RNA–Protein interactions for RNA: ENST00000520497.1

VAPB-206, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 937 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-206ENST00000520497 KDM5DQ9BY66 1539 aa12.68□□□□□ -0.38
VAPB-206ENST00000520497 ERBINQ96RT1 1412 aa12.68□□□□□ -0.38
VAPB-206ENST00000520497 MAGI2Q86UL8 1455 aa12.66□□□□□ -0.38
VAPB-206ENST00000520497 IQGAP3Q86VI3 1631 aa12.66□□□□□ -0.38
VAPB-206ENST00000520497 RNF17Q9BXT8 1623 aaKnown RBP12.66□□□□□ -0.38
VAPB-206ENST00000520497 ACIN1Q9UKV3 1341 aaKnown RBP12.65□□□□□ -0.38
VAPB-206ENST00000520497 ZEB1P37275 1124 aaPredicted RBP12.65□□□□□ -0.38
VAPB-206ENST00000520497 MROH1Q8NDA8 1641 aa12.64□□□□□ -0.39
VAPB-206ENST00000520497 REREQ9P2R6 1566 aa12.64□□□□□ -0.39
VAPB-206ENST00000520497 ARHGEF40Q8TER5 1519 aa12.63□□□□□ -0.39
VAPB-206ENST00000520497 PZPP20742 1482 aa12.63□□□□□ -0.39
VAPB-206ENST00000520497 A2MP01023 1474 aa12.62□□□□□ -0.39
VAPB-206ENST00000520497 MAPK8IP2Q13387 824 aaPredicted RBP12.62□□□□□ -0.39
VAPB-206ENST00000520497 CCER1Q8TC90 406 aaPredicted RBP12.62□□□□□ -0.39
VAPB-206ENST00000520497 SIGLEC1Q9BZZ2 1709 aa12.62□□□□□ -0.39
VAPB-206ENST00000520497 PRDM15P57071 1507 aaPredicted RBP12.62□□□□□ -0.39
VAPB-206ENST00000520497 SCAF1Q9H7N4 1312 aaKnown RBP12.62□□□□□ -0.39
VAPB-206ENST00000520497 CLSPNQ9HAW4 1339 aa12.62□□□□□ -0.39
VAPB-206ENST00000520497 VWDEQ8N2E2 1590 aa12.61□□□□□ -0.39
VAPB-206ENST00000520497 DHX29Q7Z478 1369 aaKnown RBP12.61□□□□□ -0.39
VAPB-206ENST00000520497 ILDR1Q86SU0 546 aaPredicted RBP12.61□□□□□ -0.39
VAPB-206ENST00000520497 YEATS2Q9ULM3 1422 aa12.61□□□□□ -0.39
VAPB-206ENST00000520497 FAM135AQ9P2D6 1515 aa12.6□□□□□ -0.39
VAPB-206ENST00000520497 CEP152O94986 1710 aa12.59□□□□□ -0.39
VAPB-206ENST00000520497 ADAMTSL3P82987 1691 aa12.59□□□□□ -0.39
VAPB-206ENST00000520497 TET3O43151 1660 aa12.58□□□□□ -0.4
VAPB-206ENST00000520497 ATP10AO60312 1499 aa12.57□□□□□ -0.4
VAPB-206ENST00000520497 ZC3H13Q5T200 1668 aaKnown RBP12.57□□□□□ -0.4
VAPB-206ENST00000520497 PTPRMP28827 1452 aa12.56□□□□□ -0.4
VAPB-206ENST00000520497 E9PCH4 1651 aa12.56□□□□□ -0.4
VAPB-206ENST00000520497 AGLP35573 1532 aa12.56□□□□□ -0.4
VAPB-206ENST00000520497 ARID4BQ4LE39 1312 aaPredicted RBP12.56□□□□□ -0.4
VAPB-206ENST00000520497 MADDQ8WXG6 1647 aa12.55□□□□□ -0.4
VAPB-206ENST00000520497 TRIM52Q96A61 297 aa12.55□□□□□ -0.4
VAPB-206ENST00000520497 MYT1LQ9UL68 1186 aa12.55□□□□□ -0.4
VAPB-206ENST00000520497 NUP155O75694 1391 aa12.55□□□□□ -0.4
VAPB-206ENST00000520497 DMRT2Q9Y5R5 561 aa12.54□□□□□ -0.4
VAPB-206ENST00000520497 CFAP65Q6ZU64 1925 aaKnown RBP12.54□□□□□ -0.4
VAPB-206ENST00000520497 SPHKAPQ2M3C7 1700 aa12.54□□□□□ -0.4
VAPB-206ENST00000520497 LMTK2Q8IWU2 1503 aa12.53□□□□□ -0.4
VAPB-206ENST00000520497 CACNB1Q02641 598 aaPredicted RBP12.53□□□□□ -0.4
VAPB-206ENST00000520497 MPHOSPH9Q99550 1183 aa12.53□□□□□ -0.4
VAPB-206ENST00000520497 CAMSAP1Q5T5Y3 1602 aa12.52□□□□□ -0.4
VAPB-206ENST00000520497 EFCAB6Q5THR3 1501 aa12.52□□□□□ -0.41
VAPB-206ENST00000520497 RIMS1Q86UR5 1692 aaKnown RBP12.51□□□□□ -0.41
VAPB-206ENST00000520497 KIF3BO15066 747 aa12.5□□□□□ -0.41
VAPB-206ENST00000520497 MLECQ14165 292 aa12.5□□□□□ -0.41
VAPB-206ENST00000520497 SLC4A1APQ9BWU0 796 aaKnown RBP12.5□□□□□ -0.41
VAPB-206ENST00000520497 ANKRD30BQ9BXX2 1392 aa12.5□□□□□ -0.41
VAPB-206ENST00000520497 ABCC3O15438 1527 aa12.49□□□□□ -0.41
VAPB-206ENST00000520497 KANK1Q14678 1352 aa12.47□□□□□ -0.41
VAPB-206ENST00000520497 CLTCQ00610 1675 aaKnown RBP12.47□□□□□ -0.41
VAPB-206ENST00000520497 HSPA2P54652 639 aa12.46□□□□□ -0.41
VAPB-206ENST00000520497 PKD2Q13563 968 aa12.46□□□□□ -0.41
VAPB-206ENST00000520497 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.46□□□□□ -0.412e-8■□□□□ 8.9
VAPB-206ENST00000520497 RPRD2Q5VT52 1461 aaKnown RBP12.46□□□□□ -0.42
VAPB-206ENST00000520497 LMTK3Q96Q04 1460 aa12.46□□□□□ -0.42
VAPB-206ENST00000520497 TRPM2O94759 1503 aa12.45□□□□□ -0.42
VAPB-206ENST00000520497 MROH2AA6NES4 1674 aa12.45□□□□□ -0.42
VAPB-206ENST00000520497 PREX1Q8TCU6 1659 aa12.45□□□□□ -0.42
VAPB-206ENST00000520497 PLA2R1Q13018 1463 aa12.44□□□□□ -0.42
VAPB-206ENST00000520497 KIF1BO60333 1816 aa12.44□□□□□ -0.42
VAPB-206ENST00000520497 FER1L4A9Z1Z3 1794 aa12.43□□□□□ -0.42
VAPB-206ENST00000520497 SIN3AQ96ST3 1273 aa12.43□□□□□ -0.42
VAPB-206ENST00000520497 CLTCL1P53675 1640 aa12.43□□□□□ -0.42
VAPB-206ENST00000520497 PTPRTO14522 1441 aa12.43□□□□□ -0.42
VAPB-206ENST00000520497 CEBPAP49715 358 aaPredicted RBP12.42□□□□□ -0.42
VAPB-206ENST00000520497 ARHGAP31Q2M1Z3 1444 aa12.42□□□□□ -0.42
VAPB-206ENST00000520497 PIK3C2BO00750 1634 aa12.41□□□□□ -0.42
VAPB-206ENST00000520497 GGT6Q6P531 493 aa12.41□□□□□ -0.42
VAPB-206ENST00000520497 NPATQ14207 1427 aa12.4□□□□□ -0.42
VAPB-206ENST00000520497 PPP4R3CPQ6ZMV5 832 aa12.4□□□□□ -0.42
VAPB-206ENST00000520497 SYNMO15061 1565 aa12.39□□□□□ -0.43
VAPB-206ENST00000520497 TIMELESSQ9UNS1 1208 aa12.39□□□□□ -0.43
VAPB-206ENST00000520497 MYO5BQ9ULV0 1848 aa12.39□□□□□ -0.43
VAPB-206ENST00000520497 NEURL4Q96JN8 1562 aa12.39□□□□□ -0.43
VAPB-206ENST00000520497 WASHC2CQ9Y4E1 1318 aa12.37□□□□□ -0.43
VAPB-206ENST00000520497 CCDC144AA2RUR9 1427 aa12.37□□□□□ -0.43
VAPB-206ENST00000520497 IFT172Q9UG01 1749 aa12.37□□□□□ -0.43
VAPB-206ENST00000520497 NEUROD1Q13562 356 aa12.37□□□□□ -0.43
VAPB-206ENST00000520497 C3P01024 1663 aa12.37□□□□□ -0.43
VAPB-206ENST00000520497 NOS1P29475 1434 aa12.37□□□□□ -0.43
VAPB-206ENST00000520497 CNTLNQ9NXG0 1405 aa12.36□□□□□ -0.43
VAPB-206ENST00000520497 SPATA31D1Q6ZQQ2 1576 aa12.35□□□□□ -0.43
VAPB-206ENST00000520497 UGGT1Q9NYU2 1555 aa12.35□□□□□ -0.43
VAPB-206ENST00000520497 TONSLQ96HA7 1378 aa12.35□□□□□ -0.43
VAPB-206ENST00000520497 ERVK-7P63135 1459 aa12.34□□□□□ -0.43
VAPB-206ENST00000520497 PPLO60437 1756 aa12.33□□□□□ -0.44
VAPB-206ENST00000520497 SPATA31E1Q6ZUB1 1445 aa12.33□□□□□ -0.44
VAPB-206ENST00000520497 ADGRB3O60242 1522 aa12.32□□□□□ -0.44
VAPB-206ENST00000520497 FBXO41Q8TF61 875 aa12.31□□□□□ -0.44
VAPB-206ENST00000520497 KDM5AP29375 1690 aaKnown RBP12.31□□□□□ -0.44
VAPB-206ENST00000520497 TMEM131LA2VDJ0 1609 aa12.29□□□□□ -0.44
VAPB-206ENST00000520497 PPP1R15AO75807 674 aaPredicted RBP12.29□□□□□ -0.44
VAPB-206ENST00000520497 L3MBTL2Q969R5 705 aa12.29□□□□□ -0.44
VAPB-206ENST00000520497 ZMYM3Q14202 1370 aa12.29□□□□□ -0.44
VAPB-206ENST00000520497 SETD1BQ9UPS6 1966 aaKnown RBP12.29□□□□□ -0.44
VAPB-206ENST00000520497 TRPM1Q7Z4N2 1603 aa12.28□□□□□ -0.44
VAPB-206ENST00000520497 UHRF1BP1Q6BDS2 1440 aa12.28□□□□□ -0.44
VAPB-206ENST00000520497 UBR1Q8IWV7 1749 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms