RNA–Protein interactions for RNA: ENST00000518743.1

HMGB1P23-201, Transcript of high mobility group box 1 pseudogene 23, humanhuman

BASIC

Gene HMGB1P23, Length 568 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P23-201ENST00000518743 PDCD7Q8N8D1 485 aaKnown RBP8.6□□□□□ -1.03
HMGB1P23-201ENST00000518743 DDRGK1Q96HY6 314 aa8.6□□□□□ -1.03
HMGB1P23-201ENST00000518743 IL27Q8NEV9 243 aa8.59□□□□□ -1.03
HMGB1P23-201ENST00000518743 EMILIN3Q9NT22 766 aa8.59□□□□□ -1.03
HMGB1P23-201ENST00000518743 FANCD2Q9BXW9 1451 aa8.58□□□□□ -1.04
HMGB1P23-201ENST00000518743 MAP3K9P80192 1104 aa8.58□□□□□ -1.04
HMGB1P23-201ENST00000518743 MAP2K5Q13163 448 aa8.58□□□□□ -1.04
HMGB1P23-201ENST00000518743 DPY19L2Q6NUT2 758 aa8.58□□□□□ -1.04
HMGB1P23-201ENST00000518743 MAMSTRQ6ZN01 415 aa8.58□□□□□ -1.04
HMGB1P23-201ENST00000518743 GPBP1L1Q9HC44 474 aaPredicted RBP8.58□□□□□ -1.04
HMGB1P23-201ENST00000518743 ZNF316A6NFI3 1004 aaPredicted RBP8.57□□□□□ -1.04
HMGB1P23-201ENST00000518743 SCUBE2Q9NQ36 999 aa8.57□□□□□ -1.04
HMGB1P23-201ENST00000518743 SPATA31D1Q6ZQQ2 1576 aa8.56□□□□□ -1.04
HMGB1P23-201ENST00000518743 PLPP6Q8IY26 295 aa8.56□□□□□ -1.04
HMGB1P23-201ENST00000518743 ZMYND15Q9H091 742 aa8.56□□□□□ -1.04
HMGB1P23-201ENST00000518743 KIF13AQ9H1H9 1805 aa8.55□□□□□ -1.04
HMGB1P23-201ENST00000518743 RSPH6AQ9H0K4 717 aa8.55□□□□□ -1.04
HMGB1P23-201ENST00000518743 BOLA1Q9Y3E2 137 aa8.55□□□□□ -1.04
HMGB1P23-201ENST00000518743 ADGRL1O94910 1474 aa8.55□□□□□ -1.04
HMGB1P23-201ENST00000518743 EIF4G3O43432 1585 aaKnown RBP8.54□□□□□ -1.04
HMGB1P23-201ENST00000518743 NUTM2FA1L443 756 aa8.54□□□□□ -1.04
HMGB1P23-201ENST00000518743 SUPT5HO00267 1087 aaKnown RBP8.54□□□□□ -1.04
HMGB1P23-201ENST00000518743 TBC1D12O60347 775 aa8.54□□□□□ -1.04
HMGB1P23-201ENST00000518743 HIC1Q14526 733 aa8.54□□□□□ -1.04
HMGB1P23-201ENST00000518743 TMEM121BQ9BXQ6 578 aaPredicted RBP8.54□□□□□ -1.04
HMGB1P23-201ENST00000518743 KDM6BO15054 1643 aa8.54□□□□□ -1.04
HMGB1P23-201ENST00000518743 URB2Q14146 1524 aaKnown RBP8.54□□□□□ -1.04
HMGB1P23-201ENST00000518743 GNPATO15228 680 aa8.53□□□□□ -1.04
HMGB1P23-201ENST00000518743 FCHSD2O94868 740 aa8.53□□□□□ -1.04
HMGB1P23-201ENST00000518743 AMHR2Q16671 573 aa8.53□□□□□ -1.04
HMGB1P23-201ENST00000518743 L3MBTL3Q96JM7 780 aaPredicted RBP8.53□□□□□ -1.04
HMGB1P23-201ENST00000518743 IFT140Q96RY7 1462 aa8.52□□□□□ -1.05
HMGB1P23-201ENST00000518743 GRXCR2A6NFK2 248 aa8.52□□□□□ -1.05
HMGB1P23-201ENST00000518743 IRF6O14896 467 aa8.52□□□□□ -1.05
HMGB1P23-201ENST00000518743 PTGER2P43116 358 aa8.52□□□□□ -1.05
HMGB1P23-201ENST00000518743 FLIIQ13045 1269 aa8.52□□□□□ -1.05
HMGB1P23-201ENST00000518743 GPR37O15354 613 aa8.51□□□□□ -1.05
HMGB1P23-201ENST00000518743 GOPCQ9HD26 462 aa8.51□□□□□ -1.05
HMGB1P23-201ENST00000518743 GAPVD1Q14C86 1478 aa8.51□□□□□ -1.05
HMGB1P23-201ENST00000518743 KIF3CO14782 793 aa8.5□□□□□ -1.05
HMGB1P23-201ENST00000518743 SLAIN1Q8ND83 568 aa8.5□□□□□ -1.05
HMGB1P23-201ENST00000518743 CCDC102AQ96A19 550 aa8.5□□□□□ -1.05
HMGB1P23-201ENST00000518743 C2orf72A6NCS6 295 aa8.49□□□□□ -1.05
HMGB1P23-201ENST00000518743 CLASP1Q7Z460 1538 aa8.46□□□□□ -1.05
HMGB1P23-201ENST00000518743 OSBPP22059 807 aa8.46□□□□□ -1.06
HMGB1P23-201ENST00000518743 C3orf67Q6ZVT6 689 aa8.46□□□□□ -1.06
HMGB1P23-201ENST00000518743 OXER1Q8TDS5 423 aa8.46□□□□□ -1.06
HMGB1P23-201ENST00000518743 FAM117AQ9C073 453 aa8.46□□□□□ -1.06
HMGB1P23-201ENST00000518743 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.46□□□□□ -1.06
HMGB1P23-201ENST00000518743 SYNJ1O43426 1573 aa8.45□□□□□ -1.06
HMGB1P23-201ENST00000518743 FAM69CQ0P6D2 419 aa8.45□□□□□ -1.06
HMGB1P23-201ENST00000518743 TTLL12Q14166 644 aaPredicted RBP8.45□□□□□ -1.06
HMGB1P23-201ENST00000518743 PARP9Q8IXQ6 854 aa8.44□□□□□ -1.06
HMGB1P23-201ENST00000518743 FAM163AQ96GL9 167 aaPredicted RBP8.44□□□□□ -1.06
HMGB1P23-201ENST00000518743 TSPOAP1O95153 1857 aa8.43□□□□□ -1.06
HMGB1P23-201ENST00000518743 UPF1Q92900 1129 aaKnown RBP eCLIP8.42□□□□□ -1.06
HMGB1P23-201ENST00000518743 AQRO60306 1485 aaKnown RBP eCLIP8.42□□□□□ -1.06
HMGB1P23-201ENST00000518743 PEG3Q9GZU2 1588 aa8.41□□□□□ -1.06
HMGB1P23-201ENST00000518743 PCMTD1Q96MG8 357 aaPredicted RBP8.41□□□□□ -1.06
HMGB1P23-201ENST00000518743 EVI5O60447 810 aa8.4□□□□□ -1.06
HMGB1P23-201ENST00000518743 PTGDRQ13258 359 aa8.4□□□□□ -1.06
HMGB1P23-201ENST00000518743 DDX12PQ92771 950 aa8.4□□□□□ -1.06
HMGB1P23-201ENST00000518743 EPAS1Q99814 870 aa8.4□□□□□ -1.06
HMGB1P23-201ENST00000518743 PLEKHG3A1L390 1219 aa8.39□□□□□ -1.07
HMGB1P23-201ENST00000518743 CLCN1P35523 988 aa8.39□□□□□ -1.07
HMGB1P23-201ENST00000518743 CHMP7Q8WUX9 453 aaPredicted RBP8.39□□□□□ -1.07
HMGB1P23-201ENST00000518743 LCE2DQ5TA82 110 aaPredicted RBP8.38□□□□□ -1.07
HMGB1P23-201ENST00000518743 PTCD2Q8WV60 388 aaKnown RBP8.37□□□□□ -1.07
HMGB1P23-201ENST00000518743 GIGYF2Q6Y7W6 1299 aaKnown RBP8.36□□□□□ -1.07
HMGB1P23-201ENST00000518743 PHF14O94880 888 aa8.35□□□□□ -1.07
HMGB1P23-201ENST00000518743 SLC34A2O95436 690 aa8.35□□□□□ -1.07
HMGB1P23-201ENST00000518743 TMEM92Q6UXU6 159 aa8.35□□□□□ -1.07
HMGB1P23-201ENST00000518743 ANO8Q9HCE9 1232 aaPredicted RBP8.35□□□□□ -1.07
HMGB1P23-201ENST00000518743 A6NJR5 290 aa8.34□□□□□ -1.07
HMGB1P23-201ENST00000518743 SH3D19Q5HYK7 790 aa8.34□□□□□ -1.07
HMGB1P23-201ENST00000518743 CERKQ8TCT0 537 aa8.34□□□□□ -1.07
HMGB1P23-201ENST00000518743 GPCPD1Q9NPB8 672 aa8.34□□□□□ -1.07
HMGB1P23-201ENST00000518743 ABCC10Q5T3U5 1492 aa8.33□□□□□ -1.08
HMGB1P23-201ENST00000518743 EN1Q05925 392 aaPredicted RBP8.33□□□□□ -1.08
HMGB1P23-201ENST00000518743 SNAPC4Q5SXM2 1469 aa8.32□□□□□ -1.08
HMGB1P23-201ENST00000518743 POTEMA6NI47 508 aa8.32□□□□□ -1.08
HMGB1P23-201ENST00000518743 ST18O60284 1047 aa8.32□□□□□ -1.08
HMGB1P23-201ENST00000518743 FECHP22830 423 aa8.32□□□□□ -1.08
HMGB1P23-201ENST00000518743 FBXW7Q969H0 707 aa8.32□□□□□ -1.08
HMGB1P23-201ENST00000518743 CFTRP13569 1480 aa8.32□□□□□ -1.08
HMGB1P23-201ENST00000518743 MAP3K7O43318 606 aa8.31□□□□□ -1.08
HMGB1P23-201ENST00000518743 OATP04181 439 aa8.31□□□□□ -1.08
HMGB1P23-201ENST00000518743 POTEGQ6S5H5 508 aa8.31□□□□□ -1.08
HMGB1P23-201ENST00000518743 DIP2BQ9P265 1576 aa8.31□□□□□ -1.08
HMGB1P23-201ENST00000518743 TOP2BQ02880 1626 aa8.3□□□□□ -1.08
HMGB1P23-201ENST00000518743 UBTFP17480 764 aaKnown RBP8.3□□□□□ -1.08
HMGB1P23-201ENST00000518743 DIXDC1Q155Q3 683 aa8.3□□□□□ -1.08
HMGB1P23-201ENST00000518743 TOPBP1Q92547 1522 aa8.29□□□□□ -1.08
HMGB1P23-201ENST00000518743 SKIV2LQ15477 1246 aaKnown RBP8.29□□□□□ -1.08
HMGB1P23-201ENST00000518743 TYW1BQ6NUM6 668 aa8.29□□□□□ -1.08
HMGB1P23-201ENST00000518743 MROH2BQ7Z745 1585 aa8.29□□□□□ -1.08
HMGB1P23-201ENST00000518743 APBB1O00213 710 aa8.28□□□□□ -1.08
HMGB1P23-201ENST00000518743 SNPHO15079 494 aa8.28□□□□□ -1.08
HMGB1P23-201ENST00000518743 ONECUT3O60422 494 aaPredicted RBP8.28□□□□□ -1.08
HMGB1P23-201ENST00000518743 MS4A1P11836 297 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms