RNA–Protein interactions for RNA: ENST00000512726.1

RFC1-214, Transcript of replication factor C subunit 1, humanhuman

TSL 2

Gene RFC1, Length 752 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-214ENST00000512726 CDHR5Q9HBB8 845 aa13.31□□□□□ -0.28
RFC1-214ENST00000512726 MDM2Q00987 491 aaPredicted RBP13.3□□□□□ -0.28
RFC1-214ENST00000512726 NPDC1Q9NQX5 325 aaPredicted RBP13.3□□□□□ -0.28
RFC1-214ENST00000512726 TRAK2O60296 914 aa13.29□□□□□ -0.28
RFC1-214ENST00000512726 SLC34A2O95436 690 aa13.29□□□□□ -0.28
RFC1-214ENST00000512726 SKIV2LQ15477 1246 aaKnown RBP13.28□□□□□ -0.28
RFC1-214ENST00000512726 CLUAP1Q96AJ1 413 aa13.28□□□□□ -0.28
RFC1-214ENST00000512726 SSTR3P32745 418 aaPredicted RBP13.27□□□□□ -0.29
RFC1-214ENST00000512726 TRIM26Q12899 539 aaPredicted RBP13.27□□□□□ -0.29
RFC1-214ENST00000512726 MCM6Q14566 821 aa13.26□□□□□ -0.29
RFC1-214ENST00000512726 RBM33Q96EV2 1170 aaKnown RBP13.26□□□□□ -0.29
RFC1-214ENST00000512726 EVX2Q03828 476 aa13.25□□□□□ -0.29
RFC1-214ENST00000512726 ATP1B4Q9UN42 357 aaPredicted RBP13.25□□□□□ -0.29
RFC1-214ENST00000512726 C3orf67Q6ZVT6 689 aa13.24□□□□□ -0.29
RFC1-214ENST00000512726 SLAIN1Q8ND83 568 aa13.24□□□□□ -0.29
RFC1-214ENST00000512726 COLQQ9Y215 455 aaPredicted RBP13.24□□□□□ -0.29
RFC1-214ENST00000512726 BEGAINQ9BUH8 593 aa13.23□□□□□ -0.29
RFC1-214ENST00000512726 TYW1BQ6NUM6 668 aa13.22□□□□□ -0.29
RFC1-214ENST00000512726 PHOX2BQ99453 314 aa13.22□□□□□ -0.29
RFC1-214ENST00000512726 PCDHGA10Q9Y5H3 936 aa13.22□□□□□ -0.29
RFC1-214ENST00000512726 OATP04181 439 aa13.21□□□□□ -0.29
RFC1-214ENST00000512726 CCDC82Q8N4S0 544 aa13.2□□□□□ -0.3
RFC1-214ENST00000512726 FBXW7Q969H0 707 aa13.2□□□□□ -0.3
RFC1-214ENST00000512726 RAD21O60216 631 aa13.19□□□□□ -0.3
RFC1-214ENST00000512726 TSR1Q2NL82 804 aaKnown RBP13.19□□□□□ -0.3
RFC1-214ENST00000512726 FAM217BQ9NTX9 383 aaPredicted RBP13.19□□□□□ -0.3
RFC1-214ENST00000512726 SLC39A7Q92504 469 aa13.18□□□□□ -0.3
RFC1-214ENST00000512726 PDIA4P13667 645 aaKnown RBP13.17□□□□□ -0.3
RFC1-214ENST00000512726 HRCP23327 699 aa13.17□□□□□ -0.3
RFC1-214ENST00000512726 METTL3Q86U44 580 aaKnown RBP13.17□□□□□ -0.3
RFC1-214ENST00000512726 PROSER2Q86WR7 435 aaPredicted RBP13.17□□□□□ -0.3
RFC1-214ENST00000512726 CERKQ8TCT0 537 aa13.17□□□□□ -0.3
RFC1-214ENST00000512726 DCBLD2Q96PD2 775 aa13.17□□□□□ -0.3
RFC1-214ENST00000512726 PROCA1Q8NCQ7 364 aaPredicted RBP13.16□□□□□ -0.3
RFC1-214ENST00000512726 POLR3EQ9NVU0 708 aa13.16□□□□□ -0.3
RFC1-214ENST00000512726 PELP1Q8IZL8 1130 aaKnown RBP13.15□□□□□ -0.3
RFC1-214ENST00000512726 C7P10643 843 aa13.14□□□□□ -0.31
RFC1-214ENST00000512726 JPH4Q96JJ6 628 aa13.14□□□□□ -0.31
RFC1-214ENST00000512726 PCDHGA4Q9Y5G9 962 aa13.13□□□□□ -0.31
RFC1-214ENST00000512726 RANGAP1P46060 587 aaPredicted RBP13.12□□□□□ -0.31
RFC1-214ENST00000512726 FAM161AQ3B820 660 aa13.12□□□□□ -0.31
RFC1-214ENST00000512726 PXYLP1Q8TE99 480 aa13.12□□□□□ -0.31
RFC1-214ENST00000512726 DIXDC1Q155Q3 683 aa13.11□□□□□ -0.31
RFC1-214ENST00000512726 MYSM1Q5VVJ2 828 aa13.11□□□□□ -0.31
RFC1-214ENST00000512726 PADI6Q6TGC4 694 aa13.11□□□□□ -0.31
RFC1-214ENST00000512726 ZNF777Q9ULD5 760 aaPredicted RBP13.11□□□□□ -0.31
RFC1-214ENST00000512726 SPDYE5A6NIY4 337 aa13.1□□□□□ -0.31
RFC1-214ENST00000512726 GABBR2O75899 941 aa13.1□□□□□ -0.31
RFC1-214ENST00000512726 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.1□□□□□ -0.31
RFC1-214ENST00000512726 ADGRG1Q9Y653 693 aa13.1□□□□□ -0.31
RFC1-214ENST00000512726 CLK2P49760 499 aaKnown RBP13.09□□□□□ -0.31
RFC1-214ENST00000512726 NLRP7Q8WX94 980 aa13.09□□□□□ -0.31
RFC1-214ENST00000512726 RBM27Q9P2N5 1060 aaKnown RBP13.09□□□□□ -0.31
RFC1-214ENST00000512726 ZBTB7CA1YPR0 619 aa13.08□□□□□ -0.32
RFC1-214ENST00000512726 POTEFA5A3E0 1075 aa13.08□□□□□ -0.32
RFC1-214ENST00000512726 FNBP4Q8N3X1 1017 aaPredicted RBP13.08□□□□□ -0.32
RFC1-214ENST00000512726 CCDC97Q96F63 343 aaPredicted RBP13.08□□□□□ -0.32
RFC1-214ENST00000512726 SERPINA10Q9UK55 444 aa13.08□□□□□ -0.32
RFC1-214ENST00000512726 FOSBP53539 338 aa13.07□□□□□ -0.32
RFC1-214ENST00000512726 C6orf132Q5T0Z8 1188 aa13.07□□□□□ -0.32
RFC1-214ENST00000512726 BANK1Q8NDB2 785 aa13.07□□□□□ -0.32
RFC1-214ENST00000512726 POM121Q96HA1 1249 aa13.07□□□□□ -0.32
RFC1-214ENST00000512726 TBC1D2Q9BYX2 928 aa13.05□□□□□ -0.32
RFC1-214ENST00000512726 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.05□□□□□ -0.32
RFC1-214ENST00000512726 METRNQ9UJH8 293 aa13.05□□□□□ -0.32
RFC1-214ENST00000512726 ZDHHC16Q969W1 377 aa13.04□□□□□ -0.32
RFC1-214ENST00000512726 TTC13Q8NBP0 860 aa13.03□□□□□ -0.32
RFC1-214ENST00000512726 RBM46Q8TBY0 533 aaKnown RBP13.03□□□□□ -0.32
RFC1-214ENST00000512726 KDM4FA0A1W2PPD8 638 aa13.02□□□□□ -0.33
RFC1-214ENST00000512726 RFC5P40937 340 aa13.02□□□□□ -0.33
RFC1-214ENST00000512726 TMEM259Q4ZIN3 620 aa13.02□□□□□ -0.33
RFC1-214ENST00000512726 COG6Q9Y2V7 657 aa13.02□□□□□ -0.33
RFC1-214ENST00000512726 ZNF454Q8N9F8 522 aa13.01□□□□□ -0.33
RFC1-214ENST00000512726 PRSS12P56730 875 aa12.99□□□□□ -0.33
RFC1-214ENST00000512726 SNRKQ9NRH2 765 aa12.98□□□□□ -0.33
RFC1-214ENST00000512726 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.97□□□□□ -0.33
RFC1-214ENST00000512726 PPP2R2DQ66LE6 453 aa12.97□□□□□ -0.33
RFC1-214ENST00000512726 ZNF330Q9Y3S2 320 aaPredicted RBP12.97□□□□□ -0.33
RFC1-214ENST00000512726 RIC3Q7Z5B4 369 aa12.96□□□□□ -0.33
RFC1-214ENST00000512726 CDCA7LQ96GN5 454 aa12.96□□□□□ -0.33
RFC1-214ENST00000512726 WWC1Q8IX03 1113 aa12.95□□□□□ -0.34
RFC1-214ENST00000512726 PLSCR2Q9NRY7 297 aa12.95□□□□□ -0.34
RFC1-214ENST00000512726 LIMD1Q9UGP4 676 aa12.95□□□□□ -0.34
RFC1-214ENST00000512726 ADAM33Q9BZ11 813 aa12.94□□□□□ -0.34
RFC1-214ENST00000512726 CCDC9Q9Y3X0 531 aaKnown RBP12.94□□□□□ -0.34
RFC1-214ENST00000512726 TUSC1Q2TAM9 212 aa12.93□□□□□ -0.34
RFC1-214ENST00000512726 SPIRE2Q8WWL2 714 aa12.93□□□□□ -0.34
RFC1-214ENST00000512726 NPM2Q86SE8 214 aaKnown RBP12.92□□□□□ -0.34
RFC1-214ENST00000512726 SULF1Q8IWU6 871 aa12.92□□□□□ -0.34
RFC1-214ENST00000512726 PRM3Q9NNZ6 103 aa12.92□□□□□ -0.34
RFC1-214ENST00000512726 RCCD1A6NED2 376 aa12.91□□□□□ -0.34
RFC1-214ENST00000512726 NUTM1Q86Y26 1132 aa12.91□□□□□ -0.34
RFC1-214ENST00000512726 TRAIPQ9BWF2 469 aa12.91□□□□□ -0.34
RFC1-214ENST00000512726 SPTLC1O15269 473 aa12.9□□□□□ -0.34
RFC1-214ENST00000512726 CD46P15529 392 aa12.9□□□□□ -0.34
RFC1-214ENST00000512726 NECTIN2Q92692 538 aa12.9□□□□□ -0.34
RFC1-214ENST00000512726 NUDT7P0C024 238 aa12.89□□□□□ -0.35
RFC1-214ENST00000512726 FBXO31Q5XUX0 539 aaPredicted RBP12.88□□□□□ -0.35
RFC1-214ENST00000512726 KCTD17Q8N5Z5 321 aa12.88□□□□□ -0.35
RFC1-214ENST00000512726 GDPD2Q9HCC8 539 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms