□ -1.03
USP47-204ENST00000525078 POTEB3A0JP26 581 aa8.6□□□□□ -1.03
USP47-204ENST00000525078 POTEBQ6S5H4 581 aa8.6□□□□□ -1.03
USP47-204ENST00000525078 WWC1Q8IX03 1113 aa8.6□□□□□ -1.03
USP47-204ENST00000525078 CDK11BP21127 795 aaKnown RBP8.59□□□□□ -1.03
USP47-204ENST00000525078 DSG2Q14126 1118 aa8.59□□□□□ -1.03
USP47-204ENST00000525078 PROCA1Q8NCQ7 364 aaPredicted RBP8.59□□□□□ -1.03
USP47-204ENST00000525078 CALR3Q96L12 384 aaKnown RBP8.59□□□□□ -1.03
USP47-204ENST00000525078 REPIN1Q9BWE0 567 aaKnown RBP8.59□□□□□ -1.03
USP47-204ENST00000525078 CDK11AQ9UQ88 783 aaPredicted RBP8.59□□□□□ -1.03
USP47-204ENST00000525078 HSP90B1P14625 803 aaKnown RBP8.58□□□□□ -1.04
USP47-204ENST00000525078 DPY19L2Q6NUT2 758 aa8.58□□□□□ -1.04
USP47-204ENST00000525078 OXER1Q8TDS5 423 aa8.58□□□□□ -1.04
USP47-204ENST00000525078 POLR3EQ9NVU0 708 aa8.58□□□□□ -1.04
USP47-204ENST00000525078 OSBPP22059 807 aa8.57□□□□□ -1.04
USP47-204ENST00000525078 CLCN1P35523 988 aa8.57□□□□□ -1.04
USP47-204ENST00000525078 MAP3K9P80192 1104 aa8.57□□□□□ -1.04
USP47-204ENST00000525078 KCNA1Q09470 495 aa8.57□□□□□ -1.04
USP47-204ENST00000525078 USP35Q9P2H5 1018 aa8.57□□□□□ -1.04
USP47-204ENST00000525078 EMP3P54852 163 aa8.56□□□□□ -1.04
USP47-204ENST00000525078 BRD1O95696 1058 aa8.54□□□□□ -1.04
USP47-204ENST00000525078 SSTR3P32745 418 aaPredicted RBP8.54□□□□□ -1.04
USP47-204ENST00000525078 TMC2Q8TDI7 906 aa8.54□□□□□ -1.04
USP47-204ENST00000525078 BEGAINQ9BUH8 593 aa8.54□□□□□ -1.04
USP47-204ENST00000525078 KRTAP3-3Q9BYR6 98 aa8.54□□□□□ -1.04
USP47-204ENST00000525078 KRTAP3-2Q9BYR7 98 aa8.54□□□□□ -1.04
USP47-204ENST00000525078 GPCPD1Q9NPB8 672 aa8.54□□□□□ -1.04
USP47-204ENST00000525078 SNRKQ9NRH2 765 aa8.54□□□□□ -1.04
USP47-204ENST00000525078 MDM2Q00987 491 aaPredicted RBP8.53□□□□□ -1.04
USP47-204ENST00000525078 CCDC27Q2M243 656 aa8.53□□□□□ -1.04
USP47-204ENST00000525078 BANK1Q8NDB2 785 aa8.53□□□□□ -1.04
USP47-204ENST00000525078 HS3ST6Q96QI5 342 aa8.53□□□□□ -1.04
USP47-204ENST00000525078 FAM205CA6NFA0 338 aa8.52□□□□□ -1.05
USP47-204ENST00000525078 AMOTL2Q9Y2J4 779 aa8.52□□□□□ -1.05
USP47-204ENST00000525078 CSB-PGBD3P0DP91 1061 aa8.51□□□□□ -1.05
USP47-204ENST00000525078 PTGDRQ13258 359 aa8.51□□□□□ -1.05
USP47-204ENST00000525078 DDX12PQ92771 950 aa8.51□□□□□ -1.05
USP47-204ENST00000525078 GDPD2Q9HCC8 539 aa8.51□□□□□ -1.05
USP47-204ENST00000525078 HOXB3P14651 431 aaPredicted RBP8.5□□□□□ -1.05
USP47-204ENST00000525078 FOXK1P85037 733 aa8.5□□□□□ -1.05
USP47-204ENST00000525078 MYT1Q01538 1121 aa8.5□□□□□ -1.05
USP47-204ENST00000525078 GLMNQ92990 594 aa8.5□□□□□ -1.05
USP47-204ENST00000525078 PUS7Q96PZ0 661 aaKnown RBP8.5□□□□□ -1.05
USP47-204ENST00000525078 TBC1D12O60347 775 aa8.49□□□□□ -1.05
USP47-204ENST00000525078 RFC5P40937 340 aa8.49□□□□□ -1.05
USP47-204ENST00000525078 ABL2P42684 1182 aa8.49□□□□□ -1.05
USP47-204ENST00000525078 PBXIP1Q96AQ6 731 aa8.49□□□□□ -1.05
USP47-204ENST00000525078 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.49□□□□□ -1.05
USP47-204ENST00000525078 TMUB1Q9BVT8 246 aa8.49□□□□□ -1.05
USP47-204ENST00000525078 PRM3Q9NNZ6 103 aa8.49□□□□□ -1.05
USP47-204ENST00000525078 USTQ9Y2C2 406 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms