RNA–Protein interactions for RNA: ENST00000513988.1

CLDND1-229, Transcript of claudin domain containing 1, humanhuman

TSL 2

Gene CLDND1, Length 598 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1-229ENST00000513988 KIDINS220Q9ULH0 1771 aa13.25□□□□□ -0.29
CLDND1-229ENST00000513988 IQGAP1P46940 1657 aa13.25□□□□□ -0.29
CLDND1-229ENST00000513988 CDK13Q14004 1512 aaKnown RBP13.25□□□□□ -0.29
CLDND1-229ENST00000513988 RBM33Q96EV2 1170 aaKnown RBP13.25□□□□□ -0.29
CLDND1-229ENST00000513988 DEPDC5O75140 1603 aa13.24□□□□□ -0.29
CLDND1-229ENST00000513988 SETBP1Q9Y6X0 1596 aa13.24□□□□□ -0.29
CLDND1-229ENST00000513988 CDK12Q9NYV4 1490 aaPredicted RBP13.24□□□□□ -0.29
CLDND1-229ENST00000513988 IFFO2Q5TF58 517 aa13.24□□□□□ -0.29
CLDND1-229ENST00000513988 MEX3CQ5U5Q3 659 aaKnown RBP13.24□□□□□ -0.29
CLDND1-229ENST00000513988 ABCC1P33527 1531 aa13.23□□□□□ -0.29
CLDND1-229ENST00000513988 JCADQ9P266 1359 aa13.23□□□□□ -0.29
CLDND1-229ENST00000513988 ITSN2Q9NZM3 1697 aa13.23□□□□□ -0.29
CLDND1-229ENST00000513988 ROBO1Q9Y6N7 1651 aa13.22□□□□□ -0.29
CLDND1-229ENST00000513988 THEMISQ8N1K5 641 aaPredicted RBP13.22□□□□□ -0.29
CLDND1-229ENST00000513988 PRXQ9BXM0 1461 aa13.22□□□□□ -0.29
CLDND1-229ENST00000513988 TNRQ92752 1358 aa13.21□□□□□ -0.29
CLDND1-229ENST00000513988 GGT6Q6P531 493 aa13.2□□□□□ -0.3
CLDND1-229ENST00000513988 U3KPZ7 1027 aaPredicted RBP13.19□□□□□ -0.3
CLDND1-229ENST00000513988 FAM135AQ9P2D6 1515 aa13.18□□□□□ -0.3
CLDND1-229ENST00000513988 KIF14Q15058 1648 aa13.18□□□□□ -0.3
CLDND1-229ENST00000513988 XIRP1Q702N8 1843 aaKnown RBP13.18□□□□□ -0.3
CLDND1-229ENST00000513988 NUTM2BA6NNL0 878 aaPredicted RBP13.17□□□□□ -0.3
CLDND1-229ENST00000513988 NUTM2EB1AL46 878 aaPredicted RBP13.17□□□□□ -0.3
CLDND1-229ENST00000513988 RANGAP1P46060 587 aaPredicted RBP13.17□□□□□ -0.3
CLDND1-229ENST00000513988 NUTM2DQ5VT03 806 aaPredicted RBP13.17□□□□□ -0.3
CLDND1-229ENST00000513988 NUTM2AQ8IVF1 878 aaPredicted RBP13.17□□□□□ -0.3
CLDND1-229ENST00000513988 LRP6O75581 1613 aa13.17□□□□□ -0.3
CLDND1-229ENST00000513988 PHLPP1O60346 1717 aa13.16□□□□□ -0.3
CLDND1-229ENST00000513988 SLC4A2P04920 1241 aa13.16□□□□□ -0.3
CLDND1-229ENST00000513988 UGGT1Q9NYU2 1555 aa13.15□□□□□ -0.3
CLDND1-229ENST00000513988 SPATA31A6Q5VVP1 1343 aa13.15□□□□□ -0.3
CLDND1-229ENST00000513988 KDM5DQ9BY66 1539 aa13.14□□□□□ -0.31
CLDND1-229ENST00000513988 FBXO31Q5XUX0 539 aaPredicted RBP13.14□□□□□ -0.31
CLDND1-229ENST00000513988 CDK11AQ9UQ88 783 aaPredicted RBP13.14□□□□□ -0.31
CLDND1-229ENST00000513988 CDC42BPBQ9Y5S2 1711 aa13.13□□□□□ -0.31
CLDND1-229ENST00000513988 LRRC9Q6ZRR7 1453 aa13.13□□□□□ -0.31
CLDND1-229ENST00000513988 RGS12O14924 1447 aa13.13□□□□□ -0.31
CLDND1-229ENST00000513988 PLXNC1O60486 1568 aa13.12□□□□□ -0.31
CLDND1-229ENST00000513988 SAMD9LQ8IVG5 1584 aa13.12□□□□□ -0.31
CLDND1-229ENST00000513988 SPAG9O60271 1321 aaKnown RBP13.12□□□□□ -0.31
CLDND1-229ENST00000513988 A2MP01023 1474 aa13.11□□□□□ -0.31
CLDND1-229ENST00000513988 NLRP1Q9C000 1473 aa13.11□□□□□ -0.31
CLDND1-229ENST00000513988 ZC3H13Q5T200 1668 aaKnown RBP13.11□□□□□ -0.31
CLDND1-229ENST00000513988 ATAD2Q6PL18 1390 aa13.1□□□□□ -0.31
CLDND1-229ENST00000513988 CLIP1P30622 1438 aa13.09□□□□□ -0.31
CLDND1-229ENST00000513988 ATP1B4Q9UN42 357 aaPredicted RBP13.09□□□□□ -0.31
CLDND1-229ENST00000513988 PZPP20742 1482 aa13.09□□□□□ -0.31
CLDND1-229ENST00000513988 ATP7AQ04656 1500 aa13.08□□□□□ -0.31
CLDND1-229ENST00000513988 TMEM94Q12767 1356 aa13.08□□□□□ -0.31
CLDND1-229ENST00000513988 TROQ12816 1431 aaPredicted RBP13.08□□□□□ -0.32
CLDND1-229ENST00000513988 FGD6Q6ZV73 1430 aa13.08□□□□□ -0.32
CLDND1-229ENST00000513988 PREX2Q70Z35 1606 aa13.08□□□□□ -0.32
CLDND1-229ENST00000513988 MIA2Q96PC5 1412 aa13.07□□□□□ -0.32
CLDND1-229ENST00000513988 COL16A1Q07092 1604 aaPredicted RBP13.07□□□□□ -0.32
CLDND1-229ENST00000513988 AFF2P51816 1311 aa13.07□□□□□ -0.32
CLDND1-229ENST00000513988 LRP5O75197 1615 aa13.06□□□□□ -0.32
CLDND1-229ENST00000513988 RBM6P78332 1123 aaKnown RBP13.06□□□□□ -0.32
CLDND1-229ENST00000513988 YY1P25490 414 aa13.03□□□□□ -0.32
CLDND1-229ENST00000513988 SLAIN2Q9P270 581 aa13.03□□□□□ -0.32
CLDND1-229ENST00000513988 SCAF11Q99590 1463 aaKnown RBP13.03□□□□□ -0.32
CLDND1-229ENST00000513988 QTRT2Q9H974 415 aaKnown RBP13.02□□□□□ -0.33
CLDND1-229ENST00000513988 SPINK5Q9NQ38 1064 aaPredicted RBP13.02□□□□□ -0.33
CLDND1-229ENST00000513988 MAP3K1Q13233 1512 aa13.02□□□□□ -0.33
CLDND1-229ENST00000513988 INO80Q9ULG1 1556 aaPredicted RBP13.02□□□□□ -0.33
CLDND1-229ENST00000513988 SHPRHQ149N8 1683 aa13.02□□□□□ -0.33
CLDND1-229ENST00000513988 PROSER2Q86WR7 435 aaPredicted RBP13.01□□□□□ -0.33
CLDND1-229ENST00000513988 ZNF777Q9ULD5 760 aaPredicted RBP13.01□□□□□ -0.33
CLDND1-229ENST00000513988 SYCP2Q9BX26 1530 aa13.01□□□□□ -0.33
CLDND1-229ENST00000513988 EP400Q96L91 3159 aa13□□□□□ -0.33
CLDND1-229ENST00000513988 MSH6P52701 1360 aa13□□□□□ -0.33
CLDND1-229ENST00000513988 CCDC125Q86Z20 511 aa13□□□□□ -0.33
CLDND1-229ENST00000513988 HNRNPMP52272 730 aaKnown RBP eCLIP12.99□□□□□ -0.33
CLDND1-229ENST00000513988 NGLY1Q96IV0 654 aa12.99□□□□□ -0.33
CLDND1-229ENST00000513988 ADGBQ8N7X0 1667 aa12.99□□□□□ -0.33
CLDND1-229ENST00000513988 WASHC2CQ9Y4E1 1318 aa12.97□□□□□ -0.33
CLDND1-229ENST00000513988 TXNDC2Q86VQ3 553 aa12.97□□□□□ -0.33
CLDND1-229ENST00000513988 TIAM1Q13009 1591 aa12.96□□□□□ -0.33
CLDND1-229ENST00000513988 KCNA6P17658 529 aa12.95□□□□□ -0.34
CLDND1-229ENST00000513988 LTKP29376 864 aa12.95□□□□□ -0.34
CLDND1-229ENST00000513988 CDC42BPAQ5VT25 1732 aa12.95□□□□□ -0.34
CLDND1-229ENST00000513988 PRDM15P57071 1507 aaPredicted RBP12.94□□□□□ -0.34
CLDND1-229ENST00000513988 C8orf37Q96NL8 207 aa12.94□□□□□ -0.34
CLDND1-229ENST00000513988 KIF3BO15066 747 aa12.93□□□□□ -0.34
CLDND1-229ENST00000513988 CAPN15O75808 1086 aa12.93□□□□□ -0.34
CLDND1-229ENST00000513988 EID1Q9Y6B2 187 aa12.93□□□□□ -0.34
CLDND1-229ENST00000513988 NWD1Q149M9 1564 aa12.93□□□□□ -0.34
CLDND1-229ENST00000513988 ABCC3O15438 1527 aa12.93□□□□□ -0.34
CLDND1-229ENST00000513988 AHDC1Q5TGY3 1603 aaPredicted RBP12.92□□□□□ -0.34
CLDND1-229ENST00000513988 SENP3-EIF4A1A0A087X0R7 540 aa12.92□□□□□ -0.34
CLDND1-229ENST00000513988 FMN1Q68DA7 1419 aa12.92□□□□□ -0.34
CLDND1-229ENST00000513988 UBR1Q8IWV7 1749 aa12.91□□□□□ -0.34
CLDND1-229ENST00000513988 NHSL1Q5SYE7 1610 aa12.91□□□□□ -0.34
CLDND1-229ENST00000513988 NKTRP30414 1462 aaKnown RBP12.91□□□□□ -0.34
CLDND1-229ENST00000513988 NCOA2Q15596 1464 aa12.91□□□□□ -0.34
CLDND1-229ENST00000513988 ARHGAP23Q9P227 1491 aa12.91□□□□□ -0.34
CLDND1-229ENST00000513988 SLIT1O75093 1534 aa12.9□□□□□ -0.34
CLDND1-229ENST00000513988 DHX29Q7Z478 1369 aaKnown RBP12.9□□□□□ -0.34
CLDND1-229ENST00000513988 KIAA1107Q9UPP5 1409 aa12.89□□□□□ -0.35
CLDND1-229ENST00000513988 PLEKHH2Q8IVE3 1493 aa12.89□□□□□ -0.35
CLDND1-229ENST00000513988 KDM5AP29375 1690 aaKnown RBP12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms