RNA–Protein interactions for RNA: ENST00000515418.1

CPNE4-213, Transcript of copine 4, humanhuman

TSL 5

Gene CPNE4, Length 1,958 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-213ENST00000515418 KDM5CP41229 1560 aa13.18□□□□□ -0.3
CPNE4-213ENST00000515418 L3MBTL2Q969R5 705 aa13.18□□□□□ -0.3
CPNE4-213ENST00000515418 UNC13BO14795 1591 aa13.17□□□□□ -0.3
CPNE4-213ENST00000515418 MLH3Q9UHC1 1453 aa13.17□□□□□ -0.3
CPNE4-213ENST00000515418 DNAJC5Q9H3Z4 198 aa13.16□□□□□ -0.3
CPNE4-213ENST00000515418 RICTORQ6R327 1708 aa13.16□□□□□ -0.3
CPNE4-213ENST00000515418 HECW2Q9P2P5 1572 aa13.15□□□□□ -0.3
CPNE4-213ENST00000515418 RPRD2Q5VT52 1461 aaKnown RBP13.15□□□□□ -0.3
CPNE4-213ENST00000515418 A2MP01023 1474 aa13.14□□□□□ -0.31
CPNE4-213ENST00000515418 GGT6Q6P531 493 aa13.14□□□□□ -0.31
CPNE4-213ENST00000515418 IQGAP3Q86VI3 1631 aa13.13□□□□□ -0.31
CPNE4-213ENST00000515418 MAGI2Q86UL8 1455 aa13.13□□□□□ -0.31
CPNE4-213ENST00000515418 TEX14Q8IWB6 1497 aa13.13□□□□□ -0.31
CPNE4-213ENST00000515418 YEATS2Q9ULM3 1422 aa13.13□□□□□ -0.31
CPNE4-213ENST00000515418 ABCA6Q8N139 1617 aa13.13□□□□□ -0.31
CPNE4-213ENST00000515418 TRHP20396 242 aaPredicted RBP13.12□□□□□ -0.31
CPNE4-213ENST00000515418 FRMPD1Q5SYB0 1578 aa13.12□□□□□ -0.31
CPNE4-213ENST00000515418 COL17A1Q9UMD9 1497 aaPredicted RBP13.11□□□□□ -0.31
CPNE4-213ENST00000515418 PLA2R1Q13018 1463 aa13.11□□□□□ -0.31
CPNE4-213ENST00000515418 HIRIP3Q9BW71 556 aaPredicted RBP13.11□□□□□ -0.31
CPNE4-213ENST00000515418 DEPDC5O75140 1603 aa13.1□□□□□ -0.31
CPNE4-213ENST00000515418 KANK1Q14678 1352 aa13.1□□□□□ -0.31
CPNE4-213ENST00000515418 DIP2CQ9Y2E4 1556 aa13.09□□□□□ -0.31
CPNE4-213ENST00000515418 NBPF8Q3BBV2 869 aa13.09□□□□□ -0.31
CPNE4-213ENST00000515418 MROH1Q8NDA8 1641 aa13.08□□□□□ -0.31
CPNE4-213ENST00000515418 EIF2AK4Q9P2K8 1649 aaKnown RBP13.08□□□□□ -0.31
CPNE4-213ENST00000515418 RGL3Q3MIN7 710 aa13.08□□□□□ -0.32
CPNE4-213ENST00000515418 DIEXFQ68CQ4 756 aaKnown RBP13.07□□□□□ -0.32
CPNE4-213ENST00000515418 KDM2AQ9Y2K7 1162 aa13.07□□□□□ -0.32
CPNE4-213ENST00000515418 CFAP65Q6ZU64 1925 aaKnown RBP13.07□□□□□ -0.32
CPNE4-213ENST00000515418 E9PCH4 1651 aa13.07□□□□□ -0.32
CPNE4-213ENST00000515418 ZNF326Q5BKZ1 582 aaKnown RBP13.07□□□□□ -0.32
CPNE4-213ENST00000515418 CCDC144AA2RUR9 1427 aa13.06□□□□□ -0.32
CPNE4-213ENST00000515418 VWDEQ8N2E2 1590 aa13.05□□□□□ -0.32
CPNE4-213ENST00000515418 WASHC2CQ9Y4E1 1318 aa13.05□□□□□ -0.32
CPNE4-213ENST00000515418 DCAF11Q8TEB1 546 aa13.05□□□□□ -0.32
CPNE4-213ENST00000515418 PRDM15P57071 1507 aaPredicted RBP13.05□□□□□ -0.32
CPNE4-213ENST00000515418 ZMYM4Q5VZL5 1548 aa13.04□□□□□ -0.32
CPNE4-213ENST00000515418 TET3O43151 1660 aa13.03□□□□□ -0.32
CPNE4-213ENST00000515418 CEP152O94986 1710 aa13.03□□□□□ -0.32
CPNE4-213ENST00000515418 RNF17Q9BXT8 1623 aaKnown RBP13.03□□□□□ -0.32
CPNE4-213ENST00000515418 ATP10AO60312 1499 aa13.02□□□□□ -0.32
CPNE4-213ENST00000515418 MLECQ14165 292 aa13□□□□□ -0.33
CPNE4-213ENST00000515418 BCORL1Q5H9F3 1711 aa13□□□□□ -0.33
CPNE4-213ENST00000515418 PTPRTO14522 1441 aa13□□□□□ -0.33
CPNE4-213ENST00000515418 SPHKAPQ2M3C7 1700 aa12.99□□□□□ -0.33
CPNE4-213ENST00000515418 SIGLEC1Q9BZZ2 1709 aa12.98□□□□□ -0.33
CPNE4-213ENST00000515418 EFCAB6Q5THR3 1501 aa12.98□□□□□ -0.33
CPNE4-213ENST00000515418 HSPA5P11021 654 aaKnown RBP12.98□□□□□ -0.33
CPNE4-213ENST00000515418 ABCC3O15438 1527 aa12.98□□□□□ -0.33
CPNE4-213ENST00000515418 LMTK2Q8IWU2 1503 aa12.98□□□□□ -0.33
CPNE4-213ENST00000515418 NPATQ14207 1427 aa12.97□□□□□ -0.33
CPNE4-213ENST00000515418 UGGT1Q9NYU2 1555 aa12.97□□□□□ -0.33
CPNE4-213ENST00000515418 TRPM2O94759 1503 aa12.96□□□□□ -0.33
CPNE4-213ENST00000515418 CLTCL1P53675 1640 aa12.96□□□□□ -0.33
CPNE4-213ENST00000515418 EIF4G2P78344 907 aaKnown RBP eCLIP12.95□□□□□ -0.34
CPNE4-213ENST00000515418 SPATA31E1Q6ZUB1 1445 aa12.94□□□□□ -0.34
CPNE4-213ENST00000515418 ARID4BQ4LE39 1312 aaPredicted RBP12.94□□□□□ -0.34
CPNE4-213ENST00000515418 CHGAP10645 457 aaKnown RBP12.94□□□□□ -0.34
CPNE4-213ENST00000515418 UHRF1BP1Q6BDS2 1440 aa12.93□□□□□ -0.34
CPNE4-213ENST00000515418 CAMSAP1Q5T5Y3 1602 aa12.93□□□□□ -0.34
CPNE4-213ENST00000515418 DDX10Q13206 875 aaKnown RBP12.93□□□□□ -0.34
CPNE4-213ENST00000515418 FBXO31Q5XUX0 539 aaPredicted RBP12.93□□□□□ -0.34
CPNE4-213ENST00000515418 NBPF1Q3BBV0 1214 aa12.92□□□□□ -0.34
CPNE4-213ENST00000515418 ARHGEF40Q8TER5 1519 aa12.92□□□□□ -0.34
CPNE4-213ENST00000515418 REREQ9P2R6 1566 aa12.91□□□□□ -0.34
CPNE4-213ENST00000515418 MIER1Q8N108 512 aa12.91□□□□□ -0.34
CPNE4-213ENST00000515418 AGLP35573 1532 aa12.91□□□□□ -0.34
CPNE4-213ENST00000515418 CARD11Q9BXL7 1154 aa12.9□□□□□ -0.34
CPNE4-213ENST00000515418 PRAG1Q86YV5 1406 aa12.9□□□□□ -0.34
CPNE4-213ENST00000515418 C11orf95C9JLR9 678 aaPredicted RBP12.9□□□□□ -0.34
CPNE4-213ENST00000515418 KIF1BO60333 1816 aa12.89□□□□□ -0.35
CPNE4-213ENST00000515418 IDI1Q13907 227 aa12.89□□□□□ -0.35
CPNE4-213ENST00000515418 NOS1P29475 1434 aa12.88□□□□□ -0.35
CPNE4-213ENST00000515418 ARHGAP31Q2M1Z3 1444 aa12.88□□□□□ -0.35
CPNE4-213ENST00000515418 PPP6R1Q9UPN7 881 aa12.88□□□□□ -0.35
CPNE4-213ENST00000515418 CNTLNQ9NXG0 1405 aa12.88□□□□□ -0.35
CPNE4-213ENST00000515418 CLTCQ00610 1675 aaKnown RBP12.87□□□□□ -0.35
CPNE4-213ENST00000515418 ZC3H13Q5T200 1668 aaKnown RBP12.87□□□□□ -0.35
CPNE4-213ENST00000515418 RALGAPBQ86X10 1494 aa12.87□□□□□ -0.35
CPNE4-213ENST00000515418 ROCK2O75116 1388 aaKnown RBP12.87□□□□□ -0.35
CPNE4-213ENST00000515418 ESF1Q9H501 851 aaKnown RBP12.87□□□□□ -0.35
CPNE4-213ENST00000515418 USP47Q96K76 1375 aa12.86□□□□□ -0.35
CPNE4-213ENST00000515418 SYNMO15061 1565 aa12.86□□□□□ -0.35
CPNE4-213ENST00000515418 NUTM2DQ5VT03 806 aaPredicted RBP12.86□□□□□ -0.35
CPNE4-213ENST00000515418 WASHC2AQ641Q2 1341 aa12.86□□□□□ -0.35
CPNE4-213ENST00000515418 ADGRF5Q8IZF2 1346 aa12.86□□□□□ -0.35
CPNE4-213ENST00000515418 MROH2AA6NES4 1674 aa12.86□□□□□ -0.35
CPNE4-213ENST00000515418 ST20-MTHFSA0A0A6YYL1 179 aa12.85□□□□□ -0.35
CPNE4-213ENST00000515418 TRPM1Q7Z4N2 1603 aa12.85□□□□□ -0.35
CPNE4-213ENST00000515418 PREX1Q8TCU6 1659 aa12.84□□□□□ -0.35
CPNE4-213ENST00000515418 SENP3Q9H4L4 574 aaPredicted RBP12.84□□□□□ -0.35
CPNE4-213ENST00000515418 ZMYM3Q14202 1370 aa12.83□□□□□ -0.35
CPNE4-213ENST00000515418 SLC52A1Q9NWF4 448 aa12.83□□□□□ -0.36
CPNE4-213ENST00000515418 CFAP70Q5T0N1 1121 aa12.82□□□□□ -0.36
CPNE4-213ENST00000515418 PIK3C2BO00750 1634 aa12.82□□□□□ -0.36
CPNE4-213ENST00000515418 PLPPR3Q6T4P5 718 aa12.81□□□□□ -0.36
CPNE4-213ENST00000515418 STAC3Q96MF2 364 aa12.81□□□□□ -0.36
CPNE4-213ENST00000515418 MADDQ8WXG6 1647 aa12.81□□□□□ -0.36
CPNE4-213ENST00000515418 CEBPAP49715 358 aaPredicted RBP12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms