RNA–Protein interactions for RNA: ENST00000524556.1

CSTF3-204, Transcript of cleavage stimulation factor subunit 3, humanhuman

TSL 3

Gene CSTF3, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSTF3-204ENST00000524556 POLR1AO95602 1720 aaPredicted RBP23.7■■□□□ 1.38
CSTF3-204ENST00000524556 TNRQ92752 1358 aa23.69■■□□□ 1.38
CSTF3-204ENST00000524556 FBXO31Q5XUX0 539 aaPredicted RBP23.69■■□□□ 1.38
CSTF3-204ENST00000524556 PZPP20742 1482 aa23.67■■□□□ 1.38
CSTF3-204ENST00000524556 CCDC141Q6ZP82 1450 aa23.67■■□□□ 1.38
CSTF3-204ENST00000524556 KDM5DQ9BY66 1539 aa23.66■■□□□ 1.38
CSTF3-204ENST00000524556 FAM135AQ9P2D6 1515 aa23.66■■□□□ 1.38
CSTF3-204ENST00000524556 RSPH4AQ5TD94 716 aa23.66■■□□□ 1.38
CSTF3-204ENST00000524556 NEURL4Q96JN8 1562 aa23.65■■□□□ 1.38
CSTF3-204ENST00000524556 WASHC2CQ9Y4E1 1318 aa23.64■■□□□ 1.38
CSTF3-204ENST00000524556 CAMSAP2Q08AD1 1489 aa23.63■■□□□ 1.37
CSTF3-204ENST00000524556 CPS1P31327 1500 aa23.63■■□□□ 1.37
CSTF3-204ENST00000524556 NCOA2Q15596 1464 aa23.62■■□□□ 1.37
CSTF3-204ENST00000524556 SHANK2Q9UPX8 1470 aa23.62■■□□□ 1.37
CSTF3-204ENST00000524556 ANKLE2Q86XL3 938 aa23.6■■□□□ 1.37
CSTF3-204ENST00000524556 THEMISQ8N1K5 641 aaPredicted RBP23.6■■□□□ 1.37
CSTF3-204ENST00000524556 MIA2Q96PC5 1412 aa23.59■■□□□ 1.37
CSTF3-204ENST00000524556 TOM1O60784 492 aa23.59■■□□□ 1.37
CSTF3-204ENST00000524556 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.58■■□□□ 1.37
CSTF3-204ENST00000524556 HSPA1LP34931 641 aa23.58■■□□□ 1.37
CSTF3-204ENST00000524556 PIP4K2BP78356 416 aa23.58■■□□□ 1.37
CSTF3-204ENST00000524556 SCAF1Q9H7N4 1312 aaKnown RBP23.58■■□□□ 1.36
CSTF3-204ENST00000524556 ARHGEF5Q12774 1597 aa23.57■■□□□ 1.36
CSTF3-204ENST00000524556 NLRP1Q9C000 1473 aa23.57■■□□□ 1.36
CSTF3-204ENST00000524556 TSPY4P0CV99 314 aa23.56■■□□□ 1.36
CSTF3-204ENST00000524556 TSPY10P0CW01 314 aa23.56■■□□□ 1.36
CSTF3-204ENST00000524556 VWDEQ8N2E2 1590 aa23.56■■□□□ 1.36
CSTF3-204ENST00000524556 UGGT1Q9NYU2 1555 aa23.55■■□□□ 1.36
CSTF3-204ENST00000524556 DEPDC5O75140 1603 aa23.55■■□□□ 1.36
CSTF3-204ENST00000524556 MED14O60244 1454 aa23.54■■□□□ 1.36
CSTF3-204ENST00000524556 NPHP4O75161 1426 aaPredicted RBP23.53■■□□□ 1.36
CSTF3-204ENST00000524556 MED1Q15648 1581 aaPredicted RBP23.51■■□□□ 1.35
CSTF3-204ENST00000524556 RNF17Q9BXT8 1623 aaKnown RBP23.5■■□□□ 1.35
CSTF3-204ENST00000524556 IQGAP1P46940 1657 aa23.48■■□□□ 1.35
CSTF3-204ENST00000524556 ABCC3O15438 1527 aa23.48■■□□□ 1.35
CSTF3-204ENST00000524556 MAST1Q9Y2H9 1570 aa23.47■■□□□ 1.35
CSTF3-204ENST00000524556 ZC3H13Q5T200 1668 aaKnown RBP23.47■■□□□ 1.35
CSTF3-204ENST00000524556 ALKQ9UM73 1620 aa23.46■■□□□ 1.35
CSTF3-204ENST00000524556 STRCP1A6NGW2 1772 aa23.44■■□□□ 1.34
CSTF3-204ENST00000524556 EIF2AK4Q9P2K8 1649 aaKnown RBP23.44■■□□□ 1.34
CSTF3-204ENST00000524556 LRRC9Q6ZRR7 1453 aa23.43■■□□□ 1.34
CSTF3-204ENST00000524556 CFAP65Q6ZU64 1925 aaKnown RBP23.43■■□□□ 1.34
CSTF3-204ENST00000524556 ERVK-7P63135 1459 aa23.43■■□□□ 1.34
CSTF3-204ENST00000524556 MROH1Q8NDA8 1641 aa23.41■■□□□ 1.34
CSTF3-204ENST00000524556 LRRC7Q96NW7 1537 aa23.4■■□□□ 1.34
CSTF3-204ENST00000524556 CEP152O94986 1710 aa23.39■■□□□ 1.33
CSTF3-204ENST00000524556 VPS8Q8N3P4 1428 aa23.38■■□□□ 1.33
CSTF3-204ENST00000524556 UBR1Q8IWV7 1749 aa23.38■■□□□ 1.33
CSTF3-204ENST00000524556 SYNMO15061 1565 aa23.36■■□□□ 1.33
CSTF3-204ENST00000524556 KANK4Q5T7N3 995 aaPredicted RBP23.34■■□□□ 1.33
CSTF3-204ENST00000524556 PHF23Q9BUL5 403 aaPredicted RBP23.34■■□□□ 1.33
CSTF3-204ENST00000524556 DUOX2Q9NRD8 1548 aa23.33■■□□□ 1.33
CSTF3-204ENST00000524556 MYOM3Q5VTT5 1437 aa23.33■■□□□ 1.32
CSTF3-204ENST00000524556 SCAF11Q99590 1463 aaKnown RBP23.32■■□□□ 1.32
CSTF3-204ENST00000524556 MAP3K1Q13233 1512 aa23.32■■□□□ 1.32
CSTF3-204ENST00000524556 LTKP29376 864 aa23.3■■□□□ 1.32
CSTF3-204ENST00000524556 SENP3Q9H4L4 574 aaPredicted RBP23.3■■□□□ 1.32
CSTF3-204ENST00000524556 ARHGAP23Q9P227 1491 aa23.3■■□□□ 1.32
CSTF3-204ENST00000524556 SLIT1O75093 1534 aa23.29■■□□□ 1.32
CSTF3-204ENST00000524556 ARHGAP31Q2M1Z3 1444 aa23.29■■□□□ 1.32
CSTF3-204ENST00000524556 TXNDC2Q86VQ3 553 aa23.29■■□□□ 1.32
CSTF3-204ENST00000524556 PRDM15P57071 1507 aaPredicted RBP23.26■■□□□ 1.31
CSTF3-204ENST00000524556 XIRP1Q702N8 1843 aaKnown RBP23.26■■□□□ 1.31
CSTF3-204ENST00000524556 KIF15Q9NS87 1388 aa23.26■■□□□ 1.31
CSTF3-204ENST00000524556 LOC105371045A0A1W2PR82 267 aa23.25■■□□□ 1.31
CSTF3-204ENST00000524556 EID1Q9Y6B2 187 aa23.24■■□□□ 1.31
CSTF3-204ENST00000524556 ERBINQ96RT1 1412 aa23.24■■□□□ 1.31
CSTF3-204ENST00000524556 CROCC2H7BZ55 1655 aa23.23■■□□□ 1.31
CSTF3-204ENST00000524556 RRP7BPQ9NSQ0 103 aa23.23■■□□□ 1.31
CSTF3-204ENST00000524556 ABCC5O15440 1437 aa23.23■■□□□ 1.31
CSTF3-204ENST00000524556 PIK3C2BO00750 1634 aa23.22■■□□□ 1.31
CSTF3-204ENST00000524556 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.21■■□□□ 1.318e-9■■■□□ 14.6
CSTF3-204ENST00000524556 TMEM2Q9UHN6 1383 aa23.19■■□□□ 1.3
CSTF3-204ENST00000524556 PTPN23Q9H3S7 1636 aa23.19■■□□□ 1.3
CSTF3-204ENST00000524556 KANK1Q14678 1352 aa23.16■■□□□ 1.3
CSTF3-204ENST00000524556 KDM5AP29375 1690 aaKnown RBP23.16■■□□□ 1.3
CSTF3-204ENST00000524556 STAG3Q9UJ98 1225 aa23.16■■□□□ 1.3
CSTF3-204ENST00000524556 RGS17Q9UGC6 210 aaPredicted RBP23.15■■□□□ 1.3
CSTF3-204ENST00000524556 DAPK1P53355 1430 aa23.15■■□□□ 1.3
CSTF3-204ENST00000524556 FAM135BQ49AJ0 1406 aa23.14■■□□□ 1.29
CSTF3-204ENST00000524556 EFCAB6Q5THR3 1501 aa23.13■■□□□ 1.29
CSTF3-204ENST00000524556 IDI1Q13907 227 aa23.13■■□□□ 1.29
CSTF3-204ENST00000524556 LMTK2Q8IWU2 1503 aa23.13■■□□□ 1.29
CSTF3-204ENST00000524556 KCNA6P17658 529 aa23.11■■□□□ 1.29
CSTF3-204ENST00000524556 TMEM94Q12767 1356 aa23.11■■□□□ 1.29
CSTF3-204ENST00000524556 TET3O43151 1660 aa23.1■■□□□ 1.29
CSTF3-204ENST00000524556 ANKRD30AQ9BXX3 1397 aa23.09■■□□□ 1.29
CSTF3-204ENST00000524556 APLP2Q06481 763 aa23.08■■□□□ 1.29
CSTF3-204ENST00000524556 CHIC2Q9UKJ5 165 aa23.08■■□□□ 1.29
CSTF3-204ENST00000524556 FGD6Q6ZV73 1430 aa23.08■■□□□ 1.28
CSTF3-204ENST00000524556 PROSER2Q86WR7 435 aaPredicted RBP23.07■■□□□ 1.28
CSTF3-204ENST00000524556 SLC26A8Q96RN1 970 aa23.07■■□□□ 1.28
CSTF3-204ENST00000524556 NOS1P29475 1434 aa23.07■■□□□ 1.28
CSTF3-204ENST00000524556 ROBO1Q9Y6N7 1651 aa23.05■■□□□ 1.28
CSTF3-204ENST00000524556 ADGRB3O60242 1522 aa23.03■■□□□ 1.28
CSTF3-204ENST00000524556 RBM33Q96EV2 1170 aaKnown RBP23.03■■□□□ 1.28
CSTF3-204ENST00000524556 SLC52A1Q9NWF4 448 aa23.03■■□□□ 1.28
CSTF3-204ENST00000524556 NWD1Q149M9 1564 aa23.01■■□□□ 1.27
CSTF3-204ENST00000524556 NKTRP30414 1462 aaKnown RBP23■■□□□ 1.27
CSTF3-204ENST00000524556 POTEAQ6S8J7 498 aa23■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 86.6 ms