RNA–Protein interactions for RNA: ENST00000513448.5

PROM1-215, Transcript of prominin 1, humanhuman

TSL 1 (best)

Gene PROM1, Length 2,042 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1-215ENST00000513448 ZCCHC11Q5TAX3 1644 aaKnown RBP12.81□□□□□ -0.36
PROM1-215ENST00000513448 MAGI2Q86UL8 1455 aa12.81□□□□□ -0.36
PROM1-215ENST00000513448 FKBP8Q14318 412 aa12.81□□□□□ -0.36
PROM1-215ENST00000513448 CARD11Q9BXL7 1154 aa12.8□□□□□ -0.36
PROM1-215ENST00000513448 RTEL1-TNFRSF6BF6WH68 1400 aa12.79□□□□□ -0.36
PROM1-215ENST00000513448 KTN1Q86UP2 1357 aaKnown RBP12.79□□□□□ -0.36
PROM1-215ENST00000513448 BCORL1Q5H9F3 1711 aa12.78□□□□□ -0.36
PROM1-215ENST00000513448 ZNF326Q5BKZ1 582 aaKnown RBP12.78□□□□□ -0.36
PROM1-215ENST00000513448 ERICH6BQ5W0A0 696 aa12.78□□□□□ -0.36
PROM1-215ENST00000513448 DCAF11Q8TEB1 546 aa12.78□□□□□ -0.36
PROM1-215ENST00000513448 MRS2Q9HD23 443 aa12.78□□□□□ -0.36
PROM1-215ENST00000513448 ABCC1P33527 1531 aa12.78□□□□□ -0.36
PROM1-215ENST00000513448 DHX29Q7Z478 1369 aaKnown RBP12.78□□□□□ -0.36
PROM1-215ENST00000513448 ZBED9Q6R2W3 1325 aa12.77□□□□□ -0.37
PROM1-215ENST00000513448 PRAG1Q86YV5 1406 aa12.76□□□□□ -0.37
PROM1-215ENST00000513448 PLA2R1Q13018 1463 aa12.76□□□□□ -0.37
PROM1-215ENST00000513448 GPRASP1Q5JY77 1395 aa12.76□□□□□ -0.37
PROM1-215ENST00000513448 LAMC1P11047 1609 aa12.76□□□□□ -0.37
PROM1-215ENST00000513448 STAC3Q96MF2 364 aa12.74□□□□□ -0.37
PROM1-215ENST00000513448 TRPM1Q7Z4N2 1603 aa12.74□□□□□ -0.37
PROM1-215ENST00000513448 CCDC184Q52MB2 194 aa12.73□□□□□ -0.37
PROM1-215ENST00000513448 KDM2AQ9Y2K7 1162 aa12.73□□□□□ -0.37
PROM1-215ENST00000513448 EIF2AK4Q9P2K8 1649 aaKnown RBP12.73□□□□□ -0.37
PROM1-215ENST00000513448 ST20-MTHFSA0A0A6YYL1 179 aa12.72□□□□□ -0.37
PROM1-215ENST00000513448 WDR7Q9Y4E6 1490 aa12.72□□□□□ -0.37
PROM1-215ENST00000513448 FAM9BQ8IZU0 186 aa12.71□□□□□ -0.37
PROM1-215ENST00000513448 SPAG9O60271 1321 aaKnown RBP12.71□□□□□ -0.37
PROM1-215ENST00000513448 TRAPPC8Q9Y2L5 1435 aa12.71□□□□□ -0.37
PROM1-215ENST00000513448 A2MP01023 1474 aa12.71□□□□□ -0.38
PROM1-215ENST00000513448 RALBP1Q15311 655 aa12.71□□□□□ -0.38
PROM1-215ENST00000513448 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.71□□□□□ -0.38
PROM1-215ENST00000513448 WASHC2CQ9Y4E1 1318 aa12.69□□□□□ -0.38
PROM1-215ENST00000513448 PRDM15P57071 1507 aaPredicted RBP12.69□□□□□ -0.38
PROM1-215ENST00000513448 ZFYVE16Q7Z3T8 1539 aa12.69□□□□□ -0.38
PROM1-215ENST00000513448 ABCA9Q8IUA7 1624 aa12.68□□□□□ -0.38
PROM1-215ENST00000513448 TSHZ2Q9NRE2 1034 aa12.68□□□□□ -0.38
PROM1-215ENST00000513448 E9PCH4 1651 aa12.68□□□□□ -0.38
PROM1-215ENST00000513448 DEPDC5O75140 1603 aa12.68□□□□□ -0.38
PROM1-215ENST00000513448 BRD4O60885 1362 aaPredicted RBP12.67□□□□□ -0.38
PROM1-215ENST00000513448 PTPRTO14522 1441 aa12.66□□□□□ -0.38
PROM1-215ENST00000513448 BCANQ96GW7 911 aa12.66□□□□□ -0.38
PROM1-215ENST00000513448 NEURL4Q96JN8 1562 aa12.66□□□□□ -0.38
PROM1-215ENST00000513448 MYT1Q01538 1121 aa12.66□□□□□ -0.38
PROM1-215ENST00000513448 RGL3Q3MIN7 710 aa12.66□□□□□ -0.38
PROM1-215ENST00000513448 POLR3GLQ9BT43 218 aa12.66□□□□□ -0.38
PROM1-215ENST00000513448 TRPM2O94759 1503 aa12.65□□□□□ -0.38
PROM1-215ENST00000513448 FANCAO15360 1455 aa12.65□□□□□ -0.38
PROM1-215ENST00000513448 MYBBP1AQ9BQG0 1328 aaKnown RBP12.65□□□□□ -0.38
PROM1-215ENST00000513448 PNISRQ8TF01 805 aaKnown RBP12.65□□□□□ -0.38
PROM1-215ENST00000513448 KANK1Q14678 1352 aa12.65□□□□□ -0.39
PROM1-215ENST00000513448 INO80Q9ULG1 1556 aaPredicted RBP12.65□□□□□ -0.39
PROM1-215ENST00000513448 TMC1Q8TDI8 760 aa12.64□□□□□ -0.39
PROM1-215ENST00000513448 ATP7AQ04656 1500 aa12.64□□□□□ -0.39
PROM1-215ENST00000513448 COL17A1Q9UMD9 1497 aaPredicted RBP12.64□□□□□ -0.39
PROM1-215ENST00000513448 AFAP1Q8N556 730 aa12.64□□□□□ -0.39
PROM1-215ENST00000513448 VWDEQ8N2E2 1590 aa12.64□□□□□ -0.39
PROM1-215ENST00000513448 TET3O43151 1660 aa12.63□□□□□ -0.39
PROM1-215ENST00000513448 SMG6Q86US8 1419 aaKnown RBP12.63□□□□□ -0.39
PROM1-215ENST00000513448 RNF17Q9BXT8 1623 aaKnown RBP12.63□□□□□ -0.39
PROM1-215ENST00000513448 NBPF1Q3BBV0 1214 aa12.62□□□□□ -0.39
PROM1-215ENST00000513448 LRPPRCP42704 1394 aaKnown RBP12.62□□□□□ -0.39
PROM1-215ENST00000513448 TMF1P82094 1093 aa12.62□□□□□ -0.39
PROM1-215ENST00000513448 TESK2Q96S53 571 aa12.62□□□□□ -0.39
PROM1-215ENST00000513448 INSRP06213 1382 aa12.61□□□□□ -0.39
PROM1-215ENST00000513448 PARD3Q8TEW0 1356 aa12.61□□□□□ -0.39
PROM1-215ENST00000513448 ADGRL1O94910 1474 aa12.61□□□□□ -0.39
PROM1-215ENST00000513448 SCAPERQ9BY12 1400 aa12.61□□□□□ -0.39
PROM1-215ENST00000513448 CEP152O94986 1710 aa12.61□□□□□ -0.39
PROM1-215ENST00000513448 SPHKAPQ2M3C7 1700 aa12.61□□□□□ -0.39
PROM1-215ENST00000513448 SLC24A1O60721 1099 aa12.61□□□□□ -0.39
PROM1-215ENST00000513448 PPP4R2Q9NY27 417 aa12.61□□□□□ -0.39
PROM1-215ENST00000513448 ASXL2Q76L83 1435 aa12.6□□□□□ -0.39
PROM1-215ENST00000513448 PER1O15534 1290 aaPredicted RBP12.6□□□□□ -0.39
PROM1-215ENST00000513448 NLRP13Q86W25 1043 aa12.6□□□□□ -0.39
PROM1-215ENST00000513448 ZMYM4Q5VZL5 1548 aa12.59□□□□□ -0.39
PROM1-215ENST00000513448 NUDCQ9Y266 331 aa12.59□□□□□ -0.39
PROM1-215ENST00000513448 MADDQ8WXG6 1647 aa12.58□□□□□ -0.4
PROM1-215ENST00000513448 CDCA8Q53HL2 280 aa12.58□□□□□ -0.4
PROM1-215ENST00000513448 NPM1P06748 294 aaKnown RBP eCLIP12.57□□□□□ -0.4
PROM1-215ENST00000513448 ZNF518AQ6AHZ1 1483 aa12.57□□□□□ -0.4
PROM1-215ENST00000513448 KIAA1210Q9ULL0 1709 aa12.57□□□□□ -0.4
PROM1-215ENST00000513448 CFAP74Q9C0B2 1584 aa12.56□□□□□ -0.4
PROM1-215ENST00000513448 OSCARQ8IYS5 282 aa12.56□□□□□ -0.4
PROM1-215ENST00000513448 LMTK2Q8IWU2 1503 aa12.56□□□□□ -0.4
PROM1-215ENST00000513448 RNF123Q5XPI4 1314 aa12.56□□□□□ -0.4
PROM1-215ENST00000513448 SCAF11Q99590 1463 aaKnown RBP12.56□□□□□ -0.4
PROM1-215ENST00000513448 CLTCL1P53675 1640 aa12.55□□□□□ -0.4
PROM1-215ENST00000513448 DISP3Q9P2K9 1392 aa12.55□□□□□ -0.4
PROM1-215ENST00000513448 IQGAP1P46940 1657 aa12.55□□□□□ -0.4
PROM1-215ENST00000513448 KIF3BO15066 747 aa12.55□□□□□ -0.4
PROM1-215ENST00000513448 EIF3AQ14152 1382 aaKnown RBP12.54□□□□□ -0.4
PROM1-215ENST00000513448 PDE3BQ13370 1112 aa12.54□□□□□ -0.4
PROM1-215ENST00000513448 MROH1Q8NDA8 1641 aa12.53□□□□□ -0.4
PROM1-215ENST00000513448 MYOM2P54296 1465 aa12.53□□□□□ -0.4
PROM1-215ENST00000513448 KIDINS220Q9ULH0 1771 aa12.53□□□□□ -0.4
PROM1-215ENST00000513448 EFCAB6Q5THR3 1501 aa12.52□□□□□ -0.4
PROM1-215ENST00000513448 MLH3Q9UHC1 1453 aa12.52□□□□□ -0.4
PROM1-215ENST00000513448 PANK3Q9H999 370 aa12.52□□□□□ -0.41
PROM1-215ENST00000513448 MYT1LQ9UL68 1186 aa12.51□□□□□ -0.41
PROM1-215ENST00000513448 RBM19Q9Y4C8 960 aaKnown RBP12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms