RNA–Protein interactions for RNA: ENST00000524204.1

NPM1-212, Transcript of nucleophosmin 1, humanhuman

TSL 2

Gene NPM1, Length 640 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPM1-212ENST00000524204 EMILIN3Q9NT22 766 aa13.06□□□□□ -0.32
NPM1-212ENST00000524204 KIAA1468Q9P260 1216 aa13.06□□□□□ -0.32
NPM1-212ENST00000524204 KCNC4Q03721 635 aa13.05□□□□□ -0.32
NPM1-212ENST00000524204 LAPTM4BQ86VI4 370 aa13.05□□□□□ -0.32
NPM1-212ENST00000524204 LARP6Q9BRS8 491 aaKnown RBP13.05□□□□□ -0.32
NPM1-212ENST00000524204 SEPT9Q9UHD8 586 aaPredicted RBP13.02□□□□□ -0.33
NPM1-212ENST00000524204 NYAP1Q6ZVC0 841 aa13.01□□□□□ -0.33
NPM1-212ENST00000524204 DDX27Q96GQ7 796 aaKnown RBP13.01□□□□□ -0.33
NPM1-212ENST00000524204 TYW1BQ6NUM6 668 aa12.98□□□□□ -0.33
NPM1-212ENST00000524204 MFSD10Q14728 455 aa12.97□□□□□ -0.33
NPM1-212ENST00000524204 RYDENQ9NUL5 291 aaKnown RBP12.97□□□□□ -0.33
NPM1-212ENST00000524204 GFRA3O60609 400 aa12.96□□□□□ -0.33
NPM1-212ENST00000524204 PHF14O94880 888 aa12.96□□□□□ -0.33
NPM1-212ENST00000524204 TRAF7Q6Q0C0 670 aa12.96□□□□□ -0.33
NPM1-212ENST00000524204 LAPTM4AQ15012 233 aa12.95□□□□□ -0.34
NPM1-212ENST00000524204 FBXW7Q969H0 707 aa12.95□□□□□ -0.34
NPM1-212ENST00000524204 ONECUT3O60422 494 aaPredicted RBP12.93□□□□□ -0.34
NPM1-212ENST00000524204 C6orf132Q5T0Z8 1188 aa12.93□□□□□ -0.34
NPM1-212ENST00000524204 GTPBP6O43824 516 aaPredicted RBP12.91□□□□□ -0.34
NPM1-212ENST00000524204 TSR3Q9UJK0 312 aaKnown RBP12.91□□□□□ -0.34
NPM1-212ENST00000524204 HPS5Q9UPZ3 1129 aa12.91□□□□□ -0.34
NPM1-212ENST00000524204 TRIM6-TRIM34B2RNG4 842 aa12.9□□□□□ -0.34
NPM1-212ENST00000524204 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.9□□□□□ -0.34
NPM1-212ENST00000524204 FAM98CQ17RN3 349 aaKnown RBP12.89□□□□□ -0.35
NPM1-212ENST00000524204 LRCH3Q96II8 777 aa12.86□□□□□ -0.35
NPM1-212ENST00000524204 PRKD2Q9BZL6 878 aa12.84□□□□□ -0.35
NPM1-212ENST00000524204 TJAP1Q5JTD0 557 aa12.83□□□□□ -0.36
NPM1-212ENST00000524204 CADPS2Q86UW7 1296 aa12.83□□□□□ -0.36
NPM1-212ENST00000524204 RBM33Q96EV2 1170 aaKnown RBP12.83□□□□□ -0.36
NPM1-212ENST00000524204 EPAS1Q99814 870 aa12.82□□□□□ -0.36
NPM1-212ENST00000524204 NRG2O14511 850 aaPredicted RBP12.8□□□□□ -0.36
NPM1-212ENST00000524204 TSKSQ9UJT2 592 aa12.8□□□□□ -0.36
NPM1-212ENST00000524204 PPP4CP60510 307 aa12.77□□□□□ -0.37
NPM1-212ENST00000524204 PPP1R18Q6NYC8 613 aa12.77□□□□□ -0.37
NPM1-212ENST00000524204 DPYSL4O14531 572 aa12.76□□□□□ -0.37
NPM1-212ENST00000524204 DDX12PQ92771 950 aa12.75□□□□□ -0.37
NPM1-212ENST00000524204 CAMK2BQ13554 666 aa12.73□□□□□ -0.37
NPM1-212ENST00000524204 TSR1Q2NL82 804 aaKnown RBP12.73□□□□□ -0.37
NPM1-212ENST00000524204 ZNF787Q6DD87 383 aa12.73□□□□□ -0.37
NPM1-212ENST00000524204 MTRQ99707 1265 aa12.73□□□□□ -0.37
NPM1-212ENST00000524204 SMAPO00193 183 aa12.72□□□□□ -0.37
NPM1-212ENST00000524204 SAMD7Q7Z3H4 446 aa12.72□□□□□ -0.37
NPM1-212ENST00000524204 ZNF516Q92618 1163 aa12.72□□□□□ -0.37
NPM1-212ENST00000524204 C3orf80F5H4A9 247 aa12.71□□□□□ -0.37
NPM1-212ENST00000524204 PACS2Q86VP3 889 aa12.71□□□□□ -0.37
NPM1-212ENST00000524204 V9GY48 417 aaPredicted RBP12.71□□□□□ -0.37
NPM1-212ENST00000524204 FAM198AQ9UFP1 575 aa12.7□□□□□ -0.38
NPM1-212ENST00000524204 ZNF775Q96BV0 537 aaPredicted RBP12.69□□□□□ -0.38
NPM1-212ENST00000524204 IL21Q9HBE4 155 aa12.68□□□□□ -0.38
NPM1-212ENST00000524204 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.67□□□□□ -0.38
NPM1-212ENST00000524204 EN1Q05925 392 aaPredicted RBP12.66□□□□□ -0.38
NPM1-212ENST00000524204 PDZRN3Q9UPQ7 1066 aa12.66□□□□□ -0.38
NPM1-212ENST00000524204 NKX2-3Q8TAU0 364 aa12.65□□□□□ -0.38
NPM1-212ENST00000524204 NBR1Q14596 966 aa12.64□□□□□ -0.39
NPM1-212ENST00000524204 MAP3K7O43318 606 aa12.63□□□□□ -0.39
NPM1-212ENST00000524204 CDCA7LQ96GN5 454 aa12.63□□□□□ -0.39
NPM1-212ENST00000524204 APLP1P51693 650 aa12.6□□□□□ -0.39
NPM1-212ENST00000524204 PRIM1P49642 420 aaKnown RBP12.59□□□□□ -0.39
NPM1-212ENST00000524204 PRSS12P56730 875 aa12.59□□□□□ -0.39
NPM1-212ENST00000524204 TATDN2Q93075 761 aa12.58□□□□□ -0.4
NPM1-212ENST00000524204 PNMA3Q9UL41 463 aa12.56□□□□□ -0.4
NPM1-212ENST00000524204 TRIM67Q6ZTA4 783 aa12.54□□□□□ -0.4
NPM1-212ENST00000524204 RNF40O75150 1001 aa12.52□□□□□ -0.41
NPM1-212ENST00000524204 PDIA6Q15084 440 aa12.52□□□□□ -0.41
NPM1-212ENST00000524204 POTECB2RU33 542 aa12.5□□□□□ -0.41
NPM1-212ENST00000524204 COPS2P61201 443 aa12.5□□□□□ -0.41
NPM1-212ENST00000524204 NUDT18Q6ZVK8 323 aa12.5□□□□□ -0.41
NPM1-212ENST00000524204 NBPF26B4DH59 902 aa12.49□□□□□ -0.41
NPM1-212ENST00000524204 EMID1Q96A84 441 aaPredicted RBP12.49□□□□□ -0.41
NPM1-212ENST00000524204 CERKQ8TCT0 537 aa12.46□□□□□ -0.41
NPM1-212ENST00000524204 CDHR5Q9HBB8 845 aa12.46□□□□□ -0.41
NPM1-212ENST00000524204 MYT1Q01538 1121 aa12.45□□□□□ -0.42
NPM1-212ENST00000524204 GGCXP38435 758 aa12.44□□□□□ -0.42
NPM1-212ENST00000524204 TMUB1Q9BVT8 246 aa12.44□□□□□ -0.42
NPM1-212ENST00000524204 ZPR1O75312 459 aa12.42□□□□□ -0.42
NPM1-212ENST00000524204 HDGFP51858 240 aaKnown RBP12.42□□□□□ -0.42
NPM1-212ENST00000524204 SWT1Q5T5J6 900 aaKnown RBP12.42□□□□□ -0.42
NPM1-212ENST00000524204 GRXCR2A6NFK2 248 aa12.41□□□□□ -0.42
NPM1-212ENST00000524204 SPDYE16A6NNV3 312 aaPredicted RBP12.41□□□□□ -0.42
NPM1-212ENST00000524204 RNF223E7ERA6 249 aa12.4□□□□□ -0.42
NPM1-212ENST00000524204 SLC19A1P41440 591 aa12.4□□□□□ -0.42
NPM1-212ENST00000524204 DCAF8L2P0C7V8 631 aa12.38□□□□□ -0.43
NPM1-212ENST00000524204 PKDCCQ504Y2 493 aa12.38□□□□□ -0.43
NPM1-212ENST00000524204 OSBPP22059 807 aa12.37□□□□□ -0.43
NPM1-212ENST00000524204 DGAT1O75907 488 aa12.36□□□□□ -0.43
NPM1-212ENST00000524204 SPRYD7Q5W111 196 aa12.36□□□□□ -0.43
NPM1-212ENST00000524204 TTC13Q8NBP0 860 aa12.36□□□□□ -0.43
NPM1-212ENST00000524204 RBM27Q9P2N5 1060 aaKnown RBP12.35□□□□□ -0.43
NPM1-212ENST00000524204 LCE2AQ5TA79 106 aaPredicted RBP12.34□□□□□ -0.43
NPM1-212ENST00000524204 SLF2Q8IX21 1173 aa12.34□□□□□ -0.43
NPM1-212ENST00000524204 PPEF1O14829 653 aaPredicted RBP12.33□□□□□ -0.44
NPM1-212ENST00000524204 ZNF598Q86UK7 904 aaKnown RBP12.33□□□□□ -0.44
NPM1-212ENST00000524204 NPDC1Q9NQX5 325 aaPredicted RBP12.33□□□□□ -0.44
NPM1-212ENST00000524204 PRR20EP86478 221 aa12.32□□□□□ -0.44
NPM1-212ENST00000524204 PRR20CP86479 221 aa12.32□□□□□ -0.44
NPM1-212ENST00000524204 PRR20DP86480 221 aa12.32□□□□□ -0.44
NPM1-212ENST00000524204 PRR20BP86481 221 aa12.32□□□□□ -0.44
NPM1-212ENST00000524204 PRR20AP86496 221 aa12.32□□□□□ -0.44
NPM1-212ENST00000524204 BLOC1S3Q6QNY0 202 aa12.32□□□□□ -0.44
NPM1-212ENST00000524204 TLL1O43897 1013 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 1122.1 ms