RNA–Protein interactions for RNA: ENST00000515527.1

SMAD1-216, Transcript of SMAD family member 1, humanhuman

TSL 2

Gene SMAD1, Length 632 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD1-216ENST00000515527 FAM135AQ9P2D6 1515 aa22.66■■□□□ 1.22
SMAD1-216ENST00000515527 XIRP1Q702N8 1843 aaKnown RBP22.66■■□□□ 1.22
SMAD1-216ENST00000515527 PREX2Q70Z35 1606 aa22.65■■□□□ 1.22
SMAD1-216ENST00000515527 PLXNC1O60486 1568 aa22.64■■□□□ 1.22
SMAD1-216ENST00000515527 UGGT1Q9NYU2 1555 aa22.64■■□□□ 1.22
SMAD1-216ENST00000515527 RXRBP28702 533 aa22.64■■□□□ 1.21
SMAD1-216ENST00000515527 MEX3CQ5U5Q3 659 aaKnown RBP22.64■■□□□ 1.21
SMAD1-216ENST00000515527 A2MP01023 1474 aa22.64■■□□□ 1.21
SMAD1-216ENST00000515527 JCADQ9P266 1359 aa22.62■■□□□ 1.21
SMAD1-216ENST00000515527 ZRANB1Q9UGI0 708 aa22.6■■□□□ 1.21
SMAD1-216ENST00000515527 ATP7AQ04656 1500 aa22.58■■□□□ 1.21
SMAD1-216ENST00000515527 FOXD1Q16676 465 aa22.58■■□□□ 1.21
SMAD1-216ENST00000515527 PHLPP1O60346 1717 aa22.57■■□□□ 1.2
SMAD1-216ENST00000515527 ZNF777Q9ULD5 760 aaPredicted RBP22.56■■□□□ 1.2
SMAD1-216ENST00000515527 NLRP1Q9C000 1473 aa22.55■■□□□ 1.2
SMAD1-216ENST00000515527 CDK12Q9NYV4 1490 aaPredicted RBP22.54■■□□□ 1.2
SMAD1-216ENST00000515527 ZC3H13Q5T200 1668 aaKnown RBP22.54■■□□□ 1.2
SMAD1-216ENST00000515527 PZPP20742 1482 aa22.54■■□□□ 1.2
SMAD1-216ENST00000515527 SYCP2Q9BX26 1530 aa22.52■■□□□ 1.2
SMAD1-216ENST00000515527 SETBP1Q9Y6X0 1596 aa22.52■■□□□ 1.2
SMAD1-216ENST00000515527 MIA2Q96PC5 1412 aa22.52■■□□□ 1.2
SMAD1-216ENST00000515527 LRP6O75581 1613 aa22.52■■□□□ 1.2
SMAD1-216ENST00000515527 KDM5DQ9BY66 1539 aa22.52■■□□□ 1.19
SMAD1-216ENST00000515527 HNRNPMP52272 730 aaKnown RBP eCLIP22.5■■□□□ 1.19
SMAD1-216ENST00000515527 INO80Q9ULG1 1556 aaPredicted RBP22.49■■□□□ 1.19
SMAD1-216ENST00000515527 LRRC9Q6ZRR7 1453 aa22.48■■□□□ 1.19
SMAD1-216ENST00000515527 CSRNP3Q8WYN3 585 aa22.48■■□□□ 1.19
SMAD1-216ENST00000515527 RBM33Q96EV2 1170 aaKnown RBP22.48■■□□□ 1.19
SMAD1-216ENST00000515527 CDC42BPAQ5VT25 1732 aa22.48■■□□□ 1.19
SMAD1-216ENST00000515527 ADGBQ8N7X0 1667 aa22.47■■□□□ 1.19
SMAD1-216ENST00000515527 NUTM2BA6NNL0 878 aaPredicted RBP22.47■■□□□ 1.19
SMAD1-216ENST00000515527 NUTM2EB1AL46 878 aaPredicted RBP22.47■■□□□ 1.19
SMAD1-216ENST00000515527 NUTM2DQ5VT03 806 aaPredicted RBP22.47■■□□□ 1.19
SMAD1-216ENST00000515527 NUTM2AQ8IVF1 878 aaPredicted RBP22.47■■□□□ 1.19
SMAD1-216ENST00000515527 SPATA31A6Q5VVP1 1343 aa22.47■■□□□ 1.19
SMAD1-216ENST00000515527 TMEM94Q12767 1356 aa22.46■■□□□ 1.19
SMAD1-216ENST00000515527 FMN1Q68DA7 1419 aa22.44■■□□□ 1.18
SMAD1-216ENST00000515527 WASHC2CQ9Y4E1 1318 aa22.4■■□□□ 1.18
SMAD1-216ENST00000515527 SCAF11Q99590 1463 aaKnown RBP22.4■■□□□ 1.18
SMAD1-216ENST00000515527 RGS12O14924 1447 aa22.4■■□□□ 1.18
SMAD1-216ENST00000515527 COL16A1Q07092 1604 aaPredicted RBP22.39■■□□□ 1.18
SMAD1-216ENST00000515527 LRRIQ1Q96JM4 1722 aa22.38■■□□□ 1.17
SMAD1-216ENST00000515527 CHIC1Q5VXU3 224 aa22.37■■□□□ 1.17
SMAD1-216ENST00000515527 FGD6Q6ZV73 1430 aa22.37■■□□□ 1.17
SMAD1-216ENST00000515527 PROSER2Q86WR7 435 aaPredicted RBP22.36■■□□□ 1.17
SMAD1-216ENST00000515527 SLAIN2Q9P270 581 aa22.36■■□□□ 1.17
SMAD1-216ENST00000515527 KIF3BO15066 747 aa22.35■■□□□ 1.17
SMAD1-216ENST00000515527 MAP3K1Q13233 1512 aa22.35■■□□□ 1.17
SMAD1-216ENST00000515527 AFF2P51816 1311 aa22.34■■□□□ 1.17
SMAD1-216ENST00000515527 TXNDC2Q86VQ3 553 aa22.33■■□□□ 1.17
SMAD1-216ENST00000515527 ATAD2Q6PL18 1390 aa22.33■■□□□ 1.17
SMAD1-216ENST00000515527 LTKP29376 864 aa22.32■■□□□ 1.16
SMAD1-216ENST00000515527 MSH6P52701 1360 aa22.31■■□□□ 1.16
SMAD1-216ENST00000515527 KIAA1107Q9UPP5 1409 aa22.31■■□□□ 1.16
SMAD1-216ENST00000515527 SHPRHQ149N8 1683 aa22.3■■□□□ 1.16
SMAD1-216ENST00000515527 RBM6P78332 1123 aaKnown RBP22.3■■□□□ 1.16
SMAD1-216ENST00000515527 PLEKHH2Q8IVE3 1493 aa22.29■■□□□ 1.16
SMAD1-216ENST00000515527 DHX29Q7Z478 1369 aaKnown RBP22.29■■□□□ 1.16
SMAD1-216ENST00000515527 UBR1Q8IWV7 1749 aa22.28■■□□□ 1.16
SMAD1-216ENST00000515527 KCNA6P17658 529 aa22.27■■□□□ 1.16
SMAD1-216ENST00000515527 QTRT2Q9H974 415 aaKnown RBP22.27■■□□□ 1.16
SMAD1-216ENST00000515527 EID1Q9Y6B2 187 aa22.26■■□□□ 1.15
SMAD1-216ENST00000515527 TIAM1Q13009 1591 aa22.25■■□□□ 1.15
SMAD1-216ENST00000515527 IFFO2Q5TF58 517 aa22.24■■□□□ 1.15
SMAD1-216ENST00000515527 PRDM15P57071 1507 aaPredicted RBP22.23■■□□□ 1.15
SMAD1-216ENST00000515527 GPATCH8Q9UKJ3 1502 aaKnown RBP22.23■■□□□ 1.15
SMAD1-216ENST00000515527 CFDP1Q9UEE9 299 aaPredicted RBP22.22■■□□□ 1.15
SMAD1-216ENST00000515527 ARHGAP23Q9P227 1491 aa22.21■■□□□ 1.15
SMAD1-216ENST00000515527 SLIT1O75093 1534 aa22.21■■□□□ 1.15
SMAD1-216ENST00000515527 NCOA2Q15596 1464 aa22.2■■□□□ 1.14
SMAD1-216ENST00000515527 LRP5O75197 1615 aa22.2■■□□□ 1.14
SMAD1-216ENST00000515527 NGLY1Q96IV0 654 aa22.19■■□□□ 1.14
SMAD1-216ENST00000515527 CFAP65Q6ZU64 1925 aaKnown RBP22.19■■□□□ 1.14
SMAD1-216ENST00000515527 ERVK-7P63135 1459 aa22.17■■□□□ 1.14
SMAD1-216ENST00000515527 CCDC18Q5T9S5 1454 aa22.17■■□□□ 1.14
SMAD1-216ENST00000515527 EP400Q96L91 3159 aa22.17■■□□□ 1.14
SMAD1-216ENST00000515527 C8orf37Q96NL8 207 aa22.17■■□□□ 1.14
SMAD1-216ENST00000515527 ARHGAP35Q9NRY4 1499 aa22.16■■□□□ 1.14
SMAD1-216ENST00000515527 RTEL1-TNFRSF6BF6WH68 1400 aa22.16■■□□□ 1.14
SMAD1-216ENST00000515527 ABCC3O15438 1527 aa22.16■■□□□ 1.14
SMAD1-216ENST00000515527 NKTRP30414 1462 aaKnown RBP22.15■■□□□ 1.14
SMAD1-216ENST00000515527 AHDC1Q5TGY3 1603 aaPredicted RBP22.15■■□□□ 1.14
SMAD1-216ENST00000515527 CCDC125Q86Z20 511 aa22.14■■□□□ 1.13
SMAD1-216ENST00000515527 SLC26A8Q96RN1 970 aa22.14■■□□□ 1.13
SMAD1-216ENST00000515527 KDM5AP29375 1690 aaKnown RBP22.13■■□□□ 1.13
SMAD1-216ENST00000515527 YY1P25490 414 aa22.1■■□□□ 1.13
SMAD1-216ENST00000515527 CCNB3Q8WWL7 1395 aa22.09■■□□□ 1.13
SMAD1-216ENST00000515527 NWD1Q149M9 1564 aa22.08■■□□□ 1.13
SMAD1-216ENST00000515527 DIP2AQ14689 1571 aa22.08■■□□□ 1.12
SMAD1-216ENST00000515527 ZNF644Q9H582 1327 aaPredicted RBP22.06■■□□□ 1.12
SMAD1-216ENST00000515527 TMEM2Q9UHN6 1383 aa22.05■■□□□ 1.12
SMAD1-216ENST00000515527 C14orf37Q86TY3 774 aa22.05■■□□□ 1.12
SMAD1-216ENST00000515527 EEA1Q15075 1411 aa22.05■■□□□ 1.12
SMAD1-216ENST00000515527 STAG3Q9UJ98 1225 aa22.04■■□□□ 1.12
SMAD1-216ENST00000515527 MBD5Q9P267 1494 aa22.03■■□□□ 1.12
SMAD1-216ENST00000515527 EHMT2Q96KQ7 1210 aa22.03■■□□□ 1.12
SMAD1-216ENST00000515527 TET3O43151 1660 aa22.02■■□□□ 1.12
SMAD1-216ENST00000515527 UBTFP17480 764 aaKnown RBP22.02■■□□□ 1.12
SMAD1-216ENST00000515527 BCANQ96GW7 911 aa22.01■■□□□ 1.11
SMAD1-216ENST00000515527 CASKIN1Q8WXD9 1431 aa22■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms