RNA–Protein interactions for RNA: ENST00000510852.1

USP53-207, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 2,437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-207ENST00000510852 CFDP1Q9UEE9 299 aaPredicted RBP13.61□□□□□ -0.23
USP53-207ENST00000510852 MIA2Q96PC5 1412 aa13.6□□□□□ -0.23
USP53-207ENST00000510852 FAM50AQ14320 339 aaKnown RBP13.6□□□□□ -0.23
USP53-207ENST00000510852 ABCA9Q8IUA7 1624 aa13.58□□□□□ -0.24
USP53-207ENST00000510852 NEUROD2Q15784 382 aa13.58□□□□□ -0.24
USP53-207ENST00000510852 CDC42BPAQ5VT25 1732 aa13.57□□□□□ -0.24
USP53-207ENST00000510852 PLCH2O75038 1416 aa13.57□□□□□ -0.24
USP53-207ENST00000510852 ITSN2Q9NZM3 1697 aa13.57□□□□□ -0.24
USP53-207ENST00000510852 ZNF777Q9ULD5 760 aaPredicted RBP13.57□□□□□ -0.24
USP53-207ENST00000510852 ZNF644Q9H582 1327 aaPredicted RBP13.56□□□□□ -0.24
USP53-207ENST00000510852 PTPN23Q9H3S7 1636 aa13.56□□□□□ -0.24
USP53-207ENST00000510852 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.56□□□□□ -0.24
USP53-207ENST00000510852 TCOF1Q13428 1488 aaKnown RBP13.56□□□□□ -0.24
USP53-207ENST00000510852 FAM69CQ0P6D2 419 aa13.55□□□□□ -0.24
USP53-207ENST00000510852 PREX2Q70Z35 1606 aa13.55□□□□□ -0.24
USP53-207ENST00000510852 CD109Q6YHK3 1445 aa13.54□□□□□ -0.24
USP53-207ENST00000510852 ARHGAP5Q13017 1502 aa13.54□□□□□ -0.24
USP53-207ENST00000510852 MYO5CQ9NQX4 1742 aa13.54□□□□□ -0.24
USP53-207ENST00000510852 IFNLR1Q8IU57 520 aaPredicted RBP13.54□□□□□ -0.24
USP53-207ENST00000510852 CDC42BPBQ9Y5S2 1711 aa13.54□□□□□ -0.24
USP53-207ENST00000510852 GLI2P10070 1586 aa13.53□□□□□ -0.24
USP53-207ENST00000510852 DIP2BQ9P265 1576 aa13.53□□□□□ -0.24
USP53-207ENST00000510852 APBB1O00213 710 aa13.53□□□□□ -0.24
USP53-207ENST00000510852 ITGAEP38570 1179 aa13.53□□□□□ -0.24
USP53-207ENST00000510852 EFCAB2Q5VUJ9 269 aa13.53□□□□□ -0.24
USP53-207ENST00000510852 CAMSAP2Q08AD1 1489 aa13.53□□□□□ -0.24
USP53-207ENST00000510852 CC2D2BQ6DHV5 1058 aa13.52□□□□□ -0.24
USP53-207ENST00000510852 ARAP3Q8WWN8 1544 aa13.52□□□□□ -0.24
USP53-207ENST00000510852 PPM1GO15355 546 aaPredicted RBP13.51□□□□□ -0.25
USP53-207ENST00000510852 ARID4BQ4LE39 1312 aaPredicted RBP13.51□□□□□ -0.25
USP53-207ENST00000510852 PRDM16Q9HAZ2 1276 aa13.51□□□□□ -0.25
USP53-207ENST00000510852 SAMD9LQ8IVG5 1584 aa13.5□□□□□ -0.25
USP53-207ENST00000510852 FANCAO15360 1455 aa13.49□□□□□ -0.25
USP53-207ENST00000510852 PIAS4Q8N2W9 510 aaPredicted RBP13.49□□□□□ -0.25
USP53-207ENST00000510852 MAP3K4Q9Y6R4 1608 aa13.49□□□□□ -0.25
USP53-207ENST00000510852 HNRNPMP52272 730 aaKnown RBP eCLIP13.48□□□□□ -0.25
USP53-207ENST00000510852 PTPRKQ15262 1439 aa13.47□□□□□ -0.25
USP53-207ENST00000510852 KIAA1107Q9UPP5 1409 aa13.47□□□□□ -0.25
USP53-207ENST00000510852 PLEKHH2Q8IVE3 1493 aa13.47□□□□□ -0.25
USP53-207ENST00000510852 ABCC5O15440 1437 aa13.46□□□□□ -0.25
USP53-207ENST00000510852 MBD5Q9P267 1494 aa13.46□□□□□ -0.25
USP53-207ENST00000510852 DAPK1P53355 1430 aa13.46□□□□□ -0.25
USP53-207ENST00000510852 PRDM10Q9NQV6 1147 aa13.45□□□□□ -0.26
USP53-207ENST00000510852 AKNAQ7Z591 1439 aa13.45□□□□□ -0.26
USP53-207ENST00000510852 SYCP2Q9BX26 1530 aa13.45□□□□□ -0.26
USP53-207ENST00000510852 ZNF526Q8TF50 670 aaPredicted RBP13.45□□□□□ -0.26
USP53-207ENST00000510852 KIF13AQ9H1H9 1805 aa13.45□□□□□ -0.26
USP53-207ENST00000510852 ARHGEF12Q9NZN5 1544 aa13.45□□□□□ -0.26
USP53-207ENST00000510852 DNMT1P26358 1616 aaKnown RBP13.44□□□□□ -0.26
USP53-207ENST00000510852 NCLP19338 710 aaKnown RBP13.44□□□□□ -0.26
USP53-207ENST00000510852 MFAP1P55081 439 aaKnown RBP13.44□□□□□ -0.26
USP53-207ENST00000510852 ABCC1P33527 1531 aa13.44□□□□□ -0.26
USP53-207ENST00000510852 AEBP1Q8IUX7 1158 aa13.44□□□□□ -0.26
USP53-207ENST00000510852 CHIC2Q9UKJ5 165 aa13.44□□□□□ -0.26
USP53-207ENST00000510852 ADGRL1O94910 1474 aa13.43□□□□□ -0.26
USP53-207ENST00000510852 NEO1Q92859 1461 aa13.43□□□□□ -0.26
USP53-207ENST00000510852 ARHGEF5Q12774 1597 aa13.43□□□□□ -0.26
USP53-207ENST00000510852 SENP3Q9H4L4 574 aaPredicted RBP13.43□□□□□ -0.26
USP53-207ENST00000510852 CFAP74Q9C0B2 1584 aa13.42□□□□□ -0.26
USP53-207ENST00000510852 SCAPERQ9BY12 1400 aa13.42□□□□□ -0.26
USP53-207ENST00000510852 CCDC141Q6ZP82 1450 aa13.42□□□□□ -0.26
USP53-207ENST00000510852 TMCO4Q5TGY1 634 aa13.42□□□□□ -0.26
USP53-207ENST00000510852 TSPY4P0CV99 314 aa13.41□□□□□ -0.26
USP53-207ENST00000510852 TSPY10P0CW01 314 aa13.41□□□□□ -0.26
USP53-207ENST00000510852 SCAF1Q9H7N4 1312 aaKnown RBP13.41□□□□□ -0.26
USP53-207ENST00000510852 TRAPPC8Q9Y2L5 1435 aa13.41□□□□□ -0.26
USP53-207ENST00000510852 TEX14Q8IWB6 1497 aa13.4□□□□□ -0.26
USP53-207ENST00000510852 E9PSI1 815 aa13.4□□□□□ -0.26
USP53-207ENST00000510852 TSPOAP1O95153 1857 aa13.4□□□□□ -0.26
USP53-207ENST00000510852 PPRC1Q5VV67 1664 aaKnown RBP13.4□□□□□ -0.26
USP53-207ENST00000510852 RBM10P98175 930 aaKnown RBP13.4□□□□□ -0.26
USP53-207ENST00000510852 AFAP1Q8N556 730 aa13.4□□□□□ -0.26
USP53-207ENST00000510852 VASPP50552 380 aaPredicted RBP13.39□□□□□ -0.27
USP53-207ENST00000510852 SHANK2Q9UPX8 1470 aa13.39□□□□□ -0.27
USP53-207ENST00000510852 C9orf84Q5VXU9 1444 aa13.39□□□□□ -0.27
USP53-207ENST00000510852 CCDC27Q2M243 656 aa13.38□□□□□ -0.27
USP53-207ENST00000510852 TEX2Q8IWB9 1127 aa13.38□□□□□ -0.27
USP53-207ENST00000510852 RRP7BPQ9NSQ0 103 aa13.38□□□□□ -0.27
USP53-207ENST00000510852 ROCK1Q13464 1354 aa13.38□□□□□ -0.27
USP53-207ENST00000510852 CROCC2H7BZ55 1655 aa13.38□□□□□ -0.27
USP53-207ENST00000510852 HFM1A2PYH4 1435 aa13.36□□□□□ -0.27
USP53-207ENST00000510852 NCOA1Q15788 1441 aa13.36□□□□□ -0.27
USP53-207ENST00000510852 POGZQ7Z3K3 1410 aa13.36□□□□□ -0.27
USP53-207ENST00000510852 DENND4BO75064 1496 aaPredicted RBP13.36□□□□□ -0.27
USP53-207ENST00000510852 ADGRL2O95490 1459 aa13.36□□□□□ -0.27
USP53-207ENST00000510852 SPAG9O60271 1321 aaKnown RBP13.36□□□□□ -0.27
USP53-207ENST00000510852 SETD5Q9C0A6 1442 aa13.36□□□□□ -0.27
USP53-207ENST00000510852 CNPY4Q8N129 248 aa13.35□□□□□ -0.27
USP53-207ENST00000510852 ANKRD30AQ9BXX3 1397 aa13.35□□□□□ -0.27
USP53-207ENST00000510852 ZNF518AQ6AHZ1 1483 aa13.35□□□□□ -0.27
USP53-207ENST00000510852 CLSPNQ9HAW4 1339 aa13.35□□□□□ -0.27
USP53-207ENST00000510852 NAIPQ13075 1403 aa13.35□□□□□ -0.27
USP53-207ENST00000510852 RAPGEF3O95398 923 aa13.35□□□□□ -0.27
USP53-207ENST00000510852 MAST1Q9Y2H9 1570 aa13.34□□□□□ -0.27
USP53-207ENST00000510852 LMOD2Q6P5Q4 547 aa13.34□□□□□ -0.27
USP53-207ENST00000510852 ANP32EQ9BTT0 268 aa13.34□□□□□ -0.27
USP53-207ENST00000510852 RAB3GAP2Q9H2M9 1393 aa13.33□□□□□ -0.28
USP53-207ENST00000510852 KDM4AO75164 1064 aa13.33□□□□□ -0.28
USP53-207ENST00000510852 ADGBQ8N7X0 1667 aa13.32□□□□□ -0.28
USP53-207ENST00000510852 RTEL1-TNFRSF6BF6WH68 1400 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms