RNA–Protein interactions for RNA: ENST00000514271.2

CLIP1-205, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 3,493 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-205ENST00000514271 MBD5Q9P267 1494 aa10.73□□□□□ -0.69
CLIP1-205ENST00000514271 C9orf84Q5VXU9 1444 aa10.73□□□□□ -0.69
CLIP1-205ENST00000514271 ATP7AQ04656 1500 aa10.72□□□□□ -0.69
CLIP1-205ENST00000514271 ATP10AO60312 1499 aa10.71□□□□□ -0.69
CLIP1-205ENST00000514271 ADGRL2O95490 1459 aa10.71□□□□□ -0.69
CLIP1-205ENST00000514271 SETD5Q9C0A6 1442 aa10.71□□□□□ -0.7
CLIP1-205ENST00000514271 KIDINS220Q9ULH0 1771 aa10.71□□□□□ -0.7
CLIP1-205ENST00000514271 DIP2CQ9Y2E4 1556 aa10.7□□□□□ -0.7
CLIP1-205ENST00000514271 HFM1A2PYH4 1435 aa10.7□□□□□ -0.7
CLIP1-205ENST00000514271 PTPRKQ15262 1439 aa10.7□□□□□ -0.7
CLIP1-205ENST00000514271 COL17A1Q9UMD9 1497 aaPredicted RBP10.69□□□□□ -0.7
CLIP1-205ENST00000514271 ARHGEF12Q9NZN5 1544 aa10.68□□□□□ -0.7
CLIP1-205ENST00000514271 ABCA6Q8N139 1617 aa10.68□□□□□ -0.7
CLIP1-205ENST00000514271 ROCK1Q13464 1354 aa10.68□□□□□ -0.7
CLIP1-205ENST00000514271 DUOX2Q9NRD8 1548 aa10.68□□□□□ -0.7
CLIP1-205ENST00000514271 ZC3H13Q5T200 1668 aaKnown RBP10.67□□□□□ -0.7
CLIP1-205ENST00000514271 MROH2AA6NES4 1674 aa10.67□□□□□ -0.7
CLIP1-205ENST00000514271 DAPK1P53355 1430 aa10.66□□□□□ -0.7
CLIP1-205ENST00000514271 TRAPPC8Q9Y2L5 1435 aa10.66□□□□□ -0.7
CLIP1-205ENST00000514271 SPAG9O60271 1321 aaKnown RBP10.66□□□□□ -0.7
CLIP1-205ENST00000514271 RNF17Q9BXT8 1623 aaKnown RBP10.66□□□□□ -0.7
CLIP1-205ENST00000514271 CCER2I3L3R5 266 aa10.66□□□□□ -0.7
CLIP1-205ENST00000514271 SPATA31E1Q6ZUB1 1445 aa10.65□□□□□ -0.7
CLIP1-205ENST00000514271 ERBINQ96RT1 1412 aa10.65□□□□□ -0.7
CLIP1-205ENST00000514271 TSPY4P0CV99 314 aa10.65□□□□□ -0.7
CLIP1-205ENST00000514271 TSPY10P0CW01 314 aa10.65□□□□□ -0.7
CLIP1-205ENST00000514271 CNTLNQ9NXG0 1405 aa10.65□□□□□ -0.71
CLIP1-205ENST00000514271 A2MP01023 1474 aa10.64□□□□□ -0.71
CLIP1-205ENST00000514271 ADAMTSL3P82987 1691 aa10.64□□□□□ -0.71
CLIP1-205ENST00000514271 BCL11AQ9H165 835 aa10.63□□□□□ -0.71
CLIP1-205ENST00000514271 ANKRD30AQ9BXX3 1397 aa10.63□□□□□ -0.71
CLIP1-205ENST00000514271 FANCIQ9NVI1 1328 aa10.63□□□□□ -0.71
CLIP1-205ENST00000514271 ABCC5O15440 1437 aa10.63□□□□□ -0.71
CLIP1-205ENST00000514271 KDM5DQ9BY66 1539 aa10.62□□□□□ -0.71
CLIP1-205ENST00000514271 PLEKHG5O94827 1062 aa10.62□□□□□ -0.71
CLIP1-205ENST00000514271 DEPDC5O75140 1603 aa10.62□□□□□ -0.71
CLIP1-205ENST00000514271 DHX29Q7Z478 1369 aaKnown RBP10.61□□□□□ -0.71
CLIP1-205ENST00000514271 HOMEZQ8IX15 550 aa10.61□□□□□ -0.71
CLIP1-205ENST00000514271 NAIPQ13075 1403 aa10.61□□□□□ -0.71
CLIP1-205ENST00000514271 VIRMAQ69YN4 1812 aaKnown RBP10.61□□□□□ -0.71
CLIP1-205ENST00000514271 TAOK2Q9UL54 1235 aa10.6□□□□□ -0.71
CLIP1-205ENST00000514271 ZNF777Q9ULD5 760 aaPredicted RBP10.6□□□□□ -0.71
CLIP1-205ENST00000514271 FER1L4A9Z1Z3 1794 aa10.59□□□□□ -0.71
CLIP1-205ENST00000514271 UNC13BO14795 1591 aa10.58□□□□□ -0.72
CLIP1-205ENST00000514271 RNF123Q5XPI4 1314 aa10.58□□□□□ -0.72
CLIP1-205ENST00000514271 YEATS2Q9ULM3 1422 aa10.58□□□□□ -0.72
CLIP1-205ENST00000514271 PRDM15P57071 1507 aaPredicted RBP10.58□□□□□ -0.72
CLIP1-205ENST00000514271 RAPGEF3O95398 923 aa10.57□□□□□ -0.72
CLIP1-205ENST00000514271 HNRNPMP52272 730 aaKnown RBP eCLIP10.57□□□□□ -0.72
CLIP1-205ENST00000514271 LMTK2Q8IWU2 1503 aa10.57□□□□□ -0.72
CLIP1-205ENST00000514271 NCOA1Q15788 1441 aa10.57□□□□□ -0.72
CLIP1-205ENST00000514271 LAMC1P11047 1609 aa10.56□□□□□ -0.72
CLIP1-205ENST00000514271 AFAP1Q8N556 730 aa10.55□□□□□ -0.72
CLIP1-205ENST00000514271 KIF15Q9NS87 1388 aa10.55□□□□□ -0.72
CLIP1-205ENST00000514271 VWDEQ8N2E2 1590 aa10.54□□□□□ -0.72
CLIP1-205ENST00000514271 PODXL2Q9NZ53 605 aa10.54□□□□□ -0.72
CLIP1-205ENST00000514271 ZNF644Q9H582 1327 aaPredicted RBP10.53□□□□□ -0.72
CLIP1-205ENST00000514271 KANK1Q14678 1352 aa10.53□□□□□ -0.72
CLIP1-205ENST00000514271 NPATQ14207 1427 aa10.53□□□□□ -0.72
CLIP1-205ENST00000514271 IQGAP3Q86VI3 1631 aa10.52□□□□□ -0.72
CLIP1-205ENST00000514271 RBM19Q9Y4C8 960 aaKnown RBP10.52□□□□□ -0.73
CLIP1-205ENST00000514271 MADDQ8WXG6 1647 aa10.52□□□□□ -0.73
CLIP1-205ENST00000514271 ARHGAP31Q2M1Z3 1444 aa10.52□□□□□ -0.73
CLIP1-205ENST00000514271 RPRD2Q5VT52 1461 aaKnown RBP10.52□□□□□ -0.73
CLIP1-205ENST00000514271 MYT1LQ9UL68 1186 aa10.52□□□□□ -0.73
CLIP1-205ENST00000514271 TET3O43151 1660 aa10.52□□□□□ -0.73
CLIP1-205ENST00000514271 FAM50AQ14320 339 aaKnown RBP10.51□□□□□ -0.73
CLIP1-205ENST00000514271 SIGLEC1Q9BZZ2 1709 aa10.51□□□□□ -0.73
CLIP1-205ENST00000514271 RIMS1Q86UR5 1692 aaKnown RBP10.51□□□□□ -0.73
CLIP1-205ENST00000514271 MROH1Q8NDA8 1641 aa10.51□□□□□ -0.73
CLIP1-205ENST00000514271 KDM5AP29375 1690 aaKnown RBP10.51□□□□□ -0.73
CLIP1-205ENST00000514271 ANKRD50Q9ULJ7 1429 aa10.51□□□□□ -0.73
CLIP1-205ENST00000514271 CAMSAP1Q5T5Y3 1602 aa10.5□□□□□ -0.73
CLIP1-205ENST00000514271 ERICH6BQ5W0A0 696 aa10.49□□□□□ -0.73
CLIP1-205ENST00000514271 YTHDC1Q96MU7 727 aaKnown RBP10.49□□□□□ -0.73
CLIP1-205ENST00000514271 CLTCQ00610 1675 aaKnown RBP10.48□□□□□ -0.73
CLIP1-205ENST00000514271 PREX1Q8TCU6 1659 aa10.48□□□□□ -0.73
CLIP1-205ENST00000514271 ABCC3O15438 1527 aa10.48□□□□□ -0.73
CLIP1-205ENST00000514271 C3P01024 1663 aa10.48□□□□□ -0.73
CLIP1-205ENST00000514271 ZNF142P52746 1687 aaPredicted RBP10.48□□□□□ -0.73
CLIP1-205ENST00000514271 PZPP20742 1482 aa10.48□□□□□ -0.73
CLIP1-205ENST00000514271 ESF1Q9H501 851 aaKnown RBP10.47□□□□□ -0.73
CLIP1-205ENST00000514271 SETD1BQ9UPS6 1966 aaKnown RBP10.47□□□□□ -0.73
CLIP1-205ENST00000514271 ARID4BQ4LE39 1312 aaPredicted RBP10.46□□□□□ -0.73
CLIP1-205ENST00000514271 EFCAB6Q5THR3 1501 aa10.46□□□□□ -0.73
CLIP1-205ENST00000514271 PTPRMP28827 1452 aa10.46□□□□□ -0.73
CLIP1-205ENST00000514271 SPATA31D1Q6ZQQ2 1576 aa10.46□□□□□ -0.74
CLIP1-205ENST00000514271 CEP152O94986 1710 aa10.45□□□□□ -0.74
CLIP1-205ENST00000514271 TPRNQ4KMQ1 711 aa10.44□□□□□ -0.74
CLIP1-205ENST00000514271 NLRP1Q9C000 1473 aa10.43□□□□□ -0.74
CLIP1-205ENST00000514271 NEURL4Q96JN8 1562 aa10.43□□□□□ -0.74
CLIP1-205ENST00000514271 TRPM1Q7Z4N2 1603 aa10.43□□□□□ -0.74
CLIP1-205ENST00000514271 UHRF1BP1Q6BDS2 1440 aa10.42□□□□□ -0.74
CLIP1-205ENST00000514271 KIF3BO15066 747 aa10.42□□□□□ -0.74
CLIP1-205ENST00000514271 MYO3AQ8NEV4 1616 aa10.4□□□□□ -0.74
CLIP1-205ENST00000514271 RRP7BPQ9NSQ0 103 aa10.39□□□□□ -0.75
CLIP1-205ENST00000514271 SMG6Q86US8 1419 aaKnown RBP10.39□□□□□ -0.75
CLIP1-205ENST00000514271 SPHKAPQ2M3C7 1700 aa10.39□□□□□ -0.75
CLIP1-205ENST00000514271 WASHC2AQ641Q2 1341 aa10.39□□□□□ -0.75
CLIP1-205ENST00000514271 ZMYM3Q14202 1370 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 108.5 ms