RNA–Protein interactions for RNA: ENST00000512711.1

PDGFC-208, Transcript of platelet derived growth factor C, humanhuman

TSL 3

Gene PDGFC, Length 522 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-208ENST00000512711 RBM33Q96EV2 1170 aaKnown RBP6.69□□□□□ -1.34
PDGFC-208ENST00000512711 BHMG1C9JSJ3 638 aaPredicted RBP6.68□□□□□ -1.34
PDGFC-208ENST00000512711 PDIA6Q15084 440 aa6.68□□□□□ -1.34
PDGFC-208ENST00000512711 PROX2Q3B8N5 592 aa6.68□□□□□ -1.34
PDGFC-208ENST00000512711 TYW1BQ6NUM6 668 aa6.68□□□□□ -1.34
PDGFC-208ENST00000512711 C6orf132Q5T0Z8 1188 aa6.67□□□□□ -1.34
PDGFC-208ENST00000512711 KCNH8Q96L42 1107 aa6.67□□□□□ -1.34
PDGFC-208ENST00000512711 ARIH1Q9Y4X5 557 aaPredicted RBP6.67□□□□□ -1.34
PDGFC-208ENST00000512711 GRXCR2A6NFK2 248 aa6.66□□□□□ -1.34
PDGFC-208ENST00000512711 PLCB2Q00722 1185 aa6.66□□□□□ -1.34
PDGFC-208ENST00000512711 FBXW7Q969H0 707 aa6.66□□□□□ -1.34
PDGFC-208ENST00000512711 SLC4A5Q9BY07 1137 aa6.66□□□□□ -1.34
PDGFC-208ENST00000512711 SPDYE16A6NNV3 312 aaPredicted RBP6.65□□□□□ -1.34
PDGFC-208ENST00000512711 TSR1Q2NL82 804 aaKnown RBP6.65□□□□□ -1.34
PDGFC-208ENST00000512711 EPAS1Q99814 870 aa6.65□□□□□ -1.34
PDGFC-208ENST00000512711 NBR1Q14596 966 aa6.64□□□□□ -1.35
PDGFC-208ENST00000512711 PPP1R3GB7ZBB8 358 aa6.63□□□□□ -1.35
PDGFC-208ENST00000512711 OSBPP22059 807 aa6.63□□□□□ -1.35
PDGFC-208ENST00000512711 THSD4Q6ZMP0 1018 aa6.63□□□□□ -1.35
PDGFC-208ENST00000512711 KCNV2Q8TDN2 545 aa6.63□□□□□ -1.35
PDGFC-208ENST00000512711 KIAA1468Q9P260 1216 aa6.62□□□□□ -1.35
PDGFC-208ENST00000512711 MAP3K7O43318 606 aa6.61□□□□□ -1.35
PDGFC-208ENST00000512711 MLLT3P42568 568 aaPredicted RBP6.61□□□□□ -1.35
PDGFC-208ENST00000512711 EN1Q05925 392 aaPredicted RBP6.61□□□□□ -1.35
PDGFC-208ENST00000512711 IFFO2Q5TF58 517 aa6.61□□□□□ -1.35
PDGFC-208ENST00000512711 GOLGA8CPA6NN73 597 aa6.6□□□□□ -1.35
PDGFC-208ENST00000512711 RGS20O76081 388 aa6.6□□□□□ -1.35
PDGFC-208ENST00000512711 MRPL50Q8N5N7 158 aaKnown RBP6.6□□□□□ -1.35
PDGFC-208ENST00000512711 WNT2BQ93097 391 aa6.6□□□□□ -1.35
PDGFC-208ENST00000512711 KDM2AQ9Y2K7 1162 aa6.6□□□□□ -1.35
PDGFC-208ENST00000512711 C3orf80F5H4A9 247 aa6.59□□□□□ -1.35
PDGFC-208ENST00000512711 ARHGEF1Q92888 912 aaKnown RBP6.59□□□□□ -1.35
PDGFC-208ENST00000512711 FAM198AQ9UFP1 575 aa6.59□□□□□ -1.35
PDGFC-208ENST00000512711 RABGEF1Q9UJ41 708 aa6.59□□□□□ -1.35
PDGFC-208ENST00000512711 CDHR5Q9HBB8 845 aa6.58□□□□□ -1.36
PDGFC-208ENST00000512711 SEPT9Q9UHD8 586 aaPredicted RBP6.58□□□□□ -1.36
PDGFC-208ENST00000512711 TSKSQ9UJT2 592 aa6.58□□□□□ -1.36
PDGFC-208ENST00000512711 A0A0G2JS52 829 aa6.57□□□□□ -1.36
PDGFC-208ENST00000512711 TRIM6-TRIM34B2RNG4 842 aa6.57□□□□□ -1.36
PDGFC-208ENST00000512711 HAP1P54257 671 aaPredicted RBP6.57□□□□□ -1.36
PDGFC-208ENST00000512711 IRX2Q9BZI1 471 aaPredicted RBP6.57□□□□□ -1.36
PDGFC-208ENST00000512711 NPDC1Q9NQX5 325 aaPredicted RBP6.57□□□□□ -1.36
PDGFC-208ENST00000512711 SMAPO00193 183 aa6.55□□□□□ -1.36
PDGFC-208ENST00000512711 SEMA3EO15041 775 aa6.55□□□□□ -1.36
PDGFC-208ENST00000512711 CDCA7LQ96GN5 454 aa6.55□□□□□ -1.36
PDGFC-208ENST00000512711 NBPF3Q9H094 633 aa6.55□□□□□ -1.36
PDGFC-208ENST00000512711 ONECUT3O60422 494 aaPredicted RBP6.54□□□□□ -1.36
PDGFC-208ENST00000512711 BCAMP50895 628 aa6.54□□□□□ -1.36
PDGFC-208ENST00000512711 PRSS12P56730 875 aa6.54□□□□□ -1.36
PDGFC-208ENST00000512711 ZFRQ96KR1 1074 aaKnown RBP6.54□□□□□ -1.36
PDGFC-208ENST00000512711 PACS2Q86VP3 889 aa6.52□□□□□ -1.37
PDGFC-208ENST00000512711 LAPTM4BQ86VI4 370 aa6.51□□□□□ -1.37
PDGFC-208ENST00000512711 SOWAHBA6NEL2 793 aa6.5□□□□□ -1.37
PDGFC-208ENST00000512711 TATDN2Q93075 761 aa6.5□□□□□ -1.37
PDGFC-208ENST00000512711 FAM98CQ17RN3 349 aaKnown RBP6.49□□□□□ -1.37
PDGFC-208ENST00000512711 ANKK1Q8NFD2 765 aa6.49□□□□□ -1.37
PDGFC-208ENST00000512711 WBP1LQ9NX94 342 aa6.49□□□□□ -1.37
PDGFC-208ENST00000512711 ITGBL1O95965 494 aaPredicted RBP6.48□□□□□ -1.37
PDGFC-208ENST00000512711 PADI6Q6TGC4 694 aa6.48□□□□□ -1.37
PDGFC-208ENST00000512711 NUDT18Q6ZVK8 323 aa6.48□□□□□ -1.37
PDGFC-208ENST00000512711 TTC13Q8NBP0 860 aa6.48□□□□□ -1.37
PDGFC-208ENST00000512711 CERKQ8TCT0 537 aa6.48□□□□□ -1.37
PDGFC-208ENST00000512711 PTGDRQ13258 359 aa6.47□□□□□ -1.37
PDGFC-208ENST00000512711 P3H3Q8IVL6 736 aa6.47□□□□□ -1.37
PDGFC-208ENST00000512711 PNMA3Q9UL41 463 aa6.47□□□□□ -1.37
PDGFC-208ENST00000512711 NUTM2FA1L443 756 aa6.46□□□□□ -1.38
PDGFC-208ENST00000512711 TESPA1A2RU30 521 aaPredicted RBP6.46□□□□□ -1.38
PDGFC-208ENST00000512711 FAM161AQ3B820 660 aa6.46□□□□□ -1.38
PDGFC-208ENST00000512711 RBM26Q5T8P6 1007 aaKnown RBP6.46□□□□□ -1.38
PDGFC-208ENST00000512711 SAMD7Q7Z3H4 446 aa6.46□□□□□ -1.38
PDGFC-208ENST00000512711 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.45□□□□□ -1.38
PDGFC-208ENST00000512711 EYA1Q99502 592 aa6.44□□□□□ -1.38
PDGFC-208ENST00000512711 HPS5Q9UPZ3 1129 aa6.44□□□□□ -1.38
PDGFC-208ENST00000512711 KCNC4Q03721 635 aa6.43□□□□□ -1.38
PDGFC-208ENST00000512711 Q6ZNB5 142 aa6.43□□□□□ -1.38
PDGFC-208ENST00000512711 VSIG10Q8N0Z9 540 aa6.43□□□□□ -1.38
PDGFC-208ENST00000512711 LRCH3Q96II8 777 aa6.43□□□□□ -1.38
PDGFC-208ENST00000512711 TSR3Q9UJK0 312 aaKnown RBP6.43□□□□□ -1.38
PDGFC-208ENST00000512711 FECHP22830 423 aa6.42□□□□□ -1.38
PDGFC-208ENST00000512711 NYAP1Q6ZVC0 841 aa6.42□□□□□ -1.38
PDGFC-208ENST00000512711 RBM27Q9P2N5 1060 aaKnown RBP6.42□□□□□ -1.38
PDGFC-208ENST00000512711 NBPF26B4DH59 902 aa6.41□□□□□ -1.38
PDGFC-208ENST00000512711 PPP4CP60510 307 aa6.41□□□□□ -1.38
PDGFC-208ENST00000512711 SWT1Q5T5J6 900 aaKnown RBP6.4□□□□□ -1.38
PDGFC-208ENST00000512711 ADGRG1Q9Y653 693 aa6.4□□□□□ -1.38
PDGFC-208ENST00000512711 GPR37O15354 613 aa6.38□□□□□ -1.39
PDGFC-208ENST00000512711 FCHSD2O94868 740 aa6.38□□□□□ -1.39
PDGFC-208ENST00000512711 RNF40O75150 1001 aa6.37□□□□□ -1.39
PDGFC-208ENST00000512711 APLP1P51693 650 aa6.37□□□□□ -1.39
PDGFC-208ENST00000512711 HDGFP51858 240 aaKnown RBP6.37□□□□□ -1.39
PDGFC-208ENST00000512711 LCE2BO14633 110 aa6.36□□□□□ -1.39
PDGFC-208ENST00000512711 TJAP1Q5JTD0 557 aa6.36□□□□□ -1.39
PDGFC-208ENST00000512711 RCCD1A6NED2 376 aa6.35□□□□□ -1.39
PDGFC-208ENST00000512711 GFRA3O60609 400 aa6.35□□□□□ -1.39
PDGFC-208ENST00000512711 SMYD5Q6GMV2 418 aa6.35□□□□□ -1.39
PDGFC-208ENST00000512711 ZNF516Q92618 1163 aa6.35□□□□□ -1.39
PDGFC-208ENST00000512711 HIC1Q14526 733 aa6.34□□□□□ -1.39
PDGFC-208ENST00000512711 TRAF7Q6Q0C0 670 aa6.34□□□□□ -1.39
PDGFC-208ENST00000512711 RBM46Q8TBY0 533 aaKnown RBP6.34□□□□□ -1.39
PDGFC-208ENST00000512711 NLRP7Q8WX94 980 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms