RNA–Protein interactions for RNA: ENST00000517354.5

CPNE3-201, Transcript of copine 3, humanhuman

TSL 4

Gene CPNE3, Length 566 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-201ENST00000517354 ZMYND10O75800 440 aa12.89□□□□□ -0.35
CPNE3-201ENST00000517354 PTPREP23469 700 aa12.89□□□□□ -0.35
CPNE3-201ENST00000517354 TSR1Q2NL82 804 aaKnown RBP12.89□□□□□ -0.35
CPNE3-201ENST00000517354 HIC1Q14526 733 aa12.88□□□□□ -0.35
CPNE3-201ENST00000517354 CERKQ8TCT0 537 aa12.88□□□□□ -0.35
CPNE3-201ENST00000517354 BARGINQ6ZT62 677 aa12.87□□□□□ -0.35
CPNE3-201ENST00000517354 GNPATO15228 680 aa12.86□□□□□ -0.35
CPNE3-201ENST00000517354 PTGDRQ13258 359 aa12.86□□□□□ -0.35
CPNE3-201ENST00000517354 BCL2L12Q9HB09 334 aa12.86□□□□□ -0.35
CPNE3-201ENST00000517354 CDHR5Q9HBB8 845 aa12.86□□□□□ -0.35
CPNE3-201ENST00000517354 SLC24A3Q9HC58 644 aa12.82□□□□□ -0.36
CPNE3-201ENST00000517354 KCNK17Q96T54 332 aa12.81□□□□□ -0.36
CPNE3-201ENST00000517354 NPDC1Q9NQX5 325 aaPredicted RBP12.81□□□□□ -0.36
CPNE3-201ENST00000517354 AK7Q96M32 723 aa12.79□□□□□ -0.36
CPNE3-201ENST00000517354 HS3ST6Q96QI5 342 aa12.79□□□□□ -0.36
CPNE3-201ENST00000517354 MINK1Q8N4C8 1332 aaPredicted RBP12.79□□□□□ -0.36
CPNE3-201ENST00000517354 ARHGAP33O14559 1287 aa12.78□□□□□ -0.36
CPNE3-201ENST00000517354 GPR37O15354 613 aa12.78□□□□□ -0.36
CPNE3-201ENST00000517354 ZNF687Q8N1G0 1237 aa12.78□□□□□ -0.36
CPNE3-201ENST00000517354 PPP1R3GB7ZBB8 358 aa12.76□□□□□ -0.37
CPNE3-201ENST00000517354 PBX2P40425 430 aa12.76□□□□□ -0.37
CPNE3-201ENST00000517354 PRSS12P56730 875 aa12.76□□□□□ -0.37
CPNE3-201ENST00000517354 MAP2K5Q13163 448 aa12.76□□□□□ -0.37
CPNE3-201ENST00000517354 COL9A1P20849 921 aa12.75□□□□□ -0.37
CPNE3-201ENST00000517354 CDCA7LQ96GN5 454 aa12.75□□□□□ -0.37
CPNE3-201ENST00000517354 IRF6O14896 467 aa12.74□□□□□ -0.37
CPNE3-201ENST00000517354 FECHP22830 423 aa12.74□□□□□ -0.37
CPNE3-201ENST00000517354 PSEN2P49810 448 aa12.74□□□□□ -0.37
CPNE3-201ENST00000517354 AXIN2Q9Y2T1 843 aa12.74□□□□□ -0.37
CPNE3-201ENST00000517354 PADI6Q6TGC4 694 aa12.73□□□□□ -0.37
CPNE3-201ENST00000517354 PACS2Q86VP3 889 aa12.72□□□□□ -0.37
CPNE3-201ENST00000517354 LCE2DQ5TA82 110 aaPredicted RBP12.71□□□□□ -0.37
CPNE3-201ENST00000517354 RBM27Q9P2N5 1060 aaKnown RBP12.71□□□□□ -0.37
CPNE3-201ENST00000517354 OATP04181 439 aa12.69□□□□□ -0.38
CPNE3-201ENST00000517354 CCDC102AQ96A19 550 aa12.68□□□□□ -0.38
CPNE3-201ENST00000517354 POTEB3A0JP26 581 aa12.67□□□□□ -0.38
CPNE3-201ENST00000517354 TRIM6-TRIM34B2RNG4 842 aa12.67□□□□□ -0.38
CPNE3-201ENST00000517354 POTEBQ6S5H4 581 aa12.67□□□□□ -0.38
CPNE3-201ENST00000517354 ONECUT3O60422 494 aaPredicted RBP12.66□□□□□ -0.38
CPNE3-201ENST00000517354 RBM46Q8TBY0 533 aaKnown RBP12.66□□□□□ -0.38
CPNE3-201ENST00000517354 TRIM66O15016 1216 aa12.65□□□□□ -0.38
CPNE3-201ENST00000517354 PROX2Q3B8N5 592 aa12.65□□□□□ -0.38
CPNE3-201ENST00000517354 ZBED2Q9BTP6 218 aa12.65□□□□□ -0.38
CPNE3-201ENST00000517354 NBPF26B4DH59 902 aa12.64□□□□□ -0.39
CPNE3-201ENST00000517354 FAM161AQ3B820 660 aa12.64□□□□□ -0.39
CPNE3-201ENST00000517354 DMRTA1Q5VZB9 504 aa12.64□□□□□ -0.39
CPNE3-201ENST00000517354 STAC3Q96MF2 364 aa12.64□□□□□ -0.39
CPNE3-201ENST00000517354 KIAA1468Q9P260 1216 aa12.64□□□□□ -0.39
CPNE3-201ENST00000517354 POTEEQ6S8J3 1075 aa12.63□□□□□ -0.39
CPNE3-201ENST00000517354 TTC13Q8NBP0 860 aa12.63□□□□□ -0.39
CPNE3-201ENST00000517354 TSKSQ9UJT2 592 aa12.63□□□□□ -0.39
CPNE3-201ENST00000517354 PNMA3Q9UL41 463 aa12.63□□□□□ -0.39
CPNE3-201ENST00000517354 NEUROD2Q15784 382 aa12.62□□□□□ -0.39
CPNE3-201ENST00000517354 ANKRD13DQ6ZTN6 518 aa12.62□□□□□ -0.39
CPNE3-201ENST00000517354 SLC4A5Q9BY07 1137 aa12.62□□□□□ -0.39
CPNE3-201ENST00000517354 ADGRG1Q9Y653 693 aa12.62□□□□□ -0.39
CPNE3-201ENST00000517354 NUDT18Q6ZVK8 323 aa12.61□□□□□ -0.39
CPNE3-201ENST00000517354 PDE4DQ08499 809 aa12.6□□□□□ -0.39
CPNE3-201ENST00000517354 TATDN2Q93075 761 aa12.6□□□□□ -0.39
CPNE3-201ENST00000517354 LSM11P83369 360 aaKnown RBP eCLIP12.59□□□□□ -0.39
CPNE3-201ENST00000517354 POTEGQ6S5H5 508 aa12.59□□□□□ -0.39
CPNE3-201ENST00000517354 FAM198AQ9UFP1 575 aa12.59□□□□□ -0.39
CPNE3-201ENST00000517354 RABGEF1Q9UJ41 708 aa12.59□□□□□ -0.39
CPNE3-201ENST00000517354 VPS9D1Q9Y2B5 631 aa12.58□□□□□ -0.4
CPNE3-201ENST00000517354 TK2O00142 265 aa12.57□□□□□ -0.4
CPNE3-201ENST00000517354 HDGFP51858 240 aaKnown RBP12.57□□□□□ -0.4
CPNE3-201ENST00000517354 TTLL12Q14166 644 aaPredicted RBP12.57□□□□□ -0.4
CPNE3-201ENST00000517354 METTL3Q86U44 580 aaKnown RBP12.57□□□□□ -0.4
CPNE3-201ENST00000517354 POTEMA6NI47 508 aa12.56□□□□□ -0.4
CPNE3-201ENST00000517354 SMAPO00193 183 aa12.56□□□□□ -0.4
CPNE3-201ENST00000517354 PXYLP1Q8TE99 480 aa12.56□□□□□ -0.4
CPNE3-201ENST00000517354 NBPF3Q9H094 633 aa12.56□□□□□ -0.4
CPNE3-201ENST00000517354 EYA1Q99502 592 aa12.54□□□□□ -0.4
CPNE3-201ENST00000517354 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.53□□□□□ -0.4
CPNE3-201ENST00000517354 CLCN1P35523 988 aa12.53□□□□□ -0.4
CPNE3-201ENST00000517354 BRPF1P55201 1214 aaPredicted RBP12.53□□□□□ -0.4
CPNE3-201ENST00000517354 MDM2Q00987 491 aaPredicted RBP12.53□□□□□ -0.4
CPNE3-201ENST00000517354 AMHR2Q16671 573 aa12.53□□□□□ -0.4
CPNE3-201ENST00000517354 ADGRD1Q6QNK2 874 aa12.53□□□□□ -0.4
CPNE3-201ENST00000517354 RCCD1A6NED2 376 aa12.52□□□□□ -0.41
CPNE3-201ENST00000517354 GOLGA8CPA6NN73 597 aa12.52□□□□□ -0.41
CPNE3-201ENST00000517354 MRPL50Q8N5N7 158 aaKnown RBP12.52□□□□□ -0.41
CPNE3-201ENST00000517354 SEPT9Q9UHD8 586 aaPredicted RBP12.52□□□□□ -0.41
CPNE3-201ENST00000517354 DNAJB2P25686 324 aa12.51□□□□□ -0.41
CPNE3-201ENST00000517354 CDAN1Q8IWY9 1227 aa12.51□□□□□ -0.41
CPNE3-201ENST00000517354 SLC4A3P48751 1232 aa12.5□□□□□ -0.41
CPNE3-201ENST00000517354 PHOX2BQ99453 314 aa12.5□□□□□ -0.41
CPNE3-201ENST00000517354 NLRP7Q8WX94 980 aa12.49□□□□□ -0.41
CPNE3-201ENST00000517354 GPBP1L1Q9HC44 474 aaPredicted RBP12.49□□□□□ -0.41
CPNE3-201ENST00000517354 GPCPD1Q9NPB8 672 aa12.49□□□□□ -0.41
CPNE3-201ENST00000517354 C3orf80F5H4A9 247 aa12.48□□□□□ -0.41
CPNE3-201ENST00000517354 FAM98CQ17RN3 349 aaKnown RBP12.48□□□□□ -0.41
CPNE3-201ENST00000517354 LAPTM4BQ86VI4 370 aa12.48□□□□□ -0.41
CPNE3-201ENST00000517354 KDM4CQ9H3R0 1056 aa12.47□□□□□ -0.41
CPNE3-201ENST00000517354 DAXXQ9UER7 740 aaPredicted RBP12.47□□□□□ -0.41
CPNE3-201ENST00000517354 PARP9Q8IXQ6 854 aa12.46□□□□□ -0.41
CPNE3-201ENST00000517354 RSPH4AQ5TD94 716 aa12.45□□□□□ -0.42
CPNE3-201ENST00000517354 GIGYF2Q6Y7W6 1299 aaKnown RBP12.45□□□□□ -0.42
CPNE3-201ENST00000517354 BHMG1C9JSJ3 638 aaPredicted RBP12.44□□□□□ -0.42
CPNE3-201ENST00000517354 SSTR3P32745 418 aaPredicted RBP12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms