RNA–Protein interactions for RNA: ENST00000511044.1

PCDH1-206, Transcript of protocadherin 1, humanhuman

TSL 1 (best)

Gene PCDH1, Length 2,674 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-206ENST00000511044 TSPY4P0CV99 314 aa15.83■□□□□ 0.12
PCDH1-206ENST00000511044 TSPY10P0CW01 314 aa15.83■□□□□ 0.12
PCDH1-206ENST00000511044 FAM69CQ0P6D2 419 aa15.83■□□□□ 0.12
PCDH1-206ENST00000511044 TONSLQ96HA7 1378 aa15.83■□□□□ 0.12
PCDH1-206ENST00000511044 CROCC2H7BZ55 1655 aa15.83■□□□□ 0.12
PCDH1-206ENST00000511044 C9orf84Q5VXU9 1444 aa15.82■□□□□ 0.12
PCDH1-206ENST00000511044 MBD5Q9P267 1494 aa15.82■□□□□ 0.12
PCDH1-206ENST00000511044 ABCA9Q8IUA7 1624 aa15.82■□□□□ 0.12
PCDH1-206ENST00000511044 TRAPPC8Q9Y2L5 1435 aa15.81■□□□□ 0.12
PCDH1-206ENST00000511044 CD109Q6YHK3 1445 aa15.81■□□□□ 0.12
PCDH1-206ENST00000511044 AKNAQ7Z591 1439 aa15.8■□□□□ 0.12
PCDH1-206ENST00000511044 GCC2Q8IWJ2 1684 aa15.79■□□□□ 0.12
PCDH1-206ENST00000511044 CCDC141Q6ZP82 1450 aa15.79■□□□□ 0.12
PCDH1-206ENST00000511044 NCOA1Q15788 1441 aa15.78■□□□□ 0.12
PCDH1-206ENST00000511044 FBXO3Q9UK99 471 aa15.78■□□□□ 0.12
PCDH1-206ENST00000511044 ADGRL1O94910 1474 aa15.77■□□□□ 0.12
PCDH1-206ENST00000511044 ADGBQ8N7X0 1667 aa15.77■□□□□ 0.12
PCDH1-206ENST00000511044 ABCC1P33527 1531 aa15.77■□□□□ 0.11
PCDH1-206ENST00000511044 RSPH6AQ9H0K4 717 aa15.76■□□□□ 0.11
PCDH1-206ENST00000511044 KIF15Q9NS87 1388 aa15.76■□□□□ 0.11
PCDH1-206ENST00000511044 SCAPERQ9BY12 1400 aa15.76■□□□□ 0.11
PCDH1-206ENST00000511044 RAPGEF3O95398 923 aa15.76■□□□□ 0.11
PCDH1-206ENST00000511044 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.75■□□□□ 0.11
PCDH1-206ENST00000511044 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.75■□□□□ 0.11
PCDH1-206ENST00000511044 ANKRD30AQ9BXX3 1397 aa15.75■□□□□ 0.11
PCDH1-206ENST00000511044 RBM10P98175 930 aaKnown RBP15.75■□□□□ 0.11
PCDH1-206ENST00000511044 ARHGEF5Q12774 1597 aa15.72■□□□□ 0.11
PCDH1-206ENST00000511044 ZMYND15Q9H091 742 aa15.72■□□□□ 0.11
PCDH1-206ENST00000511044 ANKRD50Q9ULJ7 1429 aa15.72■□□□□ 0.11
PCDH1-206ENST00000511044 SPAG9O60271 1321 aaKnown RBP15.72■□□□□ 0.11
PCDH1-206ENST00000511044 DIP2BQ9P265 1576 aa15.72■□□□□ 0.11
PCDH1-206ENST00000511044 RSPH4AQ5TD94 716 aa15.71■□□□□ 0.11
PCDH1-206ENST00000511044 ROCK1Q13464 1354 aa15.71■□□□□ 0.11
PCDH1-206ENST00000511044 GLIPR1L2Q4G1C9 344 aa15.7■□□□□ 0.1
PCDH1-206ENST00000511044 SLC4A1APQ9BWU0 796 aaKnown RBP15.69■□□□□ 0.1
PCDH1-206ENST00000511044 TRHP20396 242 aaPredicted RBP15.69■□□□□ 0.1
PCDH1-206ENST00000511044 NBR1Q14596 966 aa15.69■□□□□ 0.1
PCDH1-206ENST00000511044 HNRNPUQ00839 825 aaKnown RBP eCLIP15.68■□□□□ 0.1
PCDH1-206ENST00000511044 ADGRL2O95490 1459 aa15.68■□□□□ 0.1
PCDH1-206ENST00000511044 SHANK2Q9UPX8 1470 aa15.68■□□□□ 0.1
PCDH1-206ENST00000511044 KIAA1107Q9UPP5 1409 aa15.68■□□□□ 0.1
PCDH1-206ENST00000511044 CNKSR2Q8WXI2 1034 aa15.68■□□□□ 0.1
PCDH1-206ENST00000511044 MPHOSPH9Q99550 1183 aa15.68■□□□□ 0.1
PCDH1-206ENST00000511044 PLEKHH2Q8IVE3 1493 aa15.67■□□□□ 0.1
PCDH1-206ENST00000511044 IRX6P78412 446 aaPredicted RBP15.67■□□□□ 0.1
PCDH1-206ENST00000511044 KIF13AQ9H1H9 1805 aa15.67■□□□□ 0.1
PCDH1-206ENST00000511044 PAXIP1Q6ZW49 1069 aaPredicted RBP15.67■□□□□ 0.1
PCDH1-206ENST00000511044 DENND4BO75064 1496 aaPredicted RBP15.66■□□□□ 0.1
PCDH1-206ENST00000511044 MAP3K4Q9Y6R4 1608 aa15.66■□□□□ 0.1
PCDH1-206ENST00000511044 NUP155O75694 1391 aa15.65■□□□□ 0.1
PCDH1-206ENST00000511044 ZFYVE16Q7Z3T8 1539 aa15.65■□□□□ 0.1
PCDH1-206ENST00000511044 ARAP3Q8WWN8 1544 aa15.64■□□□□ 0.09
PCDH1-206ENST00000511044 ATP7AQ04656 1500 aa15.63■□□□□ 0.09
PCDH1-206ENST00000511044 HSPA5P11021 654 aaKnown RBP15.61■□□□□ 0.09
PCDH1-206ENST00000511044 GLI2P10070 1586 aa15.61■□□□□ 0.09
PCDH1-206ENST00000511044 PKD2Q13563 968 aa15.61■□□□□ 0.09
PCDH1-206ENST00000511044 NOP58Q9Y2X3 529 aaKnown RBP15.61■□□□□ 0.09
PCDH1-206ENST00000511044 PPRC1Q5VV67 1664 aaKnown RBP15.61■□□□□ 0.09
PCDH1-206ENST00000511044 ZNF326Q5BKZ1 582 aaKnown RBP15.61■□□□□ 0.09
PCDH1-206ENST00000511044 POGZQ7Z3K3 1410 aa15.6■□□□□ 0.09
PCDH1-206ENST00000511044 PZPP20742 1482 aa15.6■□□□□ 0.09
PCDH1-206ENST00000511044 KIF3BO15066 747 aa15.6■□□□□ 0.09
PCDH1-206ENST00000511044 KIDINS220Q9ULH0 1771 aa15.6■□□□□ 0.09
PCDH1-206ENST00000511044 WASHC2AQ641Q2 1341 aa15.59■□□□□ 0.09
PCDH1-206ENST00000511044 ZNF518AQ6AHZ1 1483 aa15.59■□□□□ 0.09
PCDH1-206ENST00000511044 MAST1Q9Y2H9 1570 aa15.58■□□□□ 0.09
PCDH1-206ENST00000511044 INO80Q9ULG1 1556 aaPredicted RBP15.58■□□□□ 0.08
PCDH1-206ENST00000511044 PLXNC1O60486 1568 aa15.57■□□□□ 0.08
PCDH1-206ENST00000511044 CFAP74Q9C0B2 1584 aa15.57■□□□□ 0.08
PCDH1-206ENST00000511044 PAK3O75914 559 aaPredicted RBP15.57■□□□□ 0.08
PCDH1-206ENST00000511044 EIF4G2P78344 907 aaKnown RBP eCLIP15.57■□□□□ 0.08
PCDH1-206ENST00000511044 YEATS2Q9ULM3 1422 aa15.56■□□□□ 0.08
PCDH1-206ENST00000511044 GGT6Q6P531 493 aa15.56■□□□□ 0.08
PCDH1-206ENST00000511044 CFAP65Q6ZU64 1925 aaKnown RBP15.56■□□□□ 0.08
PCDH1-206ENST00000511044 IL27Q8NEV9 243 aa15.56■□□□□ 0.08
PCDH1-206ENST00000511044 DUOX2Q9NRD8 1548 aa15.55■□□□□ 0.08
PCDH1-206ENST00000511044 NAP1L5Q96NT1 182 aaPredicted RBP15.54■□□□□ 0.08
PCDH1-206ENST00000511044 NEO1Q92859 1461 aa15.54■□□□□ 0.08
PCDH1-206ENST00000511044 RICTORQ6R327 1708 aa15.54■□□□□ 0.08
PCDH1-206ENST00000511044 CDK11BP21127 795 aaKnown RBP15.54■□□□□ 0.08
PCDH1-206ENST00000511044 COL17A1Q9UMD9 1497 aaPredicted RBP15.54■□□□□ 0.08
PCDH1-206ENST00000511044 ABCA6Q8N139 1617 aa15.53■□□□□ 0.08
PCDH1-206ENST00000511044 HECW2Q9P2P5 1572 aa15.53■□□□□ 0.08
PCDH1-206ENST00000511044 FAM135AQ9P2D6 1515 aa15.52■□□□□ 0.08
PCDH1-206ENST00000511044 FRMPD1Q5SYB0 1578 aa15.52■□□□□ 0.07
PCDH1-206ENST00000511044 CCDC184Q52MB2 194 aa15.51■□□□□ 0.07
PCDH1-206ENST00000511044 PPP4R2Q9NY27 417 aa15.51■□□□□ 0.07
PCDH1-206ENST00000511044 KDM5CP41229 1560 aa15.51■□□□□ 0.07
PCDH1-206ENST00000511044 MLECQ14165 292 aa15.51■□□□□ 0.07
PCDH1-206ENST00000511044 RTL5Q5HYW3 569 aaPredicted RBP15.51■□□□□ 0.07
PCDH1-206ENST00000511044 FAM9BQ8IZU0 186 aa15.5■□□□□ 0.07
PCDH1-206ENST00000511044 L3MBTL2Q969R5 705 aa15.5■□□□□ 0.07
PCDH1-206ENST00000511044 RTEL1-TNFRSF6BF6WH68 1400 aa15.49■□□□□ 0.07
PCDH1-206ENST00000511044 ERBINQ96RT1 1412 aa15.49■□□□□ 0.07
PCDH1-206ENST00000511044 VSIG10Q8N0Z9 540 aa15.48■□□□□ 0.07
PCDH1-206ENST00000511044 A2MP01023 1474 aa15.48■□□□□ 0.07
PCDH1-206ENST00000511044 ANKRD30BQ9BXX2 1392 aa15.48■□□□□ 0.07
PCDH1-206ENST00000511044 CNTLNQ9NXG0 1405 aa15.48■□□□□ 0.07
PCDH1-206ENST00000511044 TEX14Q8IWB6 1497 aa15.48■□□□□ 0.07
PCDH1-206ENST00000511044 C11orf95C9JLR9 678 aaPredicted RBP15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms