RNA–Protein interactions for RNA: ENST00000514439.1

CPNE4-211, Transcript of copine 4, humanhuman

TSL 1 (best)

Gene CPNE4, Length 2,312 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-211ENST00000514439 KDM5CP41229 1560 aa11.4□□□□□ -0.59
CPNE4-211ENST00000514439 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.4□□□□□ -0.59
CPNE4-211ENST00000514439 MAGI2Q86UL8 1455 aa11.39□□□□□ -0.59
CPNE4-211ENST00000514439 CCDC144AA2RUR9 1427 aa11.39□□□□□ -0.59
CPNE4-211ENST00000514439 PLA2R1Q13018 1463 aa11.38□□□□□ -0.59
CPNE4-211ENST00000514439 SUPT16HQ9Y5B9 1047 aaKnown RBP11.38□□□□□ -0.59
CPNE4-211ENST00000514439 DCAF11Q8TEB1 546 aa11.37□□□□□ -0.59
CPNE4-211ENST00000514439 KDM2AQ9Y2K7 1162 aa11.37□□□□□ -0.59
CPNE4-211ENST00000514439 BCORL1Q5H9F3 1711 aa11.37□□□□□ -0.59
CPNE4-211ENST00000514439 CARD11Q9BXL7 1154 aa11.36□□□□□ -0.59
CPNE4-211ENST00000514439 PRKRIP1Q9H875 184 aaPredicted RBP11.36□□□□□ -0.59
CPNE4-211ENST00000514439 SPAG9O60271 1321 aaKnown RBP11.36□□□□□ -0.59
CPNE4-211ENST00000514439 RTEL1-TNFRSF6BF6WH68 1400 aa11.35□□□□□ -0.59
CPNE4-211ENST00000514439 ZFYVE16Q7Z3T8 1539 aa11.35□□□□□ -0.59
CPNE4-211ENST00000514439 FANCAO15360 1455 aa11.35□□□□□ -0.59
CPNE4-211ENST00000514439 ABCA9Q8IUA7 1624 aa11.35□□□□□ -0.59
CPNE4-211ENST00000514439 AFAP1Q8N556 730 aa11.35□□□□□ -0.59
CPNE4-211ENST00000514439 PELP1Q8IZL8 1130 aaKnown RBP11.34□□□□□ -0.59
CPNE4-211ENST00000514439 ASXL2Q76L83 1435 aa11.33□□□□□ -0.6
CPNE4-211ENST00000514439 PRAG1Q86YV5 1406 aa11.33□□□□□ -0.6
CPNE4-211ENST00000514439 ATP10AO60312 1499 aa11.33□□□□□ -0.6
CPNE4-211ENST00000514439 ARID4BQ4LE39 1312 aaPredicted RBP11.33□□□□□ -0.6
CPNE4-211ENST00000514439 A2MP01023 1474 aa11.32□□□□□ -0.6
CPNE4-211ENST00000514439 ROCK2O75116 1388 aaKnown RBP11.32□□□□□ -0.6
CPNE4-211ENST00000514439 CCDC184Q52MB2 194 aa11.32□□□□□ -0.6
CPNE4-211ENST00000514439 RGL3Q3MIN7 710 aa11.32□□□□□ -0.6
CPNE4-211ENST00000514439 DHX29Q7Z478 1369 aaKnown RBP11.31□□□□□ -0.6
CPNE4-211ENST00000514439 OSCARQ8IYS5 282 aa11.31□□□□□ -0.6
CPNE4-211ENST00000514439 POLR3GLQ9BT43 218 aa11.31□□□□□ -0.6
CPNE4-211ENST00000514439 HNRNPUQ00839 825 aaKnown RBP eCLIP11.31□□□□□ -0.6
CPNE4-211ENST00000514439 TRPM1Q7Z4N2 1603 aa11.31□□□□□ -0.6
CPNE4-211ENST00000514439 INO80Q9ULG1 1556 aaPredicted RBP11.31□□□□□ -0.6
CPNE4-211ENST00000514439 ATP7AQ04656 1500 aa11.31□□□□□ -0.6
CPNE4-211ENST00000514439 ADGRL1O94910 1474 aa11.31□□□□□ -0.6
CPNE4-211ENST00000514439 ST20-MTHFSA0A0A6YYL1 179 aa11.3□□□□□ -0.6
CPNE4-211ENST00000514439 SCAPERQ9BY12 1400 aa11.3□□□□□ -0.6
CPNE4-211ENST00000514439 MRS2Q9HD23 443 aa11.29□□□□□ -0.6
CPNE4-211ENST00000514439 DEPDC5O75140 1603 aa11.28□□□□□ -0.6
CPNE4-211ENST00000514439 GPRASP1Q5JY77 1395 aa11.28□□□□□ -0.6
CPNE4-211ENST00000514439 E9PCH4 1651 aa11.27□□□□□ -0.6
CPNE4-211ENST00000514439 NBPF1Q3BBV0 1214 aa11.26□□□□□ -0.61
CPNE4-211ENST00000514439 EIF2AK4Q9P2K8 1649 aaKnown RBP11.26□□□□□ -0.61
CPNE4-211ENST00000514439 NPM1P06748 294 aaKnown RBP eCLIP11.26□□□□□ -0.61
CPNE4-211ENST00000514439 TRPM2O94759 1503 aa11.26□□□□□ -0.61
CPNE4-211ENST00000514439 FKBP8Q14318 412 aa11.25□□□□□ -0.61
CPNE4-211ENST00000514439 FAM9BQ8IZU0 186 aa11.25□□□□□ -0.61
CPNE4-211ENST00000514439 LAMC1P11047 1609 aa11.25□□□□□ -0.61
CPNE4-211ENST00000514439 VWDEQ8N2E2 1590 aa11.25□□□□□ -0.61
CPNE4-211ENST00000514439 MYT1LQ9UL68 1186 aa11.25□□□□□ -0.61
CPNE4-211ENST00000514439 PRDM15P57071 1507 aaPredicted RBP11.25□□□□□ -0.61
CPNE4-211ENST00000514439 PTPRTO14522 1441 aa11.25□□□□□ -0.61
CPNE4-211ENST00000514439 KANK1Q14678 1352 aa11.24□□□□□ -0.61
CPNE4-211ENST00000514439 TET3O43151 1660 aa11.24□□□□□ -0.61
CPNE4-211ENST00000514439 KIF3BO15066 747 aa11.24□□□□□ -0.61
CPNE4-211ENST00000514439 NEFLP07196 543 aa11.24□□□□□ -0.61
CPNE4-211ENST00000514439 CNGB1Q14028 1251 aaPredicted RBP11.23□□□□□ -0.61
CPNE4-211ENST00000514439 ZNF518AQ6AHZ1 1483 aa11.23□□□□□ -0.61
CPNE4-211ENST00000514439 SPHKAPQ2M3C7 1700 aa11.23□□□□□ -0.61
CPNE4-211ENST00000514439 MROH1Q8NDA8 1641 aa11.23□□□□□ -0.61
CPNE4-211ENST00000514439 CLTCL1P53675 1640 aa11.22□□□□□ -0.61
CPNE4-211ENST00000514439 KIDINS220Q9ULH0 1771 aa11.22□□□□□ -0.61
CPNE4-211ENST00000514439 CD109Q6YHK3 1445 aa11.22□□□□□ -0.61
CPNE4-211ENST00000514439 BCANQ96GW7 911 aa11.21□□□□□ -0.61
CPNE4-211ENST00000514439 RNF17Q9BXT8 1623 aaKnown RBP11.21□□□□□ -0.61
CPNE4-211ENST00000514439 COL17A1Q9UMD9 1497 aaPredicted RBP11.21□□□□□ -0.61
CPNE4-211ENST00000514439 CEP152O94986 1710 aa11.2□□□□□ -0.62
CPNE4-211ENST00000514439 CFAP74Q9C0B2 1584 aa11.2□□□□□ -0.62
CPNE4-211ENST00000514439 MADDQ8WXG6 1647 aa11.2□□□□□ -0.62
CPNE4-211ENST00000514439 TESK2Q96S53 571 aa11.2□□□□□ -0.62
CPNE4-211ENST00000514439 ZBED9Q6R2W3 1325 aa11.2□□□□□ -0.62
CPNE4-211ENST00000514439 POGZQ7Z3K3 1410 aa11.2□□□□□ -0.62
CPNE4-211ENST00000514439 DISP3Q9P2K9 1392 aa11.19□□□□□ -0.62
CPNE4-211ENST00000514439 POTEDQ86YR6 584 aa11.18□□□□□ -0.62
CPNE4-211ENST00000514439 EFCAB6Q5THR3 1501 aa11.18□□□□□ -0.62
CPNE4-211ENST00000514439 KTN1Q86UP2 1357 aaKnown RBP11.17□□□□□ -0.62
CPNE4-211ENST00000514439 STAC3Q96MF2 364 aa11.17□□□□□ -0.62
CPNE4-211ENST00000514439 MLH3Q9UHC1 1453 aa11.16□□□□□ -0.62
CPNE4-211ENST00000514439 RALBP1Q15311 655 aa11.16□□□□□ -0.62
CPNE4-211ENST00000514439 LMTK2Q8IWU2 1503 aa11.16□□□□□ -0.62
CPNE4-211ENST00000514439 FRMPD1Q5SYB0 1578 aa11.16□□□□□ -0.62
CPNE4-211ENST00000514439 NEURL4Q96JN8 1562 aa11.16□□□□□ -0.62
CPNE4-211ENST00000514439 UGGT1Q9NYU2 1555 aa11.16□□□□□ -0.62
CPNE4-211ENST00000514439 MYBBP1AQ9BQG0 1328 aaKnown RBP11.16□□□□□ -0.62
CPNE4-211ENST00000514439 PPRC1Q5VV67 1664 aaKnown RBP11.15□□□□□ -0.62
CPNE4-211ENST00000514439 HECW2Q9P2P5 1572 aa11.15□□□□□ -0.62
CPNE4-211ENST00000514439 TMF1P82094 1093 aa11.15□□□□□ -0.62
CPNE4-211ENST00000514439 TMC1Q8TDI8 760 aa11.15□□□□□ -0.62
CPNE4-211ENST00000514439 IQGAP1P46940 1657 aa11.15□□□□□ -0.63
CPNE4-211ENST00000514439 PNISRQ8TF01 805 aaKnown RBP11.14□□□□□ -0.63
CPNE4-211ENST00000514439 BRD4O60885 1362 aaPredicted RBP11.14□□□□□ -0.63
CPNE4-211ENST00000514439 PER1O15534 1290 aaPredicted RBP11.14□□□□□ -0.63
CPNE4-211ENST00000514439 NEO1Q92859 1461 aa11.14□□□□□ -0.63
CPNE4-211ENST00000514439 SCAF11Q99590 1463 aaKnown RBP11.14□□□□□ -0.63
CPNE4-211ENST00000514439 PARD3Q8TEW0 1356 aa11.13□□□□□ -0.63
CPNE4-211ENST00000514439 MYOM2P54296 1465 aa11.12□□□□□ -0.63
CPNE4-211ENST00000514439 ABCA6Q8N139 1617 aa11.12□□□□□ -0.63
CPNE4-211ENST00000514439 LRPPRCP42704 1394 aaKnown RBP11.11□□□□□ -0.63
CPNE4-211ENST00000514439 MAP3K4Q9Y6R4 1608 aa11.11□□□□□ -0.63
CPNE4-211ENST00000514439 RAPGEF3O95398 923 aa11.1□□□□□ -0.63
CPNE4-211ENST00000514439 IRX6P78412 446 aaPredicted RBP11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms