RNA–Protein interactions for RNA: ENST00000524927.1

NEDD8-203, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2 BASIC

Gene NEDD8, Length 653 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-203ENST00000524927 KHSRPQ92945 711 aaKnown RBP eCLIP13.68□□□□□ -0.224e-7■■□□□ 13.3
NEDD8-203ENST00000524927 MFRPQ9BY79 579 aa13.68□□□□□ -0.22
NEDD8-203ENST00000524927 POLA1P09884 1462 aaPredicted RBP13.67□□□□□ -0.22
NEDD8-203ENST00000524927 MAPKBP1O60336 1514 aa13.66□□□□□ -0.22
NEDD8-203ENST00000524927 STK24Q9Y6E0 443 aa13.66□□□□□ -0.22
NEDD8-203ENST00000524927 RIMBP2O15034 1052 aa13.65□□□□□ -0.22
NEDD8-203ENST00000524927 ARSIQ5FYB1 569 aa13.65□□□□□ -0.22
NEDD8-203ENST00000524927 GRIN2BQ13224 1484 aa13.64□□□□□ -0.23
NEDD8-203ENST00000524927 NLRP6P59044 892 aa13.64□□□□□ -0.23
NEDD8-203ENST00000524927 SPATA31D1Q6ZQQ2 1576 aa13.62□□□□□ -0.23
NEDD8-203ENST00000524927 ZSWIM6Q9HCJ5 1215 aa13.62□□□□□ -0.23
NEDD8-203ENST00000524927 RAD54L2Q9Y4B4 1467 aa13.61□□□□□ -0.23
NEDD8-203ENST00000524927 CEP170Q5SW79 1584 aa13.61□□□□□ -0.23
NEDD8-203ENST00000524927 SOGA1O94964 1423 aa13.6□□□□□ -0.23
NEDD8-203ENST00000524927 ZNF687Q8N1G0 1237 aa13.6□□□□□ -0.23
NEDD8-203ENST00000524927 STK25O00506 426 aa13.59□□□□□ -0.23
NEDD8-203ENST00000524927 KIF3CO14782 793 aa13.58□□□□□ -0.24
NEDD8-203ENST00000524927 TSPOAP1O95153 1857 aa13.57□□□□□ -0.24
NEDD8-203ENST00000524927 TOP2BQ02880 1626 aa13.56□□□□□ -0.24
NEDD8-203ENST00000524927 C2orf72A6NCS6 295 aa13.55□□□□□ -0.24
NEDD8-203ENST00000524927 TSHZ2Q9NRE2 1034 aa13.55□□□□□ -0.24
NEDD8-203ENST00000524927 SHROOM2Q13796 1616 aa13.53□□□□□ -0.24
NEDD8-203ENST00000524927 CERKQ8TCT0 537 aa13.52□□□□□ -0.25
NEDD8-203ENST00000524927 KDM2AQ9Y2K7 1162 aa13.52□□□□□ -0.25
NEDD8-203ENST00000524927 TOP2AP11388 1531 aaKnown RBP13.52□□□□□ -0.25
NEDD8-203ENST00000524927 ZNF316A6NFI3 1004 aaPredicted RBP13.5□□□□□ -0.25
NEDD8-203ENST00000524927 PPP1R37O75864 691 aa13.5□□□□□ -0.25
NEDD8-203ENST00000524927 RNF166Q96A37 237 aaPredicted RBP13.5□□□□□ -0.25
NEDD8-203ENST00000524927 NKX1-1Q15270 411 aaPredicted RBP13.48□□□□□ -0.25
NEDD8-203ENST00000524927 NUP160Q12769 1436 aa13.47□□□□□ -0.25
NEDD8-203ENST00000524927 BCANQ96GW7 911 aa13.47□□□□□ -0.25
NEDD8-203ENST00000524927 POTEEQ6S8J3 1075 aa13.46□□□□□ -0.25
NEDD8-203ENST00000524927 MYT1LQ9UL68 1186 aa13.46□□□□□ -0.25
NEDD8-203ENST00000524927 NUDT7P0C024 238 aa13.45□□□□□ -0.26
NEDD8-203ENST00000524927 GRIN2AQ12879 1464 aa13.44□□□□□ -0.26
NEDD8-203ENST00000524927 ANKRD13DQ6ZTN6 518 aa13.43□□□□□ -0.26
NEDD8-203ENST00000524927 COL17A1Q9UMD9 1497 aaPredicted RBP13.42□□□□□ -0.26
NEDD8-203ENST00000524927 PBRM1Q86U86 1689 aa13.42□□□□□ -0.26
NEDD8-203ENST00000524927 PRG4Q92954 1404 aaPredicted RBP13.41□□□□□ -0.26
NEDD8-203ENST00000524927 GTPBP6O43824 516 aaPredicted RBP13.41□□□□□ -0.26
NEDD8-203ENST00000524927 FGD5Q6ZNL6 1462 aa13.41□□□□□ -0.26
NEDD8-203ENST00000524927 LHX6Q9UPM6 363 aa13.4□□□□□ -0.26
NEDD8-203ENST00000524927 PCDHGA4Q9Y5G9 962 aa13.4□□□□□ -0.26
NEDD8-203ENST00000524927 PPRC1Q5VV67 1664 aaKnown RBP13.4□□□□□ -0.26
NEDD8-203ENST00000524927 ADCY10Q96PN6 1610 aa13.39□□□□□ -0.27
NEDD8-203ENST00000524927 AXIN2Q9Y2T1 843 aa13.38□□□□□ -0.27
NEDD8-203ENST00000524927 RYDENQ9NUL5 291 aaKnown RBP13.37□□□□□ -0.27
NEDD8-203ENST00000524927 PCF11O94913 1555 aaKnown RBP13.37□□□□□ -0.27
NEDD8-203ENST00000524927 CCDC88BA6NC98 1476 aa13.36□□□□□ -0.27
NEDD8-203ENST00000524927 LSM11P83369 360 aaKnown RBP eCLIP13.36□□□□□ -0.27
NEDD8-203ENST00000524927 SLC34A2O95436 690 aa13.35□□□□□ -0.27
NEDD8-203ENST00000524927 GLI2P10070 1586 aa13.35□□□□□ -0.27
NEDD8-203ENST00000524927 PTGER2P43116 358 aa13.33□□□□□ -0.28
NEDD8-203ENST00000524927 TMC2Q8TDI7 906 aa13.32□□□□□ -0.28
NEDD8-203ENST00000524927 JPH4Q96JJ6 628 aa13.32□□□□□ -0.28
NEDD8-203ENST00000524927 PTPRMP28827 1452 aa13.31□□□□□ -0.28
NEDD8-203ENST00000524927 TEX14Q8IWB6 1497 aa13.29□□□□□ -0.28
NEDD8-203ENST00000524927 ABCA5Q8WWZ7 1642 aa13.28□□□□□ -0.28
NEDD8-203ENST00000524927 ADAMTS12P58397 1594 aa13.27□□□□□ -0.29
NEDD8-203ENST00000524927 PLB1Q6P1J6 1458 aa13.25□□□□□ -0.29
NEDD8-203ENST00000524927 ABCA10Q8WWZ4 1543 aa13.23□□□□□ -0.29
NEDD8-203ENST00000524927 FHAD1B1AJZ9 1412 aa13.22□□□□□ -0.29
NEDD8-203ENST00000524927 ASXL2Q76L83 1435 aa13.22□□□□□ -0.29
NEDD8-203ENST00000524927 PBX2P40425 430 aa13.21□□□□□ -0.29
NEDD8-203ENST00000524927 PTCD2Q8WV60 388 aaKnown RBP13.21□□□□□ -0.29
NEDD8-203ENST00000524927 CUX1P39880 1505 aa13.2□□□□□ -0.3
NEDD8-203ENST00000524927 PLPP6Q8IY26 295 aa13.2□□□□□ -0.3
NEDD8-203ENST00000524927 ADAMTSL3P82987 1691 aa13.2□□□□□ -0.3
NEDD8-203ENST00000524927 FOXK1P85037 733 aa13.19□□□□□ -0.3
NEDD8-203ENST00000524927 DSG2Q14126 1118 aa13.19□□□□□ -0.3
NEDD8-203ENST00000524927 MAP3K4Q9Y6R4 1608 aa13.19□□□□□ -0.3
NEDD8-203ENST00000524927 KIF21BO75037 1637 aa13.18□□□□□ -0.3
NEDD8-203ENST00000524927 HSPA2P54652 639 aa13.18□□□□□ -0.3
NEDD8-203ENST00000524927 DMRTA1Q5VZB9 504 aa13.18□□□□□ -0.3
NEDD8-203ENST00000524927 PSEN2P49810 448 aa13.17□□□□□ -0.3
NEDD8-203ENST00000524927 GPHNQ9NQX3 736 aaPredicted RBP13.17□□□□□ -0.3
NEDD8-203ENST00000524927 KIAA0586Q9BVV6 1533 aa13.17□□□□□ -0.3
NEDD8-203ENST00000524927 ABCC2Q92887 1545 aa13.16□□□□□ -0.3
NEDD8-203ENST00000524927 ARHGAP33O14559 1287 aa13.15□□□□□ -0.3
NEDD8-203ENST00000524927 NBR1Q14596 966 aa13.15□□□□□ -0.3
NEDD8-203ENST00000524927 ADGRD1Q6QNK2 874 aa13.14□□□□□ -0.31
NEDD8-203ENST00000524927 EPRSP07814 1512 aaKnown RBP13.13□□□□□ -0.31
NEDD8-203ENST00000524927 RUSC2Q8N2Y8 1516 aa13.11□□□□□ -0.31
NEDD8-203ENST00000524927 HRO43593 1189 aa13.09□□□□□ -0.31
NEDD8-203ENST00000524927 PRKCSHP14314 528 aaPredicted RBP13.09□□□□□ -0.31
NEDD8-203ENST00000524927 IQSEC2Q5JU85 1478 aa13.07□□□□□ -0.32
NEDD8-203ENST00000524927 PTPRGP23470 1445 aa13.06□□□□□ -0.32
NEDD8-203ENST00000524927 WDR70Q9NW82 654 aa13.05□□□□□ -0.32
NEDD8-203ENST00000524927 MADDQ8WXG6 1647 aa13.05□□□□□ -0.32
NEDD8-203ENST00000524927 ERICH3Q5RHP9 1530 aa13.04□□□□□ -0.32
NEDD8-203ENST00000524927 PSDA5PKW4 1024 aaPredicted RBP13.04□□□□□ -0.32
NEDD8-203ENST00000524927 TPRNQ4KMQ1 711 aa13.04□□□□□ -0.32
NEDD8-203ENST00000524927 CADPS2Q86UW7 1296 aa13.03□□□□□ -0.32
NEDD8-203ENST00000524927 OXER1Q8TDS5 423 aa13.03□□□□□ -0.32
NEDD8-203ENST00000524927 BCORL1Q5H9F3 1711 aa13.02□□□□□ -0.32
NEDD8-203ENST00000524927 UPF1Q92900 1129 aaKnown RBP eCLIP13.02□□□□□ -0.33
NEDD8-203ENST00000524927 UHRF1BP1LA0JNW5 1464 aa13.02□□□□□ -0.33
NEDD8-203ENST00000524927 MAGI3Q5TCQ9 1506 aa13.02□□□□□ -0.33
NEDD8-203ENST00000524927 TK2O00142 265 aa13.01□□□□□ -0.33
NEDD8-203ENST00000524927 CRISPLD2Q9H0B8 497 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 120.6 ms